Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:21212502-21578501

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ephb3 16 21204795 to 21223309 18514 + protein coding gene Eph receptor B3
Cpgi8090 16 21214285 to 21215083 798 CpG island CpG island 8090
Gm49750 16 21238495 to 21263159 24664 + lincRNA gene predicted gene, 49750
Cpgi8091 16 21246176 to 21247023 847 CpG island CpG island 8091
Gm16863 16 21247499 to 21296872 49373 - lincRNA gene predicted gene, 16863
Cpgi8092 16 21248173 to 21249023 850 CpG island CpG island 8092
Mir7680 16 21256013 to 21256066 53 - miRNA gene microRNA 7680
Tssr137509 16 21299896 to 21299901 5 + TSS region transcription start site region 137509
Cpgi8093 16 21310727 to 21311207 480 CpG island CpG island 8093
Magef1 16 21331902 to 21333356 1454 - pseudogene melanoma antigen family F, 1
Cpgi8094 16 21332949 to 21333580 631 CpG island CpG island 8094
Tssr140413 16 21333258 to 21333293 35 - TSS region transcription start site region 140413
Tssr140414 16 21333295 to 21333367 72 - TSS region transcription start site region 140414
Tssr137510 16 21333363 to 21333377 14 + TSS region transcription start site region 137510
Cpgi8095 16 21333781 to 21333965 184 CpG island CpG island 8095
Tssr137511 16 21339955 to 21339959 4 + TSS region transcription start site region 137511
Tssr140415 16 21369733 to 21369763 30 - TSS region transcription start site region 140415
Opfdc3 16 21372939 to 21372939 0 QTL open field distance from center 3
Gm36224 16 21389431 to 21394000 4569 + lncRNA gene predicted gene, 36224
Gm36150 16 21392502 to 21398501 5999 - lncRNA gene predicted gene, 36150
Cpgi8096 16 21422877 to 21423720 843 CpG island CpG island 8096
Vps8 16 21423118 to 21644680 221562 + protein coding gene VPS8 CORVET complex subunit
Tssr137512 16 21423145 to 21423214 69 + TSS region transcription start site region 137512
Tssr137513 16 21527458 to 21527471 13 + TSS region transcription start site region 137513
D16Mit208 16 21530487 to 21530596 109 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 208
Tssr137514 16 21558590 to 21558608 18 + TSS region transcription start site region 137514
Tssr137515 16 21558639 to 21558645 6 + TSS region transcription start site region 137515
Tssr137516 16 21568362 to 21568403 41 + TSS region transcription start site region 137516