Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:21794168-22694472

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8100 16 21794016 to 21794845 829 CpG island CpG island 8100
Tssr137519 16 21794320 to 21794381 61 + TSS region transcription start site region 137519
1300002E11Rik 16 21794347 to 21809040 14693 + lincRNA gene RIKEN cDNA 1300002E11 gene
Tssr137520 16 21794384 to 21794391 7 + TSS region transcription start site region 137520
Map3k13 16 21825170 to 21933439 108269 + protein coding gene mitogen-activated protein kinase kinase kinase 13
Tssr137521 16 21826017 to 21826045 28 + TSS region transcription start site region 137521
D16Mit1 16 21827564 to 21827664 100 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1
Loh2 16 21827564 to 51386028 29558464 heritable phenotypic marker loss of heterozygosity, region 2
Mopkd2 16 21827564 to 21827664 100 QTL modifier of polycystic kidney disease progression 2
Gm49607 16 21833850 to 21836555 2705 - lincRNA gene predicted gene, 49607
Tssr137522 16 21835970 to 21835973 3 + TSS region transcription start site region 137522
Gm5962 16 21841050 to 21841544 494 - pseudogene predicted gene 5962
Gm26744 16 21843451 to 21845776 2325 - lincRNA gene predicted gene, 26744
Tssr137523 16 21855110 to 21855126 16 + TSS region transcription start site region 137523
Tssr137524 16 21855127 to 21855142 15 + TSS region transcription start site region 137524
Tssr137525 16 21855145 to 21855166 21 + TSS region transcription start site region 137525
Tssr137526 16 21867972 to 21867981 9 + TSS region transcription start site region 137526
Tssr137527 16 21896462 to 21896475 13 + TSS region transcription start site region 137527
Gm6467 16 21896506 to 21897116 610 + pseudogene predicted gene 6467
2610020F03Rik 16 21907922 to 21908777 855 - lincRNA gene RIKEN cDNA 2610020F03 gene
Tssr137528 16 21931056 to 21931059 3 + TSS region transcription start site region 137528
Tmem41a 16 21934327 to 21947552 13225 - protein coding gene transmembrane protein 41a
Cpgi8101 16 21946814 to 21947943 1129 CpG island CpG island 8101
Tssr140441 16 21947453 to 21947517 64 - TSS region transcription start site region 140441
Tssr140442 16 21947536 to 21947577 41 - TSS region transcription start site region 140442
Liph 16 21953817 to 21995658 41841 - protein coding gene lipase, member H
Cpgi8102 16 21976100 to 21976436 336 CpG island CpG island 8102
D16Mit35 16 21977849 to 21977997 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 35
Tssr137529 16 21982353 to 21982363 10 + TSS region transcription start site region 137529
Tssr140443 16 21984310 to 21984335 25 - TSS region transcription start site region 140443
Cpgi8103 16 21995322 to 21995536 214 CpG island CpG island 8103
Tssr140444 16 21995389 to 21995392 3 - TSS region transcription start site region 140444
Tssr140445 16 21995455 to 21995472 17 - TSS region transcription start site region 140445
Tssr140446 16 21995478 to 21995517 39 - TSS region transcription start site region 140446
Tssr140447 16 21995539 to 21995548 9 - TSS region transcription start site region 140447
Cpgi8104 16 22009043 to 22010146 1103 CpG island CpG island 8104
Tssr137530 16 22009450 to 22009466 16 + TSS region transcription start site region 137530
Tssr137531 16 22009471 to 22009543 72 + TSS region transcription start site region 137531
Senp2 16 22009484 to 22049269 39785 + protein coding gene SUMO/sentrin specific peptidase 2
Tssr137532 16 22009766 to 22009825 59 + TSS region transcription start site region 137532
Tssr137533 16 22023801 to 22023816 15 + TSS region transcription start site region 137533
Tssr137534 16 22047592 to 22047599 7 + TSS region transcription start site region 137534
Cpgi8105 16 22053439 to 22053711 272 CpG island CpG island 8105
Ndufa11b 16 22053510 to 22053933 423 + pseudogene NADH:ubiquinone oxidoreductase subunit A11B
Tssr137535 16 22053664 to 22053702 38 + TSS region transcription start site region 137535
