Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:19748809-20628811

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr140336 16 19758206 to 19758213 7 - TSS region transcription start site region 140336
Tssr137406 16 19760195 to 19760227 32 + TSS region transcription start site region 137406
Tssr137407 16 19760232 to 19760247 15 + TSS region transcription start site region 137407
B3gnt5 16 19760234 to 19772760 12526 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
Tssr137408 16 19760263 to 19760331 68 + TSS region transcription start site region 137408
Tssr137409 16 19760336 to 19760394 58 + TSS region transcription start site region 137409
Tssr137410 16 19760397 to 19760424 27 + TSS region transcription start site region 137410
Cpgi8065 16 19760593 to 19761486 893 CpG island CpG island 8065
Tssr137411 16 19760627 to 19760644 17 + TSS region transcription start site region 137411
Tssr137412 16 19760795 to 19760798 3 + TSS region transcription start site region 137412
Tssr137413 16 19760825 to 19760836 11 + TSS region transcription start site region 137413
Tssr137414 16 19760902 to 19760909 7 + TSS region transcription start site region 137414
Tssr137415 16 19761963 to 19761969 6 + TSS region transcription start site region 137415
Tssr137416 16 19765061 to 19765066 5 + TSS region transcription start site region 137416
Gm49597 16 19852455 to 19852767 312 - pseudogene predicted gene, 49597
Tssr140337 16 19873099 to 19873102 3 - TSS region transcription start site region 140337
A930003A15Rik 16 19876567 to 19884274 7707 - lincRNA gene RIKEN cDNA A930003A15 gene
Gm49598 16 19883504 to 19884284 780 + lincRNA gene predicted gene, 49598
Tssr140338 16 19883782 to 19883806 24 - TSS region transcription start site region 140338
Gm27883 16 19883799 to 19883900 101 - miRNA gene predicted gene, 27883
Tssr4807 16 19883824 to 19883831 7 - TSS region transcription start site region 4807
Tssr140339 16 19883861 to 19883872 11 - TSS region transcription start site region 140339
Tssr140340 16 19883873 to 19883915 42 - TSS region transcription start site region 140340
Tssr140341 16 19884231 to 19884252 21 - TSS region transcription start site region 140341
Tssr140342 16 19884267 to 19884285 18 - TSS region transcription start site region 140342
Tssr140343 16 19918288 to 19918293 5 - TSS region transcription start site region 140343
Klhl6 16 19946496 to 19983037 36541 - protein coding gene kelch-like 6
Tssr4808 16 19968176 to 19968181 5 - TSS region transcription start site region 4808
Tssr140344 16 19982959 to 19982964 5 - TSS region transcription start site region 140344
Tssr140345 16 19983005 to 19983029 24 - TSS region transcription start site region 140345
Tssr140346 16 19983031 to 19983037 6 - TSS region transcription start site region 140346
Tssr140347 16 19983052 to 19983067 15 - TSS region transcription start site region 140347
Tssr4809 16 19983112 to 19983117 5 - TSS region transcription start site region 4809
D16Mit144 16 20032633 to 20032782 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 144
Cpgi8066 16 20097404 to 20098447 1043 CpG island CpG island 8066
Klhl24 16 20097542 to 20129221 31679 + protein coding gene kelch-like 24
Tssr137417 16 20097555 to 20097596 41 + TSS region transcription start site region 137417
Tssr137418 16 20097603 to 20097615 12 + TSS region transcription start site region 137418
Tssr140348 16 20098080 to 20098101 21 - TSS region transcription start site region 140348
Tssr137419 16 20107537 to 20107560 23 + TSS region transcription start site region 137419
Tssr137420 16 20112504 to 20112517 13 + TSS region transcription start site region 137420
Tssr137421 16 20123602 to 20123606 4 + TSS region transcription start site region 137421
Tssr137422 16 20123821 to 20123838 17 + TSS region transcription start site region 137422
