Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:23553507-25832578

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31077 16 23515293 to 23588307 73014 + lncRNA gene predicted gene, 31077
Gm45338 16 23520210 to 23560081 39871 + unclassified non-coding RNA gene predicted gene 45338
Rtp4 16 23601293 to 23614222 12929 + protein coding gene receptor transporter protein 4
Tssr140566 16 23609787 to 23609826 39 - TSS region transcription start site region 140566
Tssr137722 16 23609895 to 23609961 66 + TSS region transcription start site region 137722
Tssr137723 16 23609962 to 23609999 37 + TSS region transcription start site region 137723
Tssr137724 16 23610000 to 23610032 32 + TSS region transcription start site region 137724
Tssr137725 16 23610069 to 23610082 13 + TSS region transcription start site region 137725
Tssr137726 16 23611380 to 23611407 27 + TSS region transcription start site region 137726
Tssr137727 16 23612870 to 23612895 25 + TSS region transcription start site region 137727
Tssr137728 16 23612949 to 23612978 29 + TSS region transcription start site region 137728
Tssr137729 16 23613141 to 23613178 37 + TSS region transcription start site region 137729
Tssr137730 16 23613287 to 23613319 32 + TSS region transcription start site region 137730
Tssr137731 16 23613351 to 23613365 14 + TSS region transcription start site region 137731
Tssr137732 16 23613369 to 23613413 44 + TSS region transcription start site region 137732
Gm6640 16 23717169 to 23718754 1585 - pseudogene predicted gene 6640
D16Mit146.2 16 23725843 to 23725955 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 146.2
D16Mit146 16 23725933 to 23726053 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 146
D16Mit101 16 23736976 to 23737125 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 101
Gm49515 16 23779176 to 23780127 951 - pseudogene predicted gene, 49515
Gm31430 16 23804194 to 23846878 42684 - lncRNA gene predicted gene, 31430
Gm49516 16 23852991 to 23853966 975 + pseudogene predicted gene, 49516
Sst 16 23889581 to 23890844 1263 - protein coding gene somatostatin
Cpgi8121 16 23890519 to 23890985 466 CpG island CpG island 8121
Tssr140567 16 23890805 to 23890861 56 - TSS region transcription start site region 140567
Rtp2 16 23925548 to 23930794 5246 - protein coding gene receptor transporter protein 2
Cpgi8122 16 23927295 to 23927739 444 CpG island CpG island 8122
D16Mit102 16 23963526 to 23963654 128 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 102
Bcl6 16 23965052 to 23988612 23560 - protein coding gene B cell leukemia/lymphoma 6
Tssr140568 16 23973226 to 23973232 6 - TSS region transcription start site region 140568
Tssr140569 16 23974938 to 23974953 15 - TSS region transcription start site region 140569
Tssr140570 16 23976244 to 23976294 50 - TSS region transcription start site region 140570
Tssr140571 16 23977679 to 23977689 10 - TSS region transcription start site region 140571
Tssr140572 16 23977843 to 23977863 20 - TSS region transcription start site region 140572
Cpgi8123 16 23981080 to 23981508 428 CpG island CpG island 8123
Tssr4825 16 23981188 to 23981192 4 - TSS region transcription start site region 4825
Tssr140573 16 23981197 to 23981204 7 - TSS region transcription start site region 140573
Tssr140574 16 23981223 to 23981256 33 - TSS region transcription start site region 140574
Tssr140575 16 23981284 to 23981292 8 - TSS region transcription start site region 140575
Cpgi8124 16 23984176 to 23985156 980 CpG island CpG island 8124
2900064B18Rik 16 23985595 to 23986728 1133 unclassified gene RIKEN cDNA 2900064B18 gene
Tssr137733 16 23986466 to 23986485 19 + TSS region transcription start site region 137733
Cpgi8125 16 23986991 to 23987422 431 CpG island CpG island 8125
Cpgi8126 16 23987462 to 23989158 1696 CpG island CpG island 8126
Tssr140576 16 23988233 to 23988235 2 - TSS region transcription start site region 140576
Gm37419 16 23988482 to 23988595 113 + protein coding gene predicted gene, 37419
Tssr140577 16 23988537 to 23988544 7 - TSS region transcription start site region 140577