Tssr137536 16 22059007 to 22059016 9 + TSS region transcription start site region 137536
Igf2bp2 16 22059009 to 22163299 104290 - protein coding gene insulin-like growth factor 2 mRNA binding protein 2
Tssr140448 16 22059860 to 22059877 17 - TSS region transcription start site region 140448
Tssr140449 16 22060036 to 22060076 40 - TSS region transcription start site region 140449
Tssr140450 16 22060142 to 22060155 13 - TSS region transcription start site region 140450
Tssr140451 16 22069257 to 22069260 3 - TSS region transcription start site region 140451
Tssr140452 16 22076105 to 22076126 21 - TSS region transcription start site region 140452
Tssr137537 16 22096001 to 22096012 11 + TSS region transcription start site region 137537
Tssr137538 16 22096023 to 22096069 46 + TSS region transcription start site region 137538
Cpgi8106 16 22119493 to 22119829 336 CpG island CpG island 8106
Tssr137539 16 22119809 to 22119822 13 + TSS region transcription start site region 137539
Tssr140453 16 22121268 to 22121285 17 - TSS region transcription start site region 140453
Tssr140454 16 22121302 to 22121332 30 - TSS region transcription start site region 140454
Cpgi8107 16 22161361 to 22164005 2644 CpG island CpG island 8107
Tssr140455 16 22162939 to 22163056 117 - TSS region transcription start site region 140455
Tssr140456 16 22163721 to 22163749 28 - TSS region transcription start site region 140456
Gm25810 16 22224244 to 22224351 107 + snRNA gene predicted gene, 25810
Tssr137540 16 22230334 to 22230384 50 + TSS region transcription start site region 137540
Gm5809 16 22230391 to 22230918 527 + pseudogene predicted pseudogene 5809
Gm26980 16 22236921 to 22237315 394 + pseudogene predicted gene, 26980
Gm36796 16 22244168 to 22244472 304 + pseudogene predicted gene, 36796
Tra2b 16 22245741 to 22266000 20259 - protein coding gene transformer 2 beta
Tssr140457 16 22246872 to 22246875 3 - TSS region transcription start site region 140457
Tssr140458 16 22251820 to 22251831 11 - TSS region transcription start site region 140458
Tssr140459 16 22252383 to 22252387 4 - TSS region transcription start site region 140459
Tssr140460 16 22257826 to 22257833 7 - TSS region transcription start site region 140460
D16Ertd266e 16 22259253 to 22259459 206 DNA segment DNA segment, Chr 16, ERATO Doi 266, expressed
Tssr140461 16 22261077 to 22261081 4 - TSS region transcription start site region 140461
Tssr140462 16 22261756 to 22261763 7 - TSS region transcription start site region 140462
Cpgi8108 16 22264971 to 22266522 1551 CpG island CpG island 8108
Tssr140463 16 22265533 to 22265535 2 - TSS region transcription start site region 140463
Tssr137541 16 22265558 to 22265565 7 + TSS region transcription start site region 137541
Tssr137542 16 22265566 to 22265586 20 + TSS region transcription start site region 137542
Tssr140464 16 22265920 to 22265949 29 - TSS region transcription start site region 140464
Tssr140465 16 22265950 to 22265961 11 - TSS region transcription start site region 140465
Tssr137543 16 22266073 to 22266115 42 + TSS region transcription start site region 137543
Tssr137544 16 22294971 to 22294973 2 + TSS region transcription start site region 137544
Gng5-ps 16 22295027 to 22295231 204 + pseudogene G protein subunit gamma 5, pseudogene
Gm49582 16 22296138 to 22305603 9465 + pseudogene predicted gene, 49582
Etv5 16 22381313 to 22439570 58257 - protein coding gene ets variant 5
Tssr140466 16 22402574 to 22402601 27 - TSS region transcription start site region 140466
Tssr140467 16 22402625 to 22402637 12 - TSS region transcription start site region 140467
Tssr140468 16 22402654 to 22402674 20 - TSS region transcription start site region 140468
Tssr137545 16 22402870 to 22402893 23 + TSS region transcription start site region 137545
Tssr140469 16 22406048 to 22406060 12 - TSS region transcription start site region 140469
Tssr140470 16 22406153 to 22406162 9 - TSS region transcription start site region 140470