Cpgi8067 16 20140663 to 20141681 1018 CpG island CpG island 8067
Tssr137423 16 20141061 to 20141140 79 + TSS region transcription start site region 137423
Yeats2 16 20141063 to 20232573 91510 + protein coding gene YEATS domain containing 2
Tssr4810 16 20174731 to 20174753 22 + TSS region transcription start site region 4810
Gm10241 16 20176727 to 20177012 285 - pseudogene predicted pseudogene 10241
Tssr137424 16 20186510 to 20186519 9 + TSS region transcription start site region 137424
Tssr137425 16 20186544 to 20186549 5 + TSS region transcription start site region 137425
Tssr137426 16 20186572 to 20186577 5 + TSS region transcription start site region 137426
Tssr137427 16 20188791 to 20188802 11 + TSS region transcription start site region 137427
Tssr137428 16 20188809 to 20188811 2 + TSS region transcription start site region 137428
Tssr137429 16 20188822 to 20188831 9 + TSS region transcription start site region 137429
Bwtn1 16 20200579 to 85803938 65603359 QTL body weight at necropsy 1
D16Mit28 16 20200579 to 20200725 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 28
Map6d1 16 20233309 to 20241358 8049 - protein coding gene MAP6 domain containing 1
Gm41431 16 20236647 to 20237512 865 + lncRNA gene predicted gene, 41431
Cpgi8068 16 20240553 to 20241688 1135 CpG island CpG island 8068
Gm49566 16 20241027 to 20242114 1087 + antisense lncRNA gene predicted gene, 49566
Tssr140349 16 20241264 to 20241274 10 - TSS region transcription start site region 140349
Tssr140350 16 20241277 to 20241298 21 - TSS region transcription start site region 140350
Tssr140351 16 20241304 to 20241363 59 - TSS region transcription start site region 140351
Parl 16 20279818 to 20302387 22569 - protein coding gene presenilin associated, rhomboid-like
D16Ertd6e 16 20289236 to 20289435 199 DNA segment DNA segment, Chr 16, ERATO Doi 6, expressed
Tssr140352 16 20292132 to 20292143 11 - TSS region transcription start site region 140352
Tssr140353 16 20301787 to 20301808 21 - TSS region transcription start site region 140353
Tssr140354 16 20301811 to 20301820 9 - TSS region transcription start site region 140354
Cpgi8069 16 20301913 to 20302478 565 CpG island CpG island 8069
Tssr140355 16 20302324 to 20302345 21 - TSS region transcription start site region 140355
Tssr140356 16 20302358 to 20302401 43 - TSS region transcription start site region 140356
Cyp2ab1 16 20308387 to 20325404 17017 - protein coding gene cytochrome P450, family 2, subfamily ab, polypeptide 1
Tssr140357 16 20316802 to 20316805 3 - TSS region transcription start site region 140357
Abcc5 16 20331303 to 20426394 95091 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 5
Tssr140358 16 20338672 to 20338684 12 - TSS region transcription start site region 140358
Tssr140359 16 20354710 to 20354719 9 - TSS region transcription start site region 140359
Tssr140360 16 20356177 to 20356207 30 - TSS region transcription start site region 140360
Tssr140361 16 20356293 to 20356322 29 - TSS region transcription start site region 140361
Tssr140362 16 20362222 to 20362232 10 - TSS region transcription start site region 140362
Tssr140363 16 20362239 to 20362261 22 - TSS region transcription start site region 140363
Tssr140364 16 20364106 to 20364136 30 - TSS region transcription start site region 140364
Tssr140365 16 20364157 to 20364169 12 - TSS region transcription start site region 140365
Tssr140366 16 20372147 to 20372195 48 - TSS region transcription start site region 140366
Tssr140367 16 20401095 to 20401099 4 - TSS region transcription start site region 140367
Tssr140368 16 20401778 to 20401794 16 - TSS region transcription start site region 140368
Tssr140369 16 20402274 to 20402288 14 - TSS region transcription start site region 140369
Tssr140370 16 20403320 to 20403338 18 - TSS region transcription start site region 140370