Tssr140578 16 23988563 to 23988574 11 - TSS region transcription start site region 140578
Tssr140579 16 23988600 to 23988607 7 - TSS region transcription start site region 140579
Tssr140580 16 23988625 to 23988641 16 - TSS region transcription start site region 140580
Tssr137734 16 23988957 to 23988986 29 + TSS region transcription start site region 137734
Tssr137735 16 23988994 to 23989005 11 + TSS region transcription start site region 137735
Gm31527 16 23989011 to 23999436 10425 + lncRNA gene predicted gene, 31527
Tssr137736 16 24012744 to 24012750 6 + TSS region transcription start site region 137736
Tssr140581 16 24013220 to 24013226 6 - TSS region transcription start site region 140581
Tssr140582 16 24013374 to 24013381 7 - TSS region transcription start site region 140582
Tssr140583 16 24013399 to 24013409 10 - TSS region transcription start site region 140583
Tssr4826 16 24025732 to 24025747 15 + TSS region transcription start site region 4826
Gm49518 16 24039906 to 24060637 20731 + lincRNA gene predicted gene, 49518
Gm46545 16 24076938 to 24082795 5857 - lincRNA gene predicted gene, 46545
Gm31583 16 24085083 to 24090089 5006 - lincRNA gene predicted gene, 31583
Tssr140584 16 24090032 to 24090046 14 - TSS region transcription start site region 140584
Tssr140585 16 24090059 to 24090100 41 - TSS region transcription start site region 140585
Tssr140586 16 24090106 to 24090118 12 - TSS region transcription start site region 140586
Tssr4827 16 24090171 to 24090180 9 - TSS region transcription start site region 4827
Tssr137737 16 24096355 to 24096363 8 + TSS region transcription start site region 137737
Gm32126 16 24158149 to 24159559 1410 - sense intronic lncRNA gene predicted gene, 32126
Tssr137738 16 24179425 to 24179427 2 + TSS region transcription start site region 137738
Gm31814 16 24186057 to 24263166 77109 - sense intronic lncRNA gene predicted gene, 31814
Tssr140587 16 24193030 to 24193035 5 - TSS region transcription start site region 140587
Tssr140588 16 24193387 to 24193404 17 - TSS region transcription start site region 140588
Tssr4828 16 24193421 to 24193435 14 - TSS region transcription start site region 4828
Tssr140589 16 24193627 to 24193650 23 - TSS region transcription start site region 140589
Tssr4829 16 24193857 to 24193874 17 + TSS region transcription start site region 4829
Tssr140590 16 24199893 to 24199926 33 - TSS region transcription start site region 140590
Tssr140591 16 24216493 to 24216531 38 - TSS region transcription start site region 140591
Gm38456 16 24271143 to 24296233 25090 - lncRNA gene predicted gene, 38456
Tssr140592 16 24296173 to 24296186 13 - TSS region transcription start site region 140592
Tssr140593 16 24296200 to 24296211 11 - TSS region transcription start site region 140593
Tssr140594 16 24296221 to 24296231 10 - TSS region transcription start site region 140594
Tssr137739 16 24327532 to 24327538 6 + TSS region transcription start site region 137739
Gm41434 16 24369790 to 24370232 442 - pseudogene predicted gene, 41434
Gm4521 16 24379609 to 24380545 936 - pseudogene predicted gene 4521
Tssr140595 16 24380305 to 24380326 21 - TSS region transcription start site region 140595
Tssr140596 16 24382343 to 24382352 9 - TSS region transcription start site region 140596
Tssr140597 16 24382387 to 24382391 4 - TSS region transcription start site region 140597
Lppos 16 24392556 to 24393655 1099 - lincRNA gene LIM domain containing preferred translocation partner in lipoma, opposite strand
Cpgi8127 16 24392886 to 24394355 1469 CpG island CpG island 8127
Tssr137740 16 24393379 to 24393428 49 + TSS region transcription start site region 137740
Tssr140598 16 24393417 to 24393459 42 - TSS region transcription start site region 140598
Tssr137741 16 24393464 to 24393528 64 + TSS region transcription start site region 137741
Lpp 16 24393507 to 24992578 599071 + protein coding gene LIM domain containing preferred translocation partner in lipoma
Tssr137742 16 24393534 to 24393545 11 + TSS region transcription start site region 137742
Tssr137743 16 24393547 to 24393554 7 + TSS region transcription start site region 137743
