Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:20567213-21558094

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49745 16 20566358 to 20568508 2150 + lincRNA gene predicted gene, 49745
Gm49746 16 20571410 to 20571682 272 + pseudogene predicted gene, 49746
Gm20164 16 20583109 to 20583424 315 + pseudogene predicted gene, 20164
Gm35685 16 20587930 to 20589971 2041 - lncRNA gene predicted gene, 35685
Vwa5b2 16 20589471 to 20605377 15906 + protein coding gene von Willebrand factor A domain containing 5B2
Cpgi8076 16 20589507 to 20591955 2448 CpG island CpG island 8076
Tssr140389 16 20589984 to 20590042 58 - TSS region transcription start site region 140389
Tssr4811 16 20590088 to 20590115 27 + TSS region transcription start site region 4811
Gm49748 16 20590117 to 20590684 567 - antisense lncRNA gene predicted gene, 49748
Tssr137453 16 20590146 to 20590174 28 + TSS region transcription start site region 137453
Mir1224 16 20604452 to 20604536 84 + miRNA gene microRNA 1224
Alg3 16 20605374 to 20611735 6361 - protein coding gene asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
Tssr137454 16 20609989 to 20610009 20 + TSS region transcription start site region 137454
Cpgi8077 16 20610504 to 20610845 341 CpG island CpG island 8077
Tssr140390 16 20610741 to 20610757 16 - TSS region transcription start site region 140390
Cpgi8078 16 20611337 to 20612089 752 CpG island CpG island 8078
Tssr137455 16 20611585 to 20611635 50 + TSS region transcription start site region 137455
Eef1akmt4 16 20611593 to 20619011 7418 + protein coding gene EEF1A lysine methyltransferase 4
Gm49333 16 20611610 to 20645920 34310 + protein coding gene predicted gene, 49333
Tssr137456 16 20611675 to 20611686 11 + TSS region transcription start site region 137456
Camk2n2 16 20619215 to 20621278 2063 - protein coding gene calcium/calmodulin-dependent protein kinase II inhibitor 2
Cpgi8079 16 20619509 to 20622693 3184 CpG island CpG island 8079
Tssr140391 16 20619826 to 20619871 45 - TSS region transcription start site region 140391
Tssr140392 16 20621209 to 20621229 20 - TSS region transcription start site region 140392
Tssr140393 16 20621231 to 20621252 21 - TSS region transcription start site region 140393
Tssr140394 16 20621255 to 20621304 49 - TSS region transcription start site region 140394
Tssr140395 16 20621354 to 20621421 67 - TSS region transcription start site region 140395
Tssr140396 16 20621430 to 20621447 17 - TSS region transcription start site region 140396
Tssr140397 16 20621448 to 20621481 33 - TSS region transcription start site region 140397
Tssr140398 16 20622324 to 20622335 11 - TSS region transcription start site region 140398
Cpgi8080 16 20629669 to 20630376 707 CpG island CpG island 8080
Tssr137457 16 20629799 to 20629837 38 + TSS region transcription start site region 137457
Ece2 16 20629828 to 20646485 16657 + protein coding gene endothelin converting enzyme 2
Tssr137458 16 20629842 to 20629894 52 + TSS region transcription start site region 137458
Tssr137459 16 20629972 to 20629983 11 + TSS region transcription start site region 137459
Tssr137460 16 20629984 to 20630006 22 + TSS region transcription start site region 137460
Cpgi8081 16 20651343 to 20652090 747 CpG island CpG island 8081
Psmd2 16 20651652 to 20663414 11762 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
Tssr137461 16 20651664 to 20651712 48 + TSS region transcription start site region 137461
Tssr137462 16 20654436 to 20654440 4 + TSS region transcription start site region 137462
Tssr137463 16 20657909 to 20657927 18 + TSS region transcription start site region 137463
Gm4462 16 20663754 to 20665056 1302 + pseudogene predicted gene 4462
Cpgi8082 16 20672506 to 20673761 1255 CpG island CpG island 8082
Tssr137464 16 20672716 to 20672859 143 + TSS region transcription start site region 137464
Eif4g1 16 20672720 to 20692883 20163 + protein coding gene eukaryotic translation initiation factor 4, gamma 1
Tssr137465 16 20672887 to 20672892 5 + TSS region transcription start site region 137465
Tssr137466 16 20672907 to 20672918 11 + TSS region transcription start site region 137466
Tssr137467 16 20672921 to 20672942 21 + TSS region transcription start site region 137467
Tssr137468 16 20673096 to 20673117 21 + TSS region transcription start site region 137468
Tssr137469 16 20673195 to 20673245 50 + TSS region transcription start site region 137469
Tssr137470 16 20673264 to 20673362 98 + TSS region transcription start site region 137470
