Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:23102548-23532567

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30693 16 23096552 to 23103165 6613 - lncRNA gene predicted gene, 30693
Cpgi8115 16 23107045 to 23108554 1509 CpG island CpG island 8115
Tssr137654 16 23107390 to 23107401 11 + TSS region transcription start site region 137654
Tssr137655 16 23107413 to 23107430 17 + TSS region transcription start site region 137655
Eif4a2 16 23107444 to 23114136 6692 + protein coding gene eukaryotic translation initiation factor 4A2
Tssr137656 16 23107754 to 23107761 7 + TSS region transcription start site region 137656
Tssr140540 16 23107977 to 23108006 29 - TSS region transcription start site region 140540
Tssr140541 16 23108104 to 23108118 14 - TSS region transcription start site region 140541
Tssr140542 16 23108134 to 23108143 9 - TSS region transcription start site region 140542
Snord2 16 23108953 to 23109020 67 + snoRNA gene small nucleolar RNA, C/D box 2
Gm24201 16 23110383 to 23110507 124 + snoRNA gene predicted gene, 24201
Gm49346 16 23110753 to 23110858 105 + miRNA gene predicted gene, 49346
Snora81 16 23110770 to 23110933 163 + snoRNA gene small nucleolar RNA, H/ACA box 81
Gm26447 16 23111301 to 23111429 128 + snoRNA gene predicted gene, 26447
Gm24616 16 23111617 to 23111755 138 + snoRNA gene predicted gene, 24616
Tssr137657 16 23112242 to 23112294 52 + TSS region transcription start site region 137657
Rfc4 16 23113948 to 23127730 13782 - protein coding gene replication factor C (activator 1) 4
Cpgi8116 16 23127510 to 23128480 970 CpG island CpG island 8116
Tssr140543 16 23127702 to 23127746 44 - TSS region transcription start site region 140543
Tssr137658 16 23127783 to 23127824 41 + TSS region transcription start site region 137658
6330408M09Rik 16 23127793 to 23128922 1129 + bidirectional promoter lncRNA gene RIKEN cDNA 6330408M09 gene
Gm49624 16 23133906 to 23134320 414 - pseudogene predicted gene, 49624
Adipoq 16 23146536 to 23157968 11432 + protein coding gene adiponectin, C1Q and collagen domain containing
Tssr4823 16 23146567 to 23146578 11 + TSS region transcription start site region 4823
Tssr137659 16 23146580 to 23146621 41 + TSS region transcription start site region 137659
Tssr140544 16 23157201 to 23157220 19 - TSS region transcription start site region 140544
Tssr137660 16 23157208 to 23157230 22 + TSS region transcription start site region 137660
Tssr140545 16 23157230 to 23157232 2 - TSS region transcription start site region 140545
Tssr140546 16 23157253 to 23157262 9 - TSS region transcription start site region 140546
Tssr137661 16 23157333 to 23157349 16 + TSS region transcription start site region 137661
Cpgi8117 16 23165235 to 23165438 203 CpG island CpG island 8117
Tssr140547 16 23171014 to 23171028 14 - TSS region transcription start site region 140547
C730014E05Rik 16 23174788 to 23218929 44141 + lncRNA gene RIKEN cDNA C730014E05 gene
Tssr137662 16 23175177 to 23175193 16 + TSS region transcription start site region 137662
Tssr137663 16 23175223 to 23175237 14 + TSS region transcription start site region 137663
Tssr137664 16 23175253 to 23175313 60 + TSS region transcription start site region 137664
B630019A10Rik 16 23175280 to 23224446 49166 + antisense lncRNA gene RIKEN cDNA B630019A10 gene
Tssr137665 16 23175350 to 23175377 27 + TSS region transcription start site region 137665
Tssr137666 16 23175425 to 23175434 9 + TSS region transcription start site region 137666
Tssr137667 16 23179137 to 23179142 5 + TSS region transcription start site region 137667
Gm6630 16 23179556 to 23180009 453 + pseudogene predicted pseudogene 6630
Tssr140548 16 23181594 to 23181604 10 - TSS region transcription start site region 140548
Tssr137668 16 23192068 to 23192075 7 + TSS region transcription start site region 137668