Tssr140599 16 24393618 to 24393697 79 - TSS region transcription start site region 140599
Tssr140600 16 24393698 to 24393716 18 - TSS region transcription start site region 140600
Tssr137744 16 24393708 to 24393763 55 + TSS region transcription start site region 137744
Gm24440 16 24406355 to 24406417 62 - snRNA gene predicted gene, 24440
Tssr137745 16 24418295 to 24418296 1 + TSS region transcription start site region 137745
Tssr137746 16 24433646 to 24433669 23 + TSS region transcription start site region 137746
Tssr137747 16 24448082 to 24448153 71 + TSS region transcription start site region 137747
Tssr4830 16 24452911 to 24452921 10 - TSS region transcription start site region 4830
Tssr137748 16 24457795 to 24457810 15 + TSS region transcription start site region 137748
Tssr137749 16 24486741 to 24486763 22 + TSS region transcription start site region 137749
Tssr137750 16 24486929 to 24486945 16 + TSS region transcription start site region 137750
Tssr137751 16 24486948 to 24486986 38 + TSS region transcription start site region 137751
Tssr137752 16 24487072 to 24487109 37 + TSS region transcription start site region 137752
Tssr137753 16 24488474 to 24488479 5 + TSS region transcription start site region 137753
Tssr137754 16 24525143 to 24525148 5 + TSS region transcription start site region 137754
Morf4l1-ps1 16 24529394 to 24530362 968 + pseudogene mortality factor 4 like 1, pseudogene 1
Tssr137755 16 24567877 to 24567882 5 + TSS region transcription start site region 137755
Tssr137756 16 24594776 to 24594788 12 + TSS region transcription start site region 137756
Tssr140601 16 24608295 to 24608326 31 - TSS region transcription start site region 140601
Tssr137757 16 24609281 to 24609285 4 + TSS region transcription start site region 137757
Tssr4831 16 24629606 to 24629618 12 + TSS region transcription start site region 4831
Tssr137758 16 24657036 to 24657060 24 + TSS region transcription start site region 137758
Tssr137759 16 24670517 to 24670548 31 + TSS region transcription start site region 137759
Tssr137760 16 24681747 to 24681757 10 + TSS region transcription start site region 137760
Tssr137761 16 24681769 to 24681785 16 + TSS region transcription start site region 137761
Tssr137762 16 24721842 to 24721882 40 + TSS region transcription start site region 137762
Tssr140602 16 24727449 to 24727453 4 - TSS region transcription start site region 140602
Tssr137763 16 24733635 to 24733650 15 + TSS region transcription start site region 137763
Tssr137764 16 24737448 to 24737460 12 + TSS region transcription start site region 137764
Mir28a 16 24827855 to 24827940 85 + miRNA gene microRNA 28a
Tssr137765 16 24879374 to 24879403 29 + TSS region transcription start site region 137765
Gm22672 16 24884173 to 24884306 133 + snoRNA gene predicted gene, 22672
9430040K09Rik 16 24893362 to 24898444 5082 unclassified gene RIKEN cDNA 9430040K09 gene
Tssr140603 16 24895202 to 24895208 6 - TSS region transcription start site region 140603
Tssr137766 16 24934145 to 24934151 6 + TSS region transcription start site region 137766
Tssr137767 16 24951274 to 24951278 4 + TSS region transcription start site region 137767
Tssr137768 16 24973191 to 24973203 12 + TSS region transcription start site region 137768
Tssr137769 16 24982699 to 24982713 14 + TSS region transcription start site region 137769
Tssr137770 16 24983002 to 24983015 13 + TSS region transcription start site region 137770
Tssr137771 16 24984235 to 24984237 2 + TSS region transcription start site region 137771
Tssr137772 16 25011201 to 25011205 4 + TSS region transcription start site region 137772
Tssr137773 16 25011409 to 25011415 6 + TSS region transcription start site region 137773
Tssr137774 16 25021984 to 25021995 11 + TSS region transcription start site region 137774
Tssr137775 16 25024170 to 25024175 5 + TSS region transcription start site region 137775
Tssr137776 16 25026499 to 25026506 7 + TSS region transcription start site region 137776
Tssr140604 16 25040111 to 25040122 11 - TSS region transcription start site region 140604
Tssr137777 16 25040253 to 25040278 25 + TSS region transcription start site region 137777
