Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:20675127-23035142

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434 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif4g1 16 20672720 to 20692883 20163 + protein coding gene eukaryotic translation initiation factor 4, gamma 1
Tssr137474 16 20675357 to 20675376 19 + TSS region transcription start site region 137474
Tssr137475 16 20675389 to 20675430 41 + TSS region transcription start site region 137475
Tssr137476 16 20675726 to 20675739 13 + TSS region transcription start site region 137476
Tssr137477 16 20677614 to 20677634 20 + TSS region transcription start site region 137477
Tssr137478 16 20677653 to 20677672 19 + TSS region transcription start site region 137478
Tssr137479 16 20678210 to 20678256 46 + TSS region transcription start site region 137479
Tssr137480 16 20678405 to 20678434 29 + TSS region transcription start site region 137480
Tssr137481 16 20678436 to 20678451 15 + TSS region transcription start site region 137481
Tssr137482 16 20678637 to 20678648 11 + TSS region transcription start site region 137482
Tssr137483 16 20679636 to 20679678 42 + TSS region transcription start site region 137483
Tssr137484 16 20681763 to 20681784 21 + TSS region transcription start site region 137484
Tssr137485 16 20684240 to 20684242 2 + TSS region transcription start site region 137485
Snord66 16 20684256 to 20684313 57 + snoRNA gene small nucleolar RNA, C/D box 66
Tssr137486 16 20691805 to 20691810 5 + TSS region transcription start site region 137486
Cpgi8083 16 20693100 to 20693756 656 CpG island CpG island 8083
Fam131a 16 20693241 to 20703048 9807 + protein coding gene family with sequence similarity 131, member A
Tssr137487 16 20693263 to 20693322 59 + TSS region transcription start site region 137487
Tssr137488 16 20693327 to 20693347 20 + TSS region transcription start site region 137488
Tssr137489 16 20695000 to 20695009 9 + TSS region transcription start site region 137489
Tssr137490 16 20695017 to 20695029 12 + TSS region transcription start site region 137490
Tssr137491 16 20695041 to 20695091 50 + TSS region transcription start site region 137491
Cpgi8084 16 20695655 to 20696339 684 CpG island CpG island 8084
Tssr137492 16 20696179 to 20696211 32 + TSS region transcription start site region 137492
Tssr140399 16 20701856 to 20701867 11 - TSS region transcription start site region 140399
Clcn2 16 20702964 to 20717746 14782 - protein coding gene chloride channel, voltage-sensitive 2
Cpgi8085 16 20715634 to 20716721 1087 CpG island CpG island 8085
Tssr140400 16 20716101 to 20716122 21 - TSS region transcription start site region 140400
Tssr4812 16 20716139 to 20716147 8 - TSS region transcription start site region 4812
Tssr140401 16 20716159 to 20716166 7 - TSS region transcription start site region 140401
Tssr137493 16 20716815 to 20716835 20 + TSS region transcription start site region 137493
Cpgi8086 16 20716859 to 20718075 1216 CpG island CpG island 8086
Tssr140402 16 20717224 to 20717236 12 - TSS region transcription start site region 140402
Tssr140403 16 20717722 to 20717751 29 - TSS region transcription start site region 140403
Tssr137494 16 20717754 to 20717784 30 + TSS region transcription start site region 137494
Tssr137495 16 20717795 to 20717817 22 + TSS region transcription start site region 137495
Tssr137496 16 20717820 to 20717851 31 + TSS region transcription start site region 137496
Polr2h 16 20717826 to 20722272 4446 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide H
Tssr137497 16 20717860 to 20717880 20 + TSS region transcription start site region 137497
Tssr137498 16 20718107 to 20718151 44 + TSS region transcription start site region 137498
Thpo 16 20724454 to 20734511 10057 - protein coding gene thrombopoietin
Tssr140404 16 20730544 to 20730592 48 - TSS region transcription start site region 140404
Cpgi8087 16 20731736 to 20734630 2894 CpG island CpG island 8087
Tssr137499 16 20732760 to 20732806 46 + TSS region transcription start site region 137499
Tssr137500 16 20732897 to 20732941 44 + TSS region transcription start site region 137500
Tssr137501 16 20733104 to 20733158 54 + TSS region transcription start site region 137501
Chrd 16 20733127 to 20742384 9257 + protein coding gene chordin
