Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:23490519-24290985

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Masp1 16 23451785 to 23521074 69289 - protein coding gene mannan-binding lectin serine peptidase 1
Tssr140558 16 23496258 to 23496261 3 - TSS region transcription start site region 140558
Tssr140559 16 23500488 to 23500489 1 - TSS region transcription start site region 140559
Gm49514 16 23514270 to 23515062 792 + pseudogene predicted gene, 49514
Gm31077 16 23515293 to 23588307 73014 + lncRNA gene predicted gene, 31077
Gm45338 16 23520210 to 23560081 39871 + unclassified non-coding RNA gene predicted gene 45338
Tssr137721 16 23520334 to 23520363 29 + TSS region transcription start site region 137721
Tssr140560 16 23520579 to 23520673 94 - TSS region transcription start site region 140560
Tssr140561 16 23520691 to 23520701 10 - TSS region transcription start site region 140561
Tssr140562 16 23520778 to 23520793 15 - TSS region transcription start site region 140562
Tssr140563 16 23520801 to 23520815 14 - TSS region transcription start site region 140563
Tssr140564 16 23520850 to 23520860 10 - TSS region transcription start site region 140564
Tssr140565 16 23520998 to 23521006 8 - TSS region transcription start site region 140565
Cpgi8120 16 23551111 to 23551295 184 CpG island CpG island 8120
Rtp4 16 23601293 to 23614222 12929 + protein coding gene receptor transporter protein 4
Tssr140566 16 23609787 to 23609826 39 - TSS region transcription start site region 140566
Tssr137722 16 23609895 to 23609961 66 + TSS region transcription start site region 137722
Tssr137723 16 23609962 to 23609999 37 + TSS region transcription start site region 137723
Tssr137724 16 23610000 to 23610032 32 + TSS region transcription start site region 137724
Tssr137725 16 23610069 to 23610082 13 + TSS region transcription start site region 137725
Tssr137726 16 23611380 to 23611407 27 + TSS region transcription start site region 137726
Tssr137727 16 23612870 to 23612895 25 + TSS region transcription start site region 137727
Tssr137728 16 23612949 to 23612978 29 + TSS region transcription start site region 137728
Tssr137729 16 23613141 to 23613178 37 + TSS region transcription start site region 137729
Tssr137730 16 23613287 to 23613319 32 + TSS region transcription start site region 137730
Tssr137731 16 23613351 to 23613365 14 + TSS region transcription start site region 137731
Tssr137732 16 23613369 to 23613413 44 + TSS region transcription start site region 137732
Gm6640 16 23717169 to 23718754 1585 - pseudogene predicted gene 6640
D16Mit146.2 16 23725843 to 23725955 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 146.2
D16Mit146 16 23725933 to 23726053 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 146
D16Mit101 16 23736976 to 23737125 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 101
Gm49515 16 23779176 to 23780127 951 - pseudogene predicted gene, 49515
Gm31430 16 23804194 to 23846878 42684 - lncRNA gene predicted gene, 31430
Gm49516 16 23852991 to 23853966 975 + pseudogene predicted gene, 49516
Sst 16 23889581 to 23890844 1263 - protein coding gene somatostatin
Cpgi8121 16 23890519 to 23890985 466 CpG island CpG island 8121
Tssr140567 16 23890805 to 23890861 56 - TSS region transcription start site region 140567
Rtp2 16 23925548 to 23930794 5246 - protein coding gene receptor transporter protein 2
Cpgi8122 16 23927295 to 23927739 444 CpG island CpG island 8122
D16Mit102 16 23963526 to 23963654 128 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 102
Bcl6 16 23965052 to 23988612 23560 - protein coding gene B cell leukemia/lymphoma 6
Tssr140568 16 23973226 to 23973232 6 - TSS region transcription start site region 140568
Tssr140569 16 23974938 to 23974953 15 - TSS region transcription start site region 140569
Tssr140570 16 23976244 to 23976294 50 - TSS region transcription start site region 140570
