Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:18441584-19351247

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161 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(16Dgcr2-Hira)1Rak 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Raju Kucherlapati 1
Del(16Dgcr2-Hira)3Aam 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Alea A Mills 3
Txnrd2 16 18426417 to 18479073 52656 + protein coding gene thioredoxin reductase 2
Tssr140263 16 18460047 to 18460081 34 - TSS region transcription start site region 140263
Gm49588 16 18482056 to 18486545 4489 + unclassified gene predicted gene, 49588
Cpgi8047 16 18498262 to 18499637 1375 CpG island CpG island 8047
Gnb1l 16 18498713 to 18566679 67966 + protein coding gene guanine nucleotide binding protein (G protein), beta polypeptide 1-like
Tssr137379 16 18498784 to 18498816 32 + TSS region transcription start site region 137379
Tssr137380 16 18498865 to 18498942 77 + TSS region transcription start site region 137380
Rtl10 16 18498901 to 18501658 2757 + protein coding gene retrotransposon Gag like 10
Tssr140264 16 18533331 to 18533341 10 - TSS region transcription start site region 140264
Tssr137381 16 18548714 to 18548722 8 + TSS region transcription start site region 137381
Tssr137382 16 18548730 to 18548735 5 + TSS region transcription start site region 137382
Cpgi8048 16 18581276 to 18583233 1957 CpG island CpG island 8048
Tbx1 16 18581704 to 18590671 8967 - protein coding gene T-box 1
Cpgi8049 16 18586075 to 18587294 1219 CpG island CpG island 8049
Tssr140265 16 18586893 to 18586898 5 - TSS region transcription start site region 140265
Tssr140266 16 18586959 to 18586970 11 - TSS region transcription start site region 140266
Tssr140267 16 18586983 to 18587013 30 - TSS region transcription start site region 140267
Cpgi8050 16 18587761 to 18589371 1610 CpG island CpG island 8050
Tssr140268 16 18588198 to 18588208 10 - TSS region transcription start site region 140268
Tssr140269 16 18588772 to 18588784 12 - TSS region transcription start site region 140269
Tssr140270 16 18588818 to 18588832 14 - TSS region transcription start site region 140270
Tssr140271 16 18588880 to 18588909 29 - TSS region transcription start site region 140271
Gm35369 16 18588970 to 18596251 7281 + lncRNA gene predicted gene, 35369
Cpgi8051 16 18590155 to 18591122 967 CpG island CpG island 8051
Cpgi8052 16 18591256 to 18592080 824 CpG island CpG island 8052
4930588K23Rik 16 18606662 to 18610659 3997 + lincRNA gene RIKEN cDNA 4930588K23 gene
Cpgi8053 16 18617473 to 18617998 525 CpG island CpG island 8053
Gp1bb 16 18620319 to 18622403 2084 - protein coding gene glycoprotein Ib, beta polypeptide
Gm49601 16 18620466 to 18626427 5961 - protein coding gene predicted gene, 49601
Cpgi8054 16 18620495 to 18622203 1708 CpG island CpG island 8054
Tssr140272 16 18621604 to 18621615 11 - TSS region transcription start site region 140272
Tssr140273 16 18621622 to 18621637 15 - TSS region transcription start site region 140273
Tssr140274 16 18621639 to 18621669 30 - TSS region transcription start site region 140274
Sept5 16 18621811 to 18629938 8127 - protein coding gene septin 5
Tssr140275 16 18621993 to 18622020 27 - TSS region transcription start site region 140275
Cpgi8055 16 18623172 to 18623351 179 CpG island CpG island 8055
Tssr140276 16 18623347 to 18623350 3 - TSS region transcription start site region 140276
Cpgi8056 16 18625814 to 18627096 1282 CpG island CpG island 8056
Tssr140277 16 18626396 to 18626414 18 - TSS region transcription start site region 140277
Tssr140278 16 18626423 to 18626461 38 - TSS region transcription start site region 140278
Tssr140279 16 18626671 to 18626681 10 - TSS region transcription start site region 140279
Tssr140280 16 18626693 to 18626702 9 - TSS region transcription start site region 140280
Cpgi8057 16 18629055 to 18630538 1483 CpG island CpG island 8057
Tssr140281 16 18629793 to 18629806 13 - TSS region transcription start site region 140281
Tssr140282 16 18629864 to 18629951 87 - TSS region transcription start site region 140282
Tssr140283 16 18629960 to 18629971 11 - TSS region transcription start site region 140283