Gm22741 16 20745308 to 20745472 164 + snRNA gene predicted gene, 22741
Tssr140405 16 20784736 to 20784739 3 - TSS region transcription start site region 140405
Gm46544 16 20797227 to 20797773 546 - pseudogene predicted gene, 46544
4833419O12Rik 16 20800292 to 20803385 3093 - lincRNA gene RIKEN cDNA 4833419O12 gene
Tssr140406 16 20803257 to 20803260 3 - TSS region transcription start site region 140406
Tssr140407 16 20803350 to 20803361 11 - TSS region transcription start site region 140407
Tssr137502 16 20812335 to 20812337 2 + TSS region transcription start site region 137502
Gm9536 16 20820381 to 20820703 322 + pseudogene predicted gene 9536
Rps10-ps2 16 20822145 to 20822640 495 - pseudogene ribosomal protein S10, pseudogene 2
Tssr140408 16 20822676 to 20822680 4 - TSS region transcription start site region 140408
Tssr140409 16 20822887 to 20822893 6 - TSS region transcription start site region 140409
Tssr137503 16 20837138 to 20837148 10 + TSS region transcription start site region 137503
Tssr137504 16 20837152 to 20837168 16 + TSS region transcription start site region 137504
Tssr4813 16 20841639 to 20841643 4 + TSS region transcription start site region 4813
Tssr137505 16 20867006 to 20867014 8 + TSS region transcription start site region 137505
Gm49742 16 20875257 to 20893559 18302 - lincRNA gene predicted gene, 49742
Tssr4814 16 20928882 to 20928896 14 + TSS region transcription start site region 4814
Gm6551 16 20928969 to 20929853 884 + protein coding gene predicted gene 6551
Gm35913 16 20933721 to 20935422 1701 - lncRNA gene predicted gene, 35913
Gm18769 16 20960627 to 20961142 515 - pseudogene predicted gene, 18769
Gm18770 16 21021328 to 21021842 514 + pseudogene predicted gene, 18770
Gm6557 16 21062213 to 21063094 881 - protein coding gene predicted gene 6557
Tssr140410 16 21063123 to 21063139 16 - TSS region transcription start site region 140410
Tssr140411 16 21063141 to 21063157 16 - TSS region transcription start site region 140411
Tssr140412 16 21063159 to 21063204 45 - TSS region transcription start site region 140412
Gm9697 16 21079670 to 21080666 996 + pseudogene predicted gene 9697
Gm18771 16 21121848 to 21122525 677 + pseudogene predicted gene, 18771
Teddm3 16 21152659 to 21153944 1285 - protein coding gene transmembrane epididymal family member 3
Cpgi8088 16 21204421 to 21205655 1234 CpG island CpG island 8088
Tssr137506 16 21204748 to 21204753 5 + TSS region transcription start site region 137506
Tssr137507 16 21204771 to 21204787 16 + TSS region transcription start site region 137507
Ephb3 16 21204795 to 21223309 18514 + protein coding gene Eph receptor B3
Tssr137508 16 21205043 to 21205065 22 + TSS region transcription start site region 137508
Cpgi8089 16 21210977 to 21211410 433 CpG island CpG island 8089
Cpgi8090 16 21214285 to 21215083 798 CpG island CpG island 8090
Gm49750 16 21238495 to 21263159 24664 + lincRNA gene predicted gene, 49750
Cpgi8091 16 21246176 to 21247023 847 CpG island CpG island 8091
Gm16863 16 21247499 to 21296872 49373 - lincRNA gene predicted gene, 16863
Cpgi8092 16 21248173 to 21249023 850 CpG island CpG island 8092
Mir7680 16 21256013 to 21256066 53 - miRNA gene microRNA 7680
Tssr137509 16 21299896 to 21299901 5 + TSS region transcription start site region 137509
Cpgi8093 16 21310727 to 21311207 480 CpG island CpG island 8093
Magef1 16 21331902 to 21333356 1454 - pseudogene melanoma antigen family F, 1
Cpgi8094 16 21332949 to 21333580 631 CpG island CpG island 8094
Tssr140413 16 21333258 to 21333293 35 - TSS region transcription start site region 140413
Tssr140414 16 21333295 to 21333367 72 - TSS region transcription start site region 140414
Tssr137510 16 21333363 to 21333377 14 + TSS region transcription start site region 137510
Cpgi8095 16 21333781 to 21333965 184 CpG island CpG island 8095
Tssr137511 16 21339955 to 21339959 4 + TSS region transcription start site region 137511
Tssr140415 16 21369733 to 21369763 30 - TSS region transcription start site region 140415
Opfdc3 16 21372939 to 21372939 0 QTL open field distance from center 3
Gm36224 16 21389431 to 21394000 4569 + lncRNA gene predicted gene, 36224
Gm36150 16 21392502 to 21398501 5999 - lncRNA gene predicted gene, 36150
Cpgi8096 16 21422877 to 21423720 843 CpG island CpG island 8096
