Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:21697849-22257997

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr140429 16 21743061 to 21743066 5 - TSS region transcription start site region 140429
Ehhadh 16 21761287 to 21787807 26520 - protein coding gene enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
Tssr140430 16 21761871 to 21761876 5 - TSS region transcription start site region 140430
Tssr140431 16 21762186 to 21762205 19 - TSS region transcription start site region 140431
Tssr140432 16 21762579 to 21762586 7 - TSS region transcription start site region 140432
Tssr140433 16 21762606 to 21762613 7 - TSS region transcription start site region 140433
Tssr140434 16 21762895 to 21762905 10 - TSS region transcription start site region 140434
Tssr140435 16 21762907 to 21762911 4 - TSS region transcription start site region 140435
Tssr140436 16 21762981 to 21763015 34 - TSS region transcription start site region 140436
Tssr140437 16 21766547 to 21766574 27 - TSS region transcription start site region 140437
Gm24898 16 21774113 to 21774218 105 + snRNA gene predicted gene, 24898
Tssr140438 16 21775489 to 21775495 6 - TSS region transcription start site region 140438
Tssr140439 16 21780322 to 21780326 4 - TSS region transcription start site region 140439
Tssr140440 16 21787796 to 21787813 17 - TSS region transcription start site region 140440
Cpgi8099 16 21787828 to 21787994 166 CpG island CpG island 8099
Cpgi8100 16 21794016 to 21794845 829 CpG island CpG island 8100
Tssr137519 16 21794320 to 21794381 61 + TSS region transcription start site region 137519
1300002E11Rik 16 21794347 to 21809040 14693 + lincRNA gene RIKEN cDNA 1300002E11 gene
Tssr137520 16 21794384 to 21794391 7 + TSS region transcription start site region 137520
Map3k13 16 21825170 to 21933439 108269 + protein coding gene mitogen-activated protein kinase kinase kinase 13
Tssr137521 16 21826017 to 21826045 28 + TSS region transcription start site region 137521
D16Mit1 16 21827564 to 21827664 100 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1
Mopkd2 16 21827564 to 21827664 100 QTL modifier of polycystic kidney disease progression 2
Loh2 16 21827564 to 51386028 29558464 heritable phenotypic marker loss of heterozygosity, region 2
Gm49607 16 21833850 to 21836555 2705 - lincRNA gene predicted gene, 49607
Tssr137522 16 21835970 to 21835973 3 + TSS region transcription start site region 137522
Gm5962 16 21841050 to 21841544 494 - pseudogene predicted gene 5962
Gm26744 16 21843451 to 21845776 2325 - lincRNA gene predicted gene, 26744
Tssr137523 16 21855110 to 21855126 16 + TSS region transcription start site region 137523
Tssr137524 16 21855127 to 21855142 15 + TSS region transcription start site region 137524
Tssr137525 16 21855145 to 21855166 21 + TSS region transcription start site region 137525
Tssr137526 16 21867972 to 21867981 9 + TSS region transcription start site region 137526
Tssr137527 16 21896462 to 21896475 13 + TSS region transcription start site region 137527
Gm6467 16 21896506 to 21897116 610 + pseudogene predicted gene 6467
2610020F03Rik 16 21907922 to 21908777 855 - lincRNA gene RIKEN cDNA 2610020F03 gene
Tssr137528 16 21931056 to 21931059 3 + TSS region transcription start site region 137528
Tmem41a 16 21934327 to 21947552 13225 - protein coding gene transmembrane protein 41a
Cpgi8101 16 21946814 to 21947943 1129 CpG island CpG island 8101
Tssr140441 16 21947453 to 21947517 64 - TSS region transcription start site region 140441
Tssr140442 16 21947536 to 21947577 41 - TSS region transcription start site region 140442
Liph 16 21953817 to 21995658 41841 - protein coding gene lipase, member H
Cpgi8102 16 21976100 to 21976436 336 CpG island CpG island 8102