Tssr137471 16 20673534 to 20673607 73 + TSS region transcription start site region 137471
Tssr137472 16 20673865 to 20673887 22 + TSS region transcription start site region 137472
Tssr137473 16 20674254 to 20674274 20 + TSS region transcription start site region 137473
Tssr137474 16 20675357 to 20675376 19 + TSS region transcription start site region 137474
Tssr137475 16 20675389 to 20675430 41 + TSS region transcription start site region 137475
Tssr137476 16 20675726 to 20675739 13 + TSS region transcription start site region 137476
Tssr137477 16 20677614 to 20677634 20 + TSS region transcription start site region 137477
Tssr137478 16 20677653 to 20677672 19 + TSS region transcription start site region 137478
Tssr137479 16 20678210 to 20678256 46 + TSS region transcription start site region 137479
Tssr137480 16 20678405 to 20678434 29 + TSS region transcription start site region 137480
Tssr137481 16 20678436 to 20678451 15 + TSS region transcription start site region 137481
Tssr137482 16 20678637 to 20678648 11 + TSS region transcription start site region 137482
Tssr137483 16 20679636 to 20679678 42 + TSS region transcription start site region 137483
Tssr137484 16 20681763 to 20681784 21 + TSS region transcription start site region 137484
Tssr137485 16 20684240 to 20684242 2 + TSS region transcription start site region 137485
Snord66 16 20684256 to 20684313 57 + snoRNA gene small nucleolar RNA, C/D box 66
Tssr137486 16 20691805 to 20691810 5 + TSS region transcription start site region 137486
Cpgi8083 16 20693100 to 20693756 656 CpG island CpG island 8083
Fam131a 16 20693241 to 20703048 9807 + protein coding gene family with sequence similarity 131, member A
Tssr137487 16 20693263 to 20693322 59 + TSS region transcription start site region 137487
Tssr137488 16 20693327 to 20693347 20 + TSS region transcription start site region 137488
Tssr137489 16 20695000 to 20695009 9 + TSS region transcription start site region 137489
Tssr137490 16 20695017 to 20695029 12 + TSS region transcription start site region 137490
Tssr137491 16 20695041 to 20695091 50 + TSS region transcription start site region 137491
Cpgi8084 16 20695655 to 20696339 684 CpG island CpG island 8084
Tssr137492 16 20696179 to 20696211 32 + TSS region transcription start site region 137492
Tssr140399 16 20701856 to 20701867 11 - TSS region transcription start site region 140399
Clcn2 16 20702964 to 20717746 14782 - protein coding gene chloride channel, voltage-sensitive 2
Cpgi8085 16 20715634 to 20716721 1087 CpG island CpG island 8085
Tssr140400 16 20716101 to 20716122 21 - TSS region transcription start site region 140400
Tssr4812 16 20716139 to 20716147 8 - TSS region transcription start site region 4812
Tssr140401 16 20716159 to 20716166 7 - TSS region transcription start site region 140401
Tssr137493 16 20716815 to 20716835 20 + TSS region transcription start site region 137493
Cpgi8086 16 20716859 to 20718075 1216 CpG island CpG island 8086
Tssr140402 16 20717224 to 20717236 12 - TSS region transcription start site region 140402
Tssr140403 16 20717722 to 20717751 29 - TSS region transcription start site region 140403
Tssr137494 16 20717754 to 20717784 30 + TSS region transcription start site region 137494
Tssr137495 16 20717795 to 20717817 22 + TSS region transcription start site region 137495
Tssr137496 16 20717820 to 20717851 31 + TSS region transcription start site region 137496
Polr2h 16 20717826 to 20722272 4446 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide H
Tssr137497 16 20717860 to 20717880 20 + TSS region transcription start site region 137497
Tssr137498 16 20718107 to 20718151 44 + TSS region transcription start site region 137498
Thpo 16 20724454 to 20734511 10057 - protein coding gene thrombopoietin
Tssr140404 16 20730544 to 20730592 48 - TSS region transcription start site region 140404
Cpgi8087 16 20731736 to 20734630 2894 CpG island CpG island 8087
Tssr137499 16 20732760 to 20732806 46 + TSS region transcription start site region 137499
Tssr137500 16 20732897 to 20732941 44 + TSS region transcription start site region 137500
Tssr137501 16 20733104 to 20733158 54 + TSS region transcription start site region 137501
Chrd 16 20733127 to 20742384 9257 + protein coding gene chordin
Gm22741 16 20745308 to 20745472 164 + snRNA gene predicted gene, 22741
Tssr140405 16 20784736 to 20784739 3 - TSS region transcription start site region 140405