Vps8 16 21423118 to 21644680 221562 + protein coding gene VPS8 CORVET complex subunit
Tssr137512 16 21423145 to 21423214 69 + TSS region transcription start site region 137512
Tssr137513 16 21527458 to 21527471 13 + TSS region transcription start site region 137513
D16Mit208 16 21530487 to 21530596 109 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 208
Tssr137514 16 21558590 to 21558608 18 + TSS region transcription start site region 137514
Tssr137515 16 21558639 to 21558645 6 + TSS region transcription start site region 137515
Tssr137516 16 21568362 to 21568403 41 + TSS region transcription start site region 137516
2510009E07Rik 16 21649045 to 21694665 45620 - protein coding gene RIKEN cDNA 2510009E07 gene
Tssr140416 16 21650036 to 21650043 7 - TSS region transcription start site region 140416
Tssr140417 16 21650077 to 21650088 11 - TSS region transcription start site region 140417
Tssr140418 16 21650107 to 21650108 1 - TSS region transcription start site region 140418
Tssr140419 16 21650111 to 21650123 12 - TSS region transcription start site region 140419
Tssr140420 16 21650155 to 21650163 8 - TSS region transcription start site region 140420
Tssr140421 16 21650165 to 21650177 12 - TSS region transcription start site region 140421
Tssr140422 16 21650201 to 21650213 12 - TSS region transcription start site region 140422
Tssr140423 16 21650366 to 21650380 14 - TSS region transcription start site region 140423
Tssr140424 16 21650385 to 21650407 22 - TSS region transcription start site region 140424
Tssr140425 16 21651031 to 21651051 20 - TSS region transcription start site region 140425
Cpgi8097 16 21653270 to 21653588 318 CpG island CpG island 8097
Tssr140426 16 21668291 to 21668324 33 - TSS region transcription start site region 140426
Tssr140427 16 21668341 to 21668358 17 - TSS region transcription start site region 140427
Tssr137517 16 21693023 to 21693035 12 + TSS region transcription start site region 137517
Tssr137518 16 21693050 to 21693067 17 + TSS region transcription start site region 137518
Cpgi8098 16 21693948 to 21695567 1619 CpG island CpG island 8098
Tssr140428 16 21694570 to 21694601 31 - TSS region transcription start site region 140428
Tssr4815 16 21697370 to 21697373 3 + TSS region transcription start site region 4815
Tssr140429 16 21743061 to 21743066 5 - TSS region transcription start site region 140429
Ehhadh 16 21761287 to 21787807 26520 - protein coding gene enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
Tssr140430 16 21761871 to 21761876 5 - TSS region transcription start site region 140430
Tssr140431 16 21762186 to 21762205 19 - TSS region transcription start site region 140431
Tssr140432 16 21762579 to 21762586 7 - TSS region transcription start site region 140432
Tssr140433 16 21762606 to 21762613 7 - TSS region transcription start site region 140433
Tssr140434 16 21762895 to 21762905 10 - TSS region transcription start site region 140434
Tssr140435 16 21762907 to 21762911 4 - TSS region transcription start site region 140435
Tssr140436 16 21762981 to 21763015 34 - TSS region transcription start site region 140436
Tssr140437 16 21766547 to 21766574 27 - TSS region transcription start site region 140437
Gm24898 16 21774113 to 21774218 105 + snRNA gene predicted gene, 24898
Tssr140438 16 21775489 to 21775495 6 - TSS region transcription start site region 140438
Tssr140439 16 21780322 to 21780326 4 - TSS region transcription start site region 140439
Tssr140440 16 21787796 to 21787813 17 - TSS region transcription start site region 140440
Cpgi8099 16 21787828 to 21787994 166 CpG island CpG island 8099
Cpgi8100 16 21794016 to 21794845 829 CpG island CpG island 8100
Tssr137519 16 21794320 to 21794381 61 + TSS region transcription start site region 137519
1300002E11Rik 16 21794347 to 21809040 14693 + lincRNA gene RIKEN cDNA 1300002E11 gene
Tssr137520 16 21794384 to 21794391 7 + TSS region transcription start site region 137520
Map3k13 16 21825170 to 21933439 108269 + protein coding gene mitogen-activated protein kinase kinase kinase 13
Tssr137521 16 21826017 to 21826045 28 + TSS region transcription start site region 137521
Loh2 16 21827564 to 51386028 29558464 heritable phenotypic marker loss of heterozygosity, region 2
Mopkd2 16 21827564 to 21827664 100 QTL modifier of polycystic kidney disease progression 2
