Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:18861332-19241369

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(16Dgcr2-Hira)3Aam 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Alea A Mills 3
Del(16Dgcr2-Hira)1Rak 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Raju Kucherlapati 1
Del(16Cldn5-Hira)5Bld 16 18776847 to 18970309 193462 complex/cluster/region deletion, Chr 16, Antonio Baldini 5
Gm28539 16 18836584 to 18956247 119663 + protein coding gene predicted gene 28539
Mrpl40 16 18872018 to 18876637 4619 - protein coding gene mitochondrial ribosomal protein L40
Cpgi8063 16 18876294 to 18877960 1666 CpG island CpG island 8063
Tssr140293 16 18876522 to 18876570 48 - TSS region transcription start site region 140293
Tssr140294 16 18876598 to 18876609 11 - TSS region transcription start site region 140294
Tssr140295 16 18876619 to 18876653 34 - TSS region transcription start site region 140295
Tssr140296 16 18876655 to 18876668 13 - TSS region transcription start site region 140296
Tssr137389 16 18876709 to 18876739 30 + TSS region transcription start site region 137389
Hira 16 18877037 to 18970309 93272 + protein coding gene histone cell cycle regulator
Tssr137390 16 18877213 to 18877241 28 + TSS region transcription start site region 137390
Tssr137391 16 18877247 to 18877275 28 + TSS region transcription start site region 137391
Tssr137392 16 18893775 to 18893777 2 + TSS region transcription start site region 137392
Gm15799 16 18937401 to 18937689 288 + pseudogene predicted gene 15799
Gm15798 16 18944258 to 18944665 407 - pseudogene predicted gene 15798
Cpgi8064 16 18976574 to 18976770 196 CpG island CpG island 8064
Gm18747 16 19018058 to 19018702 644 - pseudogene predicted gene, 18747
Igl 16 19026858 to 19260844 233986 - complex/cluster/region immunoglobulin lambda chain complex
Gm10088 16 19028232 to 19028654 422 + pseudogene predicted gene 10088
Tssr137393 16 19035889 to 19035918 29 + TSS region transcription start site region 137393
Tssr137394 16 19051332 to 19051369 37 + TSS region transcription start site region 137394
Iglc1 16 19061752 to 19062071 319 - gene segment immunoglobulin lambda constant 1
Iglj1 16 19063225 to 19063262 37 - gene segment immunoglobulin lambda joining 1
Tssr140297 16 19063238 to 19063249 11 - TSS region transcription start site region 140297
Tssr140298 16 19063266 to 19063285 19 - TSS region transcription start site region 140298
Tssr137395 16 19063294 to 19063331 37 + TSS region transcription start site region 137395
Tssr140299 16 19063465 to 19063504 39 - TSS region transcription start site region 140299
Tssr140300 16 19063521 to 19063560 39 - TSS region transcription start site region 140300
Tssr137396 16 19063587 to 19063614 27 + TSS region transcription start site region 137396
Tssr140301 16 19063590 to 19063599 9 - TSS region transcription start site region 140301
Iglc3 16 19065365 to 19065681 316 - gene segment immunoglobulin lambda constant 3
Iglj3p 16 19066371 to 19066408 37 - pseudogenic gene segment immunoglobulin lambda joining 3 pseudogene
Iglj3 16 19067041 to 19067078 37 - gene segment immunoglobulin lambda joining 3
Tssr140302 16 19067059 to 19067094 35 - TSS region transcription start site region 140302
Tssr140303 16 19067104 to 19067109 5 - TSS region transcription start site region 140303
Tssr140304 16 19067115 to 19067165 50 - TSS region transcription start site region 140304
Tssr140305 16 19067183 to 19067195 12 - TSS region transcription start site region 140305
Tssr137397 16 19067232 to 19067245 13 + TSS region transcription start site region 137397
Iglv1 16 19085017 to 19085460 443 - gene segment immunoglobulin lambda variable 1
Tssr140306 16 19085490 to 19085506 16 - TSS region transcription start site region 140306
2010309G21Rik 16 19090060 to 19106870 16810 + antisense lncRNA gene RIKEN cDNA 2010309G21 gene
Gm18748 16 19161427 to 19168046 6619 - pseudogene predicted gene, 18748
Tssr137398 16 19179506 to 19179547 41 + TSS region transcription start site region 137398
Iglc4 16 19194999 to 19195312 313 - pseudogenic gene segment immunoglobulin lambda constant 4
Iglj4 16 19196495 to 19196536 41 - pseudogenic gene segment immunoglobulin lambda joining 4
Iglc2 16 19198536 to 19198852 316 - gene segment immunoglobulin lambda constant 2
Iglj2 16 19200198 to 19200235 37 - gene segment immunoglobulin lambda joining 2
Tssr140307 16 19200230 to 19200250 20 - TSS region transcription start site region 140307
Tssr140308 16 19200275 to 19200297 22 - TSS region transcription start site region 140308
Tssr140309 16 19200308 to 19200318 10 - TSS region transcription start site region 140309
Tssr140310 16 19200350 to 19200354 4 - TSS region transcription start site region 140310
Gm43388 16 19212660 to 19236776 24116 - lincRNA gene predicted gene 43388
Gm35545 16 19217787 to 19241334 23547 + lncRNA gene predicted gene, 35545
Tssr140311 16 19218418 to 19218427 9 - TSS region transcription start site region 140311
Tssr140312 16 19218449 to 19218456 7 - TSS region transcription start site region 140312
Tssr137399 16 19218572 to 19218603 31 + TSS region transcription start site region 137399
Tssr137400 16 19218613 to 19218620 7 + TSS region transcription start site region 137400
Gm42870 16 19231333 to 19234802 3469 + unclassified gene predicted gene 42870
Tssr137401 16 19232603 to 19232608 5 + TSS region transcription start site region 137401
Tssr140313 16 19235621 to 19235630 9 - TSS region transcription start site region 140313
Tssr140314 16 19236091 to 19236109 18 - TSS region transcription start site region 140314
Tssr140315 16 19236210 to 19236213 3 - TSS region transcription start site region 140315
Tssr140316 16 19236218 to 19236251 33 - TSS region transcription start site region 140316
Tssr140317 16 19236255 to 19236264 9 - TSS region transcription start site region 140317
Tssr137402 16 19236342 to 19236352 10 + TSS region transcription start site region 137402
Tssr137403 16 19236391 to 19236403 12 + TSS region transcription start site region 137403
Tssr140318 16 19236818 to 19236829 11 - TSS region transcription start site region 140318
Tssr140319 16 19236846 to 19236856 10 - TSS region transcription start site region 140319
Tssr140320 16 19236860 to 19236866 6 - TSS region transcription start site region 140320
Tssr140321 16 19236868 to 19236892 24 - TSS region transcription start site region 140321
Tssr140322 16 19236898 to 19236907 9 - TSS region transcription start site region 140322
Tssr140323 16 19241104 to 19241108 4 - TSS region transcription start site region 140323
Iglv3 16 19241208 to 19241679 471 - gene segment immunoglobulin lambda variable 3
Tssr137404 16 19241214 to 19241259 45 + TSS region transcription start site region 137404
Tssr137405 16 19241274 to 19241284 10 + TSS region transcription start site region 137405