D16Mit35 16 21977849 to 21977997 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 35
Tssr137529 16 21982353 to 21982363 10 + TSS region transcription start site region 137529
Tssr140443 16 21984310 to 21984335 25 - TSS region transcription start site region 140443
Cpgi8103 16 21995322 to 21995536 214 CpG island CpG island 8103
Tssr140444 16 21995389 to 21995392 3 - TSS region transcription start site region 140444
Tssr140445 16 21995455 to 21995472 17 - TSS region transcription start site region 140445
Tssr140446 16 21995478 to 21995517 39 - TSS region transcription start site region 140446
Tssr140447 16 21995539 to 21995548 9 - TSS region transcription start site region 140447
Cpgi8104 16 22009043 to 22010146 1103 CpG island CpG island 8104
Tssr137530 16 22009450 to 22009466 16 + TSS region transcription start site region 137530
Tssr137531 16 22009471 to 22009543 72 + TSS region transcription start site region 137531
Senp2 16 22009484 to 22049269 39785 + protein coding gene SUMO/sentrin specific peptidase 2
Tssr137532 16 22009766 to 22009825 59 + TSS region transcription start site region 137532
Tssr137533 16 22023801 to 22023816 15 + TSS region transcription start site region 137533
Tssr137534 16 22047592 to 22047599 7 + TSS region transcription start site region 137534
Cpgi8105 16 22053439 to 22053711 272 CpG island CpG island 8105
Ndufa11b 16 22053510 to 22053933 423 + pseudogene NADH:ubiquinone oxidoreductase subunit A11B
Tssr137535 16 22053664 to 22053702 38 + TSS region transcription start site region 137535
Tssr137536 16 22059007 to 22059016 9 + TSS region transcription start site region 137536
Igf2bp2 16 22059009 to 22163299 104290 - protein coding gene insulin-like growth factor 2 mRNA binding protein 2
Tssr140448 16 22059860 to 22059877 17 - TSS region transcription start site region 140448
Tssr140449 16 22060036 to 22060076 40 - TSS region transcription start site region 140449
Tssr140450 16 22060142 to 22060155 13 - TSS region transcription start site region 140450
Tssr140451 16 22069257 to 22069260 3 - TSS region transcription start site region 140451
Tssr140452 16 22076105 to 22076126 21 - TSS region transcription start site region 140452
Tssr137537 16 22096001 to 22096012 11 + TSS region transcription start site region 137537
Tssr137538 16 22096023 to 22096069 46 + TSS region transcription start site region 137538
Cpgi8106 16 22119493 to 22119829 336 CpG island CpG island 8106
Tssr137539 16 22119809 to 22119822 13 + TSS region transcription start site region 137539
Tssr140453 16 22121268 to 22121285 17 - TSS region transcription start site region 140453
Tssr140454 16 22121302 to 22121332 30 - TSS region transcription start site region 140454
Cpgi8107 16 22161361 to 22164005 2644 CpG island CpG island 8107
Tssr140455 16 22162939 to 22163056 117 - TSS region transcription start site region 140455
Tssr140456 16 22163721 to 22163749 28 - TSS region transcription start site region 140456
Gm25810 16 22224244 to 22224351 107 + snRNA gene predicted gene, 25810
Tssr137540 16 22230334 to 22230384 50 + TSS region transcription start site region 137540
Gm5809 16 22230391 to 22230918 527 + pseudogene predicted pseudogene 5809
Gm26980 16 22236921 to 22237315 394 + pseudogene predicted gene, 26980
Gm36796 16 22244168 to 22244472 304 + pseudogene predicted gene, 36796
Tra2b 16 22245741 to 22266000 20259 - protein coding gene transformer 2 beta
Tssr140457 16 22246872 to 22246875 3 - TSS region transcription start site region 140457
Tssr140458 16 22251820 to 22251831 11 - TSS region transcription start site region 140458
Tssr140459 16 22252383 to 22252387 4 - TSS region transcription start site region 140459
Tssr140460 16 22257826 to 22257833 7 - TSS region transcription start site region 140460