D16Mit1 16 21827564 to 21827664 100 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1
Gm49607 16 21833850 to 21836555 2705 - lincRNA gene predicted gene, 49607
Tssr137522 16 21835970 to 21835973 3 + TSS region transcription start site region 137522
Gm5962 16 21841050 to 21841544 494 - pseudogene predicted gene 5962
Gm26744 16 21843451 to 21845776 2325 - lincRNA gene predicted gene, 26744
Tssr137523 16 21855110 to 21855126 16 + TSS region transcription start site region 137523
Tssr137524 16 21855127 to 21855142 15 + TSS region transcription start site region 137524
Tssr137525 16 21855145 to 21855166 21 + TSS region transcription start site region 137525
Tssr137526 16 21867972 to 21867981 9 + TSS region transcription start site region 137526
Tssr137527 16 21896462 to 21896475 13 + TSS region transcription start site region 137527
Gm6467 16 21896506 to 21897116 610 + pseudogene predicted gene 6467
2610020F03Rik 16 21907922 to 21908777 855 - lincRNA gene RIKEN cDNA 2610020F03 gene
Tssr137528 16 21931056 to 21931059 3 + TSS region transcription start site region 137528
Tmem41a 16 21934327 to 21947552 13225 - protein coding gene transmembrane protein 41a
Cpgi8101 16 21946814 to 21947943 1129 CpG island CpG island 8101
Tssr140441 16 21947453 to 21947517 64 - TSS region transcription start site region 140441
Tssr140442 16 21947536 to 21947577 41 - TSS region transcription start site region 140442
Liph 16 21953817 to 21995658 41841 - protein coding gene lipase, member H
Cpgi8102 16 21976100 to 21976436 336 CpG island CpG island 8102
D16Mit35 16 21977849 to 21977997 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 35
Tssr137529 16 21982353 to 21982363 10 + TSS region transcription start site region 137529
Tssr140443 16 21984310 to 21984335 25 - TSS region transcription start site region 140443
Cpgi8103 16 21995322 to 21995536 214 CpG island CpG island 8103
Tssr140444 16 21995389 to 21995392 3 - TSS region transcription start site region 140444
Tssr140445 16 21995455 to 21995472 17 - TSS region transcription start site region 140445
Tssr140446 16 21995478 to 21995517 39 - TSS region transcription start site region 140446
Tssr140447 16 21995539 to 21995548 9 - TSS region transcription start site region 140447
Cpgi8104 16 22009043 to 22010146 1103 CpG island CpG island 8104
Tssr137530 16 22009450 to 22009466 16 + TSS region transcription start site region 137530
Tssr137531 16 22009471 to 22009543 72 + TSS region transcription start site region 137531
Senp2 16 22009484 to 22049269 39785 + protein coding gene SUMO/sentrin specific peptidase 2
Tssr137532 16 22009766 to 22009825 59 + TSS region transcription start site region 137532
Tssr137533 16 22023801 to 22023816 15 + TSS region transcription start site region 137533
Tssr137534 16 22047592 to 22047599 7 + TSS region transcription start site region 137534
Cpgi8105 16 22053439 to 22053711 272 CpG island CpG island 8105
Ndufa11b 16 22053510 to 22053933 423 + pseudogene NADH:ubiquinone oxidoreductase subunit A11B
Tssr137535 16 22053664 to 22053702 38 + TSS region transcription start site region 137535
Tssr137536 16 22059007 to 22059016 9 + TSS region transcription start site region 137536
Igf2bp2 16 22059009 to 22163299 104290 - protein coding gene insulin-like growth factor 2 mRNA binding protein 2
Tssr140448 16 22059860 to 22059877 17 - TSS region transcription start site region 140448
Tssr140449 16 22060036 to 22060076 40 - TSS region transcription start site region 140449
Tssr140450 16 22060142 to 22060155 13 - TSS region transcription start site region 140450
Tssr140451 16 22069257 to 22069260 3 - TSS region transcription start site region 140451
Tssr140452 16 22076105 to 22076126 21 - TSS region transcription start site region 140452
Tssr137537 16 22096001 to 22096012 11 + TSS region transcription start site region 137537
Tssr137538 16 22096023 to 22096069 46 + TSS region transcription start site region 137538
Cpgi8106 16 22119493 to 22119829 336 CpG island CpG island 8106
Tssr137539 16 22119809 to 22119822 13 + TSS region transcription start site region 137539
Tssr140453 16 22121268 to 22121285 17 - TSS region transcription start site region 140453
Tssr140454 16 22121302 to 22121332 30 - TSS region transcription start site region 140454