Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:20799795-21628309

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4833419O12Rik 16 20800292 to 20803385 3093 - lincRNA gene RIKEN cDNA 4833419O12 gene
Tssr140406 16 20803257 to 20803260 3 - TSS region transcription start site region 140406
Tssr140407 16 20803350 to 20803361 11 - TSS region transcription start site region 140407
Tssr137502 16 20812335 to 20812337 2 + TSS region transcription start site region 137502
Gm9536 16 20820381 to 20820703 322 + pseudogene predicted gene 9536
Rps10-ps2 16 20822145 to 20822640 495 - pseudogene ribosomal protein S10, pseudogene 2
Tssr140408 16 20822676 to 20822680 4 - TSS region transcription start site region 140408
Tssr140409 16 20822887 to 20822893 6 - TSS region transcription start site region 140409
Tssr137503 16 20837138 to 20837148 10 + TSS region transcription start site region 137503
Tssr137504 16 20837152 to 20837168 16 + TSS region transcription start site region 137504
Tssr4813 16 20841639 to 20841643 4 + TSS region transcription start site region 4813
Tssr137505 16 20867006 to 20867014 8 + TSS region transcription start site region 137505
Gm49742 16 20875257 to 20893559 18302 - lincRNA gene predicted gene, 49742
Tssr4814 16 20928882 to 20928896 14 + TSS region transcription start site region 4814
Gm6551 16 20928969 to 20929853 884 + protein coding gene predicted gene 6551
Gm35913 16 20933721 to 20935422 1701 - lncRNA gene predicted gene, 35913
Gm18769 16 20960627 to 20961142 515 - pseudogene predicted gene, 18769
Gm18770 16 21021328 to 21021842 514 + pseudogene predicted gene, 18770
Gm6557 16 21062213 to 21063094 881 - protein coding gene predicted gene 6557
Tssr140410 16 21063123 to 21063139 16 - TSS region transcription start site region 140410
Tssr140411 16 21063141 to 21063157 16 - TSS region transcription start site region 140411
Tssr140412 16 21063159 to 21063204 45 - TSS region transcription start site region 140412
Gm9697 16 21079670 to 21080666 996 + pseudogene predicted gene 9697
Gm18771 16 21121848 to 21122525 677 + pseudogene predicted gene, 18771
Teddm3 16 21152659 to 21153944 1285 - protein coding gene transmembrane epididymal family member 3
Cpgi8088 16 21204421 to 21205655 1234 CpG island CpG island 8088
Tssr137506 16 21204748 to 21204753 5 + TSS region transcription start site region 137506
Tssr137507 16 21204771 to 21204787 16 + TSS region transcription start site region 137507
Ephb3 16 21204795 to 21223309 18514 + protein coding gene Eph receptor B3
Tssr137508 16 21205043 to 21205065 22 + TSS region transcription start site region 137508
Cpgi8089 16 21210977 to 21211410 433 CpG island CpG island 8089
Cpgi8090 16 21214285 to 21215083 798 CpG island CpG island 8090
Gm49750 16 21238495 to 21263159 24664 + lincRNA gene predicted gene, 49750
Cpgi8091 16 21246176 to 21247023 847 CpG island CpG island 8091
Gm16863 16 21247499 to 21296872 49373 - lincRNA gene predicted gene, 16863
Cpgi8092 16 21248173 to 21249023 850 CpG island CpG island 8092
Mir7680 16 21256013 to 21256066 53 - miRNA gene microRNA 7680
Tssr137509 16 21299896 to 21299901 5 + TSS region transcription start site region 137509
Cpgi8093 16 21310727 to 21311207 480 CpG island CpG island 8093
Magef1 16 21331902 to 21333356 1454 - pseudogene melanoma antigen family F, 1
Cpgi8094 16 21332949 to 21333580 631 CpG island CpG island 8094
Tssr140413 16 21333258 to 21333293 35 - TSS region transcription start site region 140413
Tssr140414 16 21333295 to 21333367 72 - TSS region transcription start site region 140414
Tssr137510 16 21333363 to 21333377 14 + TSS region transcription start site region 137510
Cpgi8095 16 21333781 to 21333965 184 CpG island CpG island 8095
Tssr137511 16 21339955 to 21339959 4 + TSS region transcription start site region 137511
Tssr140415 16 21369733 to 21369763 30 - TSS region transcription start site region 140415
Opfdc3 16 21372939 to 21372939 0 QTL open field distance from center 3
Gm36224 16 21389431 to 21394000 4569 + lncRNA gene predicted gene, 36224
Gm36150 16 21392502 to 21398501 5999 - lncRNA gene predicted gene, 36150
Cpgi8096 16 21422877 to 21423720 843 CpG island CpG island 8096
Vps8 16 21423118 to 21644680 221562 + protein coding gene VPS8 CORVET complex subunit
Tssr137512 16 21423145 to 21423214 69 + TSS region transcription start site region 137512
Tssr137513 16 21527458 to 21527471 13 + TSS region transcription start site region 137513
D16Mit208 16 21530487 to 21530596 109 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 208
Tssr137514 16 21558590 to 21558608 18 + TSS region transcription start site region 137514
Tssr137515 16 21558639 to 21558645 6 + TSS region transcription start site region 137515
Tssr137516 16 21568362 to 21568403 41 + TSS region transcription start site region 137516