Tssr140284 16 18630093 to 18630139 46 - TSS region transcription start site region 140284
Rps2-ps7 16 18681337 to 18682216 879 - pseudogene ribosomal protein S2, pseudogene 7
Cpgi8058 16 18682085 to 18682314 229 CpG island CpG island 8058
Cpgi8059 16 18686969 to 18687205 236 CpG island CpG island 8059
Gm41429 16 18696660 to 18718994 22334 + lncRNA gene predicted gene, 41429
Gm41428 16 18731715 to 18734266 2551 + lncRNA gene predicted gene, 41428
Tssr140285 16 18733151 to 18733193 42 - TSS region transcription start site region 140285
Tssr140286 16 18733222 to 18733246 24 - TSS region transcription start site region 140286
Tssr137383 16 18776100 to 18776139 39 + TSS region transcription start site region 137383
Tssr140287 16 18776648 to 18776681 33 - TSS region transcription start site region 140287
Tssr137384 16 18776839 to 18776856 17 + TSS region transcription start site region 137384
Cldn5 16 18776847 to 18778262 1415 + protein coding gene claudin 5
Del(16Cldn5-Hira)5Bld 16 18776847 to 18970309 193462 complex/cluster/region deletion, Chr 16, Antonio Baldini 5
Cpgi8060 16 18776877 to 18777955 1078 CpG island CpG island 8060
Cdc45 16 18780447 to 18811987 31540 - protein coding gene cell division cycle 45
Tssr140288 16 18784309 to 18784313 4 - TSS region transcription start site region 140288
Cpgi8061 16 18811317 to 18812701 1384 CpG island CpG island 8061
Tssr140289 16 18811584 to 18811609 25 - TSS region transcription start site region 140289
Tssr140290 16 18811615 to 18811635 20 - TSS region transcription start site region 140290
Tssr140291 16 18811638 to 18811643 5 - TSS region transcription start site region 140291
Tssr137385 16 18811772 to 18811787 15 + TSS region transcription start site region 137385
Ufd1 16 18811819 to 18835261 23442 + protein coding gene ubiquitin recognition factor in ER-associated degradation 1
Tssr140292 16 18812003 to 18812025 22 - TSS region transcription start site region 140292
Tssr137386 16 18812286 to 18812336 50 + TSS region transcription start site region 137386
D630030B22Rik 16 18829324 to 18831490 2166 unclassified gene RIKEN cDNA D630030B22 gene
9430099O15Rik 16 18831431 to 18833449 2018 unclassified gene RIKEN cDNA 9430099O15 gene
Tssr137387 16 18832176 to 18832183 7 + TSS region transcription start site region 137387
Cpgi8062 16 18836455 to 18837020 565 CpG island CpG island 8062
Tssr137388 16 18836573 to 18836583 10 + TSS region transcription start site region 137388
2510002D24Rik 16 18836580 to 18840113 3533 + protein coding gene RIKEN cDNA 2510002D24 gene
Gm28539 16 18836584 to 18956247 119663 + protein coding gene predicted gene 28539
Mrpl40 16 18872018 to 18876637 4619 - protein coding gene mitochondrial ribosomal protein L40
Cpgi8063 16 18876294 to 18877960 1666 CpG island CpG island 8063
Tssr140293 16 18876522 to 18876570 48 - TSS region transcription start site region 140293
Tssr140294 16 18876598 to 18876609 11 - TSS region transcription start site region 140294
Tssr140295 16 18876619 to 18876653 34 - TSS region transcription start site region 140295
Tssr140296 16 18876655 to 18876668 13 - TSS region transcription start site region 140296
Tssr137389 16 18876709 to 18876739 30 + TSS region transcription start site region 137389
Hira 16 18877037 to 18970309 93272 + protein coding gene histone cell cycle regulator
Tssr137390 16 18877213 to 18877241 28 + TSS region transcription start site region 137390
Tssr137391 16 18877247 to 18877275 28 + TSS region transcription start site region 137391
Tssr137392 16 18893775 to 18893777 2 + TSS region transcription start site region 137392
Gm15799 16 18937401 to 18937689 288 + pseudogene predicted gene 15799
Gm15798 16 18944258 to 18944665 407 - pseudogene predicted gene 15798
Cpgi8064 16 18976574 to 18976770 196 CpG island CpG island 8064
Gm18747 16 19018058 to 19018702 644 - pseudogene predicted gene, 18747
Igl 16 19026858 to 19260844 233986 - complex/cluster/region immunoglobulin lambda chain complex
Gm10088 16 19028232 to 19028654 422 + pseudogene predicted gene 10088
Tssr137393 16 19035889 to 19035918 29 + TSS region transcription start site region 137393
Tssr137394 16 19051332 to 19051369 37 + TSS region transcription start site region 137394