Tssr137778 16 25040285 to 25040294 9 + TSS region transcription start site region 137778
Tssr140605 16 25041230 to 25041246 16 - TSS region transcription start site region 140605
Tssr137779 16 25041686 to 25041711 25 + TSS region transcription start site region 137779
Tssr137780 16 25042181 to 25042237 56 + TSS region transcription start site region 137780
Tssr137781 16 25042245 to 25042266 21 + TSS region transcription start site region 137781
Tssr137782 16 25042303 to 25042334 31 + TSS region transcription start site region 137782
Tssr137783 16 25042343 to 25042346 3 + TSS region transcription start site region 137783
Tssr137784 16 25042371 to 25042382 11 + TSS region transcription start site region 137784
Tssr137785 16 25042985 to 25042997 12 + TSS region transcription start site region 137785
Tssr137786 16 25043364 to 25043399 35 + TSS region transcription start site region 137786
Tssr140606 16 25045207 to 25045222 15 - TSS region transcription start site region 140606
Tssr140607 16 25045223 to 25045253 30 - TSS region transcription start site region 140607
Tssr137787 16 25048155 to 25048195 40 + TSS region transcription start site region 137787
Tssr137788 16 25048366 to 25048387 21 + TSS region transcription start site region 137788
Tssr140608 16 25057977 to 25057993 16 - TSS region transcription start site region 140608
Cpgi8128 16 25058934 to 25059331 397 CpG island CpG island 8128
Tssr140609 16 25059264 to 25059280 16 - TSS region transcription start site region 140609
Tssr137789 16 25059361 to 25059380 19 + TSS region transcription start site region 137789
A230028O05Rik 16 25059639 to 25069058 9419 + lincRNA gene RIKEN cDNA A230028O05 gene
Tssr140610 16 25059722 to 25059755 33 - TSS region transcription start site region 140610
Tssr137790 16 25059905 to 25059950 45 + TSS region transcription start site region 137790
Gm41435 16 25089318 to 25115446 26128 + lncRNA gene predicted gene, 41435
Gm32196 16 25143714 to 25178129 34415 - lncRNA gene predicted gene, 32196
D16Mit156 16 25150797 to 25150901 104 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 156
Tssr140611 16 25178088 to 25178099 11 - TSS region transcription start site region 140611
Tssr137791 16 25286810 to 25286826 16 + TSS region transcription start site region 137791
Tprg 16 25286817 to 25422344 135527 + protein coding gene transformation related protein 63 regulated
Tssr137792 16 25286848 to 25286874 26 + TSS region transcription start site region 137792
Tssr137793 16 25385889 to 25385903 14 + TSS region transcription start site region 137793
Ewc6 16 25407302 to 25407302 0 QTL ethanol withdrawal and consumption 6
Tssr137794 16 25410738 to 25410755 17 + TSS region transcription start site region 137794
Tssr137795 16 25423493 to 25423513 20 + TSS region transcription start site region 137795
Gm18896 16 25441853 to 25443273 1420 - pseudogene predicted gene, 18896
Tssr140612 16 25517699 to 25517702 3 - TSS region transcription start site region 140612
Tssr137796 16 25523388 to 25523393 5 + TSS region transcription start site region 137796
D16Mit123 16 25581395 to 25581483 88 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 123
Gm20007 16 25672922 to 25673594 672 + pseudogene predicted gene, 20007
Trp63 16 25683763 to 25892088 208325 + protein coding gene transformation related protein 63
Tssr137797 16 25684146 to 25684199 53 + TSS region transcription start site region 137797
Gm24928 16 25702642 to 25702748 106 - snRNA gene predicted gene, 24928
Gm27005 16 25726696 to 25727616 920 + pseudogene predicted gene, 27005
Tssr137798 16 25752097 to 25752117 20 + TSS region transcription start site region 137798
Tssr137799 16 25752142 to 25752151 9 + TSS region transcription start site region 137799
Tssr4832 16 25799643 to 25799645 2 + TSS region transcription start site region 4832
Tssr137800 16 25801907 to 25801928 21 + TSS region transcription start site region 137800
Tssr137801 16 25802043 to 25802056 13 + TSS region transcription start site region 137801
Tssr137802 16 25824933 to 25824941 8 + TSS region transcription start site region 137802