Tssr140371 16 20405489 to 20405502 13 - TSS region transcription start site region 140371
Tssr140372 16 20405515 to 20405537 22 - TSS region transcription start site region 140372
Tssr140373 16 20405547 to 20405575 28 - TSS region transcription start site region 140373
Tssr140374 16 20405584 to 20405607 23 - TSS region transcription start site region 140374
Tssr140375 16 20405631 to 20405640 9 - TSS region transcription start site region 140375
Tssr140376 16 20405828 to 20405849 21 - TSS region transcription start site region 140376
Tssr140377 16 20412796 to 20412799 3 - TSS region transcription start site region 140377
Tssr137430 16 20421253 to 20421261 8 + TSS region transcription start site region 137430
Tssr140378 16 20423481 to 20423504 23 - TSS region transcription start site region 140378
Tssr140379 16 20424324 to 20424371 47 - TSS region transcription start site region 140379
Tssr137431 16 20424439 to 20424447 8 + TSS region transcription start site region 137431
Cpgi8070 16 20425824 to 20426703 879 CpG island CpG island 8070
Tssr140380 16 20425881 to 20425971 90 - TSS region transcription start site region 140380
Tssr140381 16 20426189 to 20426233 44 - TSS region transcription start site region 140381
Tssr140382 16 20426293 to 20426314 21 - TSS region transcription start site region 140382
Tssr140383 16 20426317 to 20426320 3 - TSS region transcription start site region 140383
Tssr140384 16 20426322 to 20426372 50 - TSS region transcription start site region 140384
Tssr140385 16 20426375 to 20426386 11 - TSS region transcription start site region 140385
Tssr140386 16 20426388 to 20426399 11 - TSS region transcription start site region 140386
Gm20614 16 20436038 to 20443382 7344 + pseudogene predicted gene 20614
Gm23332 16 20445653 to 20445927 274 + unclassified non-coding RNA gene predicted gene, 23332
D16Ertd778e 16 20451620 to 20451819 199 DNA segment DNA segment, Chr 16, ERATO Doi 778, expressed
Tssr140387 16 20454366 to 20454375 9 - TSS region transcription start site region 140387
Gm41432 16 20457538 to 20459284 1746 + lncRNA gene predicted gene, 41432
Gm20615 16 20488788 to 20491147 2359 + pseudogene predicted gene 20615
Cpgi8071 16 20498469 to 20499385 916 CpG island CpG island 8071
Tssr137432 16 20498793 to 20498804 11 + TSS region transcription start site region 137432
Eif2b5 16 20498817 to 20509323 10506 + protein coding gene eukaryotic translation initiation factor 2B, subunit 5 epsilon
Tssr137433 16 20498847 to 20498866 19 + TSS region transcription start site region 137433
Tssr137434 16 20498877 to 20498919 42 + TSS region transcription start site region 137434
Gm16618 16 20511133 to 20517766 6633 - antisense lncRNA gene predicted gene, 16618
Cpgi8072 16 20516425 to 20517572 1147 CpG island CpG island 8072
Tssr137435 16 20516885 to 20516896 11 + TSS region transcription start site region 137435
Tssr137436 16 20516962 to 20516999 37 + TSS region transcription start site region 137436
Dvl3 16 20516982 to 20534010 17028 + protein coding gene dishevelled segment polarity protein 3
Tssr137437 16 20517000 to 20517072 72 + TSS region transcription start site region 137437
Tssr137438 16 20517076 to 20517130 54 + TSS region transcription start site region 137438
Cpgi8073 16 20531154 to 20531313 159 CpG island CpG island 8073
Tssr137439 16 20531594 to 20531606 12 + TSS region transcription start site region 137439
Tssr137440 16 20531855 to 20531870 15 + TSS region transcription start site region 137440
Tssr137441 16 20532479 to 20532509 30 + TSS region transcription start site region 137441
Cpgi8074 16 20535242 to 20535998 756 CpG island CpG island 8074
Tssr137442 16 20535435 to 20535439 4 + TSS region transcription start site region 137442
Tssr137443 16 20535460 to 20535471 11 + TSS region transcription start site region 137443