Tssr140571 16 23977679 to 23977689 10 - TSS region transcription start site region 140571
Tssr140572 16 23977843 to 23977863 20 - TSS region transcription start site region 140572
Cpgi8123 16 23981080 to 23981508 428 CpG island CpG island 8123
Tssr4825 16 23981188 to 23981192 4 - TSS region transcription start site region 4825
Tssr140573 16 23981197 to 23981204 7 - TSS region transcription start site region 140573
Tssr140574 16 23981223 to 23981256 33 - TSS region transcription start site region 140574
Tssr140575 16 23981284 to 23981292 8 - TSS region transcription start site region 140575
Cpgi8124 16 23984176 to 23985156 980 CpG island CpG island 8124
2900064B18Rik 16 23985595 to 23986728 1133 unclassified gene RIKEN cDNA 2900064B18 gene
Tssr137733 16 23986466 to 23986485 19 + TSS region transcription start site region 137733
Cpgi8125 16 23986991 to 23987422 431 CpG island CpG island 8125
Cpgi8126 16 23987462 to 23989158 1696 CpG island CpG island 8126
Tssr140576 16 23988233 to 23988235 2 - TSS region transcription start site region 140576
Gm37419 16 23988482 to 23988595 113 + protein coding gene predicted gene, 37419
Tssr140577 16 23988537 to 23988544 7 - TSS region transcription start site region 140577
Tssr140578 16 23988563 to 23988574 11 - TSS region transcription start site region 140578
Tssr140579 16 23988600 to 23988607 7 - TSS region transcription start site region 140579
Tssr140580 16 23988625 to 23988641 16 - TSS region transcription start site region 140580
Tssr137734 16 23988957 to 23988986 29 + TSS region transcription start site region 137734
Tssr137735 16 23988994 to 23989005 11 + TSS region transcription start site region 137735
Gm31527 16 23989011 to 23999436 10425 + lncRNA gene predicted gene, 31527
Tssr137736 16 24012744 to 24012750 6 + TSS region transcription start site region 137736
Tssr140581 16 24013220 to 24013226 6 - TSS region transcription start site region 140581
Tssr140582 16 24013374 to 24013381 7 - TSS region transcription start site region 140582
Tssr140583 16 24013399 to 24013409 10 - TSS region transcription start site region 140583
Tssr4826 16 24025732 to 24025747 15 + TSS region transcription start site region 4826
Gm49518 16 24039906 to 24060637 20731 + lincRNA gene predicted gene, 49518
Gm46545 16 24076938 to 24082795 5857 - lincRNA gene predicted gene, 46545
Gm31583 16 24085083 to 24090089 5006 - lincRNA gene predicted gene, 31583
Tssr140584 16 24090032 to 24090046 14 - TSS region transcription start site region 140584
Tssr140585 16 24090059 to 24090100 41 - TSS region transcription start site region 140585
Tssr140586 16 24090106 to 24090118 12 - TSS region transcription start site region 140586
Tssr4827 16 24090171 to 24090180 9 - TSS region transcription start site region 4827
Tssr137737 16 24096355 to 24096363 8 + TSS region transcription start site region 137737
Gm32126 16 24158149 to 24159559 1410 - sense intronic lncRNA gene predicted gene, 32126
Tssr137738 16 24179425 to 24179427 2 + TSS region transcription start site region 137738
Gm31814 16 24186057 to 24263166 77109 - sense intronic lncRNA gene predicted gene, 31814
Tssr140587 16 24193030 to 24193035 5 - TSS region transcription start site region 140587
Tssr140588 16 24193387 to 24193404 17 - TSS region transcription start site region 140588
Tssr4828 16 24193421 to 24193435 14 - TSS region transcription start site region 4828
Tssr140589 16 24193627 to 24193650 23 - TSS region transcription start site region 140589
Tssr4829 16 24193857 to 24193874 17 + TSS region transcription start site region 4829
Tssr140590 16 24199893 to 24199926 33 - TSS region transcription start site region 140590
Tssr140591 16 24216493 to 24216531 38 - TSS region transcription start site region 140591
Gm38456 16 24271143 to 24296233 25090 - lncRNA gene predicted gene, 38456