Tssr137669 16 23192094 to 23192141 47 + TSS region transcription start site region 137669
Tssr137670 16 23192144 to 23192171 27 + TSS region transcription start site region 137670
Tssr4824 16 23192203 to 23192216 13 + TSS region transcription start site region 4824
Gm15746 16 23197095 to 23198121 1026 - pseudogene predicted gene 15746
BC106179 16 23220656 to 23225484 4828 - unclassified non-coding RNA gene cDNA sequence BC106179
Tssr137671 16 23223694 to 23223718 24 + TSS region transcription start site region 137671
Cpgi8118 16 23224621 to 23226316 1695 CpG island CpG island 8118
Tssr137672 16 23224724 to 23224804 80 + TSS region transcription start site region 137672
St6gal1 16 23224740 to 23360350 135610 + protein coding gene beta galactoside alpha 2,6 sialyltransferase 1
Tssr137673 16 23224805 to 23224816 11 + TSS region transcription start site region 137673
Tssr137674 16 23224817 to 23224828 11 + TSS region transcription start site region 137674
Tssr137675 16 23224834 to 23224845 11 + TSS region transcription start site region 137675
Tssr137676 16 23224872 to 23224923 51 + TSS region transcription start site region 137676
Tssr137677 16 23224937 to 23224959 22 + TSS region transcription start site region 137677
Tssr137678 16 23224967 to 23224985 18 + TSS region transcription start site region 137678
Tssr140549 16 23225225 to 23225240 15 - TSS region transcription start site region 140549
Tssr140550 16 23225268 to 23225278 10 - TSS region transcription start site region 140550
Tssr140551 16 23225302 to 23225316 14 - TSS region transcription start site region 140551
Tssr140552 16 23225334 to 23225347 13 - TSS region transcription start site region 140552
Tssr137679 16 23225427 to 23225448 21 + TSS region transcription start site region 137679
Tssr137680 16 23225474 to 23225496 22 + TSS region transcription start site region 137680
Tssr137681 16 23226014 to 23226077 63 + TSS region transcription start site region 137681
Tssr137682 16 23226088 to 23226113 25 + TSS region transcription start site region 137682
Tssr137683 16 23226117 to 23226128 11 + TSS region transcription start site region 137683
Tssr137684 16 23226342 to 23226353 11 + TSS region transcription start site region 137684
Tssr140553 16 23226768 to 23226780 12 - TSS region transcription start site region 140553
Tssr137685 16 23227852 to 23227856 4 + TSS region transcription start site region 137685
Tssr137686 16 23228289 to 23228294 5 + TSS region transcription start site region 137686
Tssr137687 16 23231002 to 23231006 4 + TSS region transcription start site region 137687
Tssr140554 16 23233569 to 23233601 32 - TSS region transcription start site region 140554
Tssr137688 16 23234138 to 23234141 3 + TSS region transcription start site region 137688
Tssr137689 16 23237360 to 23237368 8 + TSS region transcription start site region 137689
Tssr137690 16 23237370 to 23237382 12 + TSS region transcription start site region 137690
Tssr137691 16 23237403 to 23237409 6 + TSS region transcription start site region 137691
Tssr140555 16 23237909 to 23237912 3 - TSS region transcription start site region 140555
Tssr137692 16 23239354 to 23239357 3 + TSS region transcription start site region 137692
Tssr137693 16 23250789 to 23250817 28 + TSS region transcription start site region 137693
Tssr137694 16 23256932 to 23256953 21 + TSS region transcription start site region 137694
Tssr137695 16 23263017 to 23263045 28 + TSS region transcription start site region 137695
Tssr137696 16 23268416 to 23268432 16 + TSS region transcription start site region 137696
Tssr137697 16 23268463 to 23268479 16 + TSS region transcription start site region 137697
Tssr137698 16 23268495 to 23268539 44 + TSS region transcription start site region 137698