Tssr140471 16 22411747 to 22411784 37 - TSS region transcription start site region 140471
Tssr140472 16 22411793 to 22411820 27 - TSS region transcription start site region 140472
Tssr140473 16 22411822 to 22411850 28 - TSS region transcription start site region 140473
Tssr140474 16 22411860 to 22411875 15 - TSS region transcription start site region 140474
Tssr140475 16 22411876 to 22411896 20 - TSS region transcription start site region 140475
Tssr140476 16 22411917 to 22411926 9 - TSS region transcription start site region 140476
Tssr140477 16 22412895 to 22412947 52 - TSS region transcription start site region 140477
Tssr140478 16 22412959 to 22412981 22 - TSS region transcription start site region 140478
Cpgi8109 16 22432068 to 22432236 168 CpG island CpG island 8109
Tssr140479 16 22436550 to 22436565 15 - TSS region transcription start site region 140479
Cpgi8110 16 22438430 to 22440592 2162 CpG island CpG island 8110
Tssr140480 16 22439581 to 22439603 22 - TSS region transcription start site region 140480
Tssr140481 16 22439608 to 22439625 17 - TSS region transcription start site region 140481
Tssr140482 16 22439731 to 22439733 2 - TSS region transcription start site region 140482
Tssr137546 16 22439951 to 22439965 14 + TSS region transcription start site region 137546
Dgkg 16 22468461 to 22657221 188760 - protein coding gene diacylglycerol kinase, gamma
Tssr140483 16 22469263 to 22469280 17 - TSS region transcription start site region 140483
Tssr140484 16 22504685 to 22504693 8 - TSS region transcription start site region 140484
9230117E06Rik 16 22511480 to 22517681 6201 + antisense lncRNA gene RIKEN cDNA 9230117E06 gene
Tssr137547 16 22515007 to 22515024 17 + TSS region transcription start site region 137547
Gm30251 16 22528218 to 22528784 566 + pseudogene predicted gene, 30251
Mir8095 16 22532056 to 22532184 128 - miRNA gene microRNA 8095
Gm9525 16 22535028 to 22535297 269 - pseudogene predicted gene 9525
Tssr140485 16 22535391 to 22535397 6 - TSS region transcription start site region 140485
Gm49565 16 22540473 to 22543886 3413 + unclassified gene predicted gene, 49565
Tssr137548 16 22546954 to 22546990 36 + TSS region transcription start site region 137548
Gm15651 16 22548553 to 22551149 2596 + antisense lncRNA gene predicted gene 15651
Tssr140486 16 22561061 to 22561083 22 - TSS region transcription start site region 140486
Tssr140487 16 22561106 to 22561120 14 - TSS region transcription start site region 140487
Cpgi8111 16 22572568 to 22573090 522 CpG island CpG island 8111
Gm41433 16 22584409 to 22590154 5745 + lncRNA gene predicted gene, 41433
Gm22481 16 22595029 to 22595220 191 + unclassified non-coding RNA gene predicted gene, 22481
Mir6362 16 22605326 to 22605432 106 + miRNA gene microRNA 6362
D16Mit98 16 22610972 to 22611082 110 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 98
D16Mit98.2 16 22611063 to 22611225 162 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 98.2
Tssr4816 16 22617995 to 22618032 37 - TSS region transcription start site region 4816
Tssr140488 16 22622296 to 22622310 14 - TSS region transcription start site region 140488
Tssr140489 16 22622321 to 22622333 12 - TSS region transcription start site region 140489
Tssr4817 16 22654650 to 22654668 18 + TSS region transcription start site region 4817
Cpgi8112 16 22656578 to 22657491 913 CpG island CpG island 8112
Tssr140490 16 22657009 to 22657045 36 - TSS region transcription start site region 140490
Tssr140491 16 22657067 to 22657079 12 - TSS region transcription start site region 140491
Tssr140492 16 22657084 to 22657096 12 - TSS region transcription start site region 140492
Tssr140493 16 22657165 to 22657178 13 - TSS region transcription start site region 140493
Tssr140494 16 22657182 to 22657242 60 - TSS region transcription start site region 140494
Tssr140495 16 22657248 to 22657260 12 - TSS region transcription start site region 140495
Gm8118 16 22685350 to 22686194 844 - pseudogene predicted gene 8118