Tssr137444 16 20535475 to 20535546 71 + TSS region transcription start site region 137444
Ap2m1 16 20535480 to 20544909 9429 + protein coding gene adaptor-related protein complex 2, mu 1 subunit
Tssr137445 16 20537501 to 20537511 10 + TSS region transcription start site region 137445
Tssr137446 16 20537593 to 20537618 25 + TSS region transcription start site region 137446
Tssr137447 16 20538220 to 20538250 30 + TSS region transcription start site region 137447
Tssr137448 16 20539974 to 20540022 48 + TSS region transcription start site region 137448
Tssr137449 16 20540586 to 20540597 11 + TSS region transcription start site region 137449
Tssr137450 16 20540627 to 20540640 13 + TSS region transcription start site region 137450
Tssr137451 16 20540663 to 20540766 103 + TSS region transcription start site region 137451
Gm15760 16 20545212 to 20548456 3244 - pseudogene predicted gene 15760
Cpgi8075 16 20548118 to 20549107 989 CpG island CpG island 8075
Tssr140388 16 20548432 to 20548460 28 - TSS region transcription start site region 140388
Abcf3 16 20548577 to 20561379 12802 + protein coding gene ATP-binding cassette, sub-family F (GCN20), member 3
Tssr137452 16 20548637 to 20548672 35 + TSS region transcription start site region 137452
Gm49744 16 20565577 to 20566028 451 - pseudogene predicted gene, 49744
Gm49745 16 20566358 to 20568508 2150 + lincRNA gene predicted gene, 49745
Gm49746 16 20571410 to 20571682 272 + pseudogene predicted gene, 49746
Gm20164 16 20583109 to 20583424 315 + pseudogene predicted gene, 20164
Gm35685 16 20587930 to 20589971 2041 - lncRNA gene predicted gene, 35685
Vwa5b2 16 20589471 to 20605377 15906 + protein coding gene von Willebrand factor A domain containing 5B2
Cpgi8076 16 20589507 to 20591955 2448 CpG island CpG island 8076
Tssr140389 16 20589984 to 20590042 58 - TSS region transcription start site region 140389
Tssr4811 16 20590088 to 20590115 27 + TSS region transcription start site region 4811
Gm49748 16 20590117 to 20590684 567 - antisense lncRNA gene predicted gene, 49748
Tssr137453 16 20590146 to 20590174 28 + TSS region transcription start site region 137453
Mir1224 16 20604452 to 20604536 84 + miRNA gene microRNA 1224
Alg3 16 20605374 to 20611735 6361 - protein coding gene asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
Tssr137454 16 20609989 to 20610009 20 + TSS region transcription start site region 137454
Cpgi8077 16 20610504 to 20610845 341 CpG island CpG island 8077
Tssr140390 16 20610741 to 20610757 16 - TSS region transcription start site region 140390
Cpgi8078 16 20611337 to 20612089 752 CpG island CpG island 8078
Tssr137455 16 20611585 to 20611635 50 + TSS region transcription start site region 137455
Eef1akmt4 16 20611593 to 20619011 7418 + protein coding gene EEF1A lysine methyltransferase 4
Gm49333 16 20611610 to 20645920 34310 + protein coding gene predicted gene, 49333
Tssr137456 16 20611675 to 20611686 11 + TSS region transcription start site region 137456
Camk2n2 16 20619215 to 20621278 2063 - protein coding gene calcium/calmodulin-dependent protein kinase II inhibitor 2
Cpgi8079 16 20619509 to 20622693 3184 CpG island CpG island 8079
Tssr140391 16 20619826 to 20619871 45 - TSS region transcription start site region 140391
Tssr140392 16 20621209 to 20621229 20 - TSS region transcription start site region 140392
Tssr140393 16 20621231 to 20621252 21 - TSS region transcription start site region 140393
Tssr140394 16 20621255 to 20621304 49 - TSS region transcription start site region 140394
Tssr140395 16 20621354 to 20621421 67 - TSS region transcription start site region 140395
Tssr140396 16 20621430 to 20621447 17 - TSS region transcription start site region 140396
Tssr140397 16 20621448 to 20621481 33 - TSS region transcription start site region 140397
Tssr140398 16 20622324 to 20622335 11 - TSS region transcription start site region 140398