Gm46544 16 20797227 to 20797773 546 - pseudogene predicted gene, 46544
4833419O12Rik 16 20800292 to 20803385 3093 - lincRNA gene RIKEN cDNA 4833419O12 gene
Tssr140406 16 20803257 to 20803260 3 - TSS region transcription start site region 140406
Tssr140407 16 20803350 to 20803361 11 - TSS region transcription start site region 140407
Tssr137502 16 20812335 to 20812337 2 + TSS region transcription start site region 137502
Gm9536 16 20820381 to 20820703 322 + pseudogene predicted gene 9536
Rps10-ps2 16 20822145 to 20822640 495 - pseudogene ribosomal protein S10, pseudogene 2
Tssr140408 16 20822676 to 20822680 4 - TSS region transcription start site region 140408
Tssr140409 16 20822887 to 20822893 6 - TSS region transcription start site region 140409
Tssr137503 16 20837138 to 20837148 10 + TSS region transcription start site region 137503
Tssr137504 16 20837152 to 20837168 16 + TSS region transcription start site region 137504
Tssr4813 16 20841639 to 20841643 4 + TSS region transcription start site region 4813
Tssr137505 16 20867006 to 20867014 8 + TSS region transcription start site region 137505
Gm49742 16 20875257 to 20893559 18302 - lincRNA gene predicted gene, 49742
Tssr4814 16 20928882 to 20928896 14 + TSS region transcription start site region 4814
Gm6551 16 20928969 to 20929853 884 + protein coding gene predicted gene 6551
Gm35913 16 20933721 to 20935422 1701 - lncRNA gene predicted gene, 35913
Gm18769 16 20960627 to 20961142 515 - pseudogene predicted gene, 18769
Gm18770 16 21021328 to 21021842 514 + pseudogene predicted gene, 18770
Gm6557 16 21062213 to 21063094 881 - protein coding gene predicted gene 6557
Tssr140410 16 21063123 to 21063139 16 - TSS region transcription start site region 140410
Tssr140411 16 21063141 to 21063157 16 - TSS region transcription start site region 140411
Tssr140412 16 21063159 to 21063204 45 - TSS region transcription start site region 140412
Gm9697 16 21079670 to 21080666 996 + pseudogene predicted gene 9697
Gm18771 16 21121848 to 21122525 677 + pseudogene predicted gene, 18771
Teddm3 16 21152659 to 21153944 1285 - protein coding gene transmembrane epididymal family member 3
Cpgi8088 16 21204421 to 21205655 1234 CpG island CpG island 8088
Tssr137506 16 21204748 to 21204753 5 + TSS region transcription start site region 137506
Tssr137507 16 21204771 to 21204787 16 + TSS region transcription start site region 137507
Ephb3 16 21204795 to 21223309 18514 + protein coding gene Eph receptor B3
Tssr137508 16 21205043 to 21205065 22 + TSS region transcription start site region 137508
Cpgi8089 16 21210977 to 21211410 433 CpG island CpG island 8089
Cpgi8090 16 21214285 to 21215083 798 CpG island CpG island 8090
Gm49750 16 21238495 to 21263159 24664 + lincRNA gene predicted gene, 49750
Cpgi8091 16 21246176 to 21247023 847 CpG island CpG island 8091
Gm16863 16 21247499 to 21296872 49373 - lincRNA gene predicted gene, 16863
Cpgi8092 16 21248173 to 21249023 850 CpG island CpG island 8092
Mir7680 16 21256013 to 21256066 53 - miRNA gene microRNA 7680
Tssr137509 16 21299896 to 21299901 5 + TSS region transcription start site region 137509
Cpgi8093 16 21310727 to 21311207 480 CpG island CpG island 8093
Magef1 16 21331902 to 21333356 1454 - pseudogene melanoma antigen family F, 1
Cpgi8094 16 21332949 to 21333580 631 CpG island CpG island 8094
Tssr140413 16 21333258 to 21333293 35 - TSS region transcription start site region 140413
Tssr140414 16 21333295 to 21333367 72 - TSS region transcription start site region 140414
Tssr137510 16 21333363 to 21333377 14 + TSS region transcription start site region 137510
Cpgi8095 16 21333781 to 21333965 184 CpG island CpG island 8095
Tssr137511 16 21339955 to 21339959 4 + TSS region transcription start site region 137511
Tssr140415 16 21369733 to 21369763 30 - TSS region transcription start site region 140415
Opfdc3 16 21372939 to 21372939 0 QTL open field distance from center 3
Gm36224 16 21389431 to 21394000 4569 + lncRNA gene predicted gene, 36224
Gm36150 16 21392502 to 21398501 5999 - lncRNA gene predicted gene, 36150
Cpgi8096 16 21422877 to 21423720 843 CpG island CpG island 8096
Vps8 16 21423118 to 21644680 221562 + protein coding gene VPS8 CORVET complex subunit
Tssr137512 16 21423145 to 21423214 69 + TSS region transcription start site region 137512
Tssr137513 16 21527458 to 21527471 13 + TSS region transcription start site region 137513
D16Mit208 16 21530487 to 21530596 109 DNA segment DNA Segment, Chr 16 Massachusetts Institute of Technology 208