Tssr137699 16 23269310 to 23269328 18 + TSS region transcription start site region 137699
Tssr137700 16 23269334 to 23269356 22 + TSS region transcription start site region 137700
Tssr137701 16 23269577 to 23269610 33 + TSS region transcription start site region 137701
Tssr137702 16 23269617 to 23269634 17 + TSS region transcription start site region 137702
Tssr137703 16 23269637 to 23269659 22 + TSS region transcription start site region 137703
5830449F15Rik 16 23280160 to 23280684 524 unclassified gene RIKEN cDNA 5830449F15 gene
Tssr137704 16 23280190 to 23280194 4 + TSS region transcription start site region 137704
Tssr137705 16 23290464 to 23290534 70 + TSS region transcription start site region 137705
Tssr137706 16 23307705 to 23307724 19 + TSS region transcription start site region 137706
Tssr137707 16 23307753 to 23307768 15 + TSS region transcription start site region 137707
Tssr137708 16 23307914 to 23307934 20 + TSS region transcription start site region 137708
Tssr137709 16 23308042 to 23308053 11 + TSS region transcription start site region 137709
Tssr137710 16 23308109 to 23308112 3 + TSS region transcription start site region 137710
Tssr137711 16 23308136 to 23308150 14 + TSS region transcription start site region 137711
Tssr137712 16 23317548 to 23317567 19 + TSS region transcription start site region 137712
Tssr137713 16 23317571 to 23317582 11 + TSS region transcription start site region 137713
Tssr137714 16 23317600 to 23317632 32 + TSS region transcription start site region 137714
Tssr137715 16 23317637 to 23317644 7 + TSS region transcription start site region 137715
Tssr137716 16 23320797 to 23320805 8 + TSS region transcription start site region 137716
Tssr137717 16 23320837 to 23320843 6 + TSS region transcription start site region 137717
Tssr137718 16 23320863 to 23320876 13 + TSS region transcription start site region 137718
Gm30814 16 23325821 to 23327435 1614 - lncRNA gene predicted gene, 30814
Tssr140556 16 23375057 to 23375063 6 - TSS region transcription start site region 140556
Tssr137719 16 23375223 to 23375255 32 + TSS region transcription start site region 137719
Tssr137720 16 23387520 to 23387552 32 + TSS region transcription start site region 137720
Gm23430 16 23423422 to 23423735 313 - unclassified non-coding RNA gene predicted gene, 23430
Gm23066 16 23425651 to 23425721 70 + snRNA gene predicted gene, 23066
Rtp1 16 23429133 to 23433960 4827 + protein coding gene receptor transporter protein 1
Cpgi8119 16 23431122 to 23431588 466 CpG island CpG island 8119
Tssr140557 16 23449828 to 23449833 5 - TSS region transcription start site region 140557
Masp1 16 23451785 to 23521074 69289 - protein coding gene mannan-binding lectin serine peptidase 1
Tssr140558 16 23496258 to 23496261 3 - TSS region transcription start site region 140558
Tssr140559 16 23500488 to 23500489 1 - TSS region transcription start site region 140559
Gm49514 16 23514270 to 23515062 792 + pseudogene predicted gene, 49514
Gm31077 16 23515293 to 23588307 73014 + lncRNA gene predicted gene, 31077
Gm45338 16 23520210 to 23560081 39871 + unclassified non-coding RNA gene predicted gene 45338
Tssr137721 16 23520334 to 23520363 29 + TSS region transcription start site region 137721
Tssr140560 16 23520579 to 23520673 94 - TSS region transcription start site region 140560
Tssr140561 16 23520691 to 23520701 10 - TSS region transcription start site region 140561
Tssr140562 16 23520778 to 23520793 15 - TSS region transcription start site region 140562
Tssr140563 16 23520801 to 23520815 14 - TSS region transcription start site region 140563
Tssr140564 16 23520850 to 23520860 10 - TSS region transcription start site region 140564
Tssr140565 16 23520998 to 23521006 8 - TSS region transcription start site region 140565