Iglc1 16 19061752 to 19062071 319 - gene segment immunoglobulin lambda constant 1
Iglj1 16 19063225 to 19063262 37 - gene segment immunoglobulin lambda joining 1
Tssr140297 16 19063238 to 19063249 11 - TSS region transcription start site region 140297
Tssr140298 16 19063266 to 19063285 19 - TSS region transcription start site region 140298
Tssr137395 16 19063294 to 19063331 37 + TSS region transcription start site region 137395
Tssr140299 16 19063465 to 19063504 39 - TSS region transcription start site region 140299
Tssr140300 16 19063521 to 19063560 39 - TSS region transcription start site region 140300
Tssr137396 16 19063587 to 19063614 27 + TSS region transcription start site region 137396
Tssr140301 16 19063590 to 19063599 9 - TSS region transcription start site region 140301
Iglc3 16 19065365 to 19065681 316 - gene segment immunoglobulin lambda constant 3
Iglj3p 16 19066371 to 19066408 37 - pseudogenic gene segment immunoglobulin lambda joining 3 pseudogene
Iglj3 16 19067041 to 19067078 37 - gene segment immunoglobulin lambda joining 3
Tssr140302 16 19067059 to 19067094 35 - TSS region transcription start site region 140302
Tssr140303 16 19067104 to 19067109 5 - TSS region transcription start site region 140303
Tssr140304 16 19067115 to 19067165 50 - TSS region transcription start site region 140304
Tssr140305 16 19067183 to 19067195 12 - TSS region transcription start site region 140305
Tssr137397 16 19067232 to 19067245 13 + TSS region transcription start site region 137397
Iglv1 16 19085017 to 19085460 443 - gene segment immunoglobulin lambda variable 1
Tssr140306 16 19085490 to 19085506 16 - TSS region transcription start site region 140306
2010309G21Rik 16 19090060 to 19106870 16810 + antisense lncRNA gene RIKEN cDNA 2010309G21 gene
Gm18748 16 19161427 to 19168046 6619 - pseudogene predicted gene, 18748
Tssr137398 16 19179506 to 19179547 41 + TSS region transcription start site region 137398
Iglc4 16 19194999 to 19195312 313 - pseudogenic gene segment immunoglobulin lambda constant 4
Iglj4 16 19196495 to 19196536 41 - pseudogenic gene segment immunoglobulin lambda joining 4
Iglc2 16 19198536 to 19198852 316 - gene segment immunoglobulin lambda constant 2
Iglj2 16 19200198 to 19200235 37 - gene segment immunoglobulin lambda joining 2
Tssr140307 16 19200230 to 19200250 20 - TSS region transcription start site region 140307
Tssr140308 16 19200275 to 19200297 22 - TSS region transcription start site region 140308
Tssr140309 16 19200308 to 19200318 10 - TSS region transcription start site region 140309
Tssr140310 16 19200350 to 19200354 4 - TSS region transcription start site region 140310
Gm43388 16 19212660 to 19236776 24116 - lincRNA gene predicted gene 43388
Gm35545 16 19217787 to 19241334 23547 + lncRNA gene predicted gene, 35545
Tssr140311 16 19218418 to 19218427 9 - TSS region transcription start site region 140311
Tssr140312 16 19218449 to 19218456 7 - TSS region transcription start site region 140312
Tssr137399 16 19218572 to 19218603 31 + TSS region transcription start site region 137399
Tssr137400 16 19218613 to 19218620 7 + TSS region transcription start site region 137400
Gm42870 16 19231333 to 19234802 3469 + unclassified gene predicted gene 42870
Tssr137401 16 19232603 to 19232608 5 + TSS region transcription start site region 137401
Tssr140313 16 19235621 to 19235630 9 - TSS region transcription start site region 140313
Tssr140314 16 19236091 to 19236109 18 - TSS region transcription start site region 140314
Tssr140315 16 19236210 to 19236213 3 - TSS region transcription start site region 140315
Tssr140316 16 19236218 to 19236251 33 - TSS region transcription start site region 140316
Tssr140317 16 19236255 to 19236264 9 - TSS region transcription start site region 140317
Tssr137402 16 19236342 to 19236352 10 + TSS region transcription start site region 137402
Tssr137403 16 19236391 to 19236403 12 + TSS region transcription start site region 137403
Tssr140318 16 19236818 to 19236829 11 - TSS region transcription start site region 140318
Tssr140319 16 19236846 to 19236856 10 - TSS region transcription start site region 140319
Tssr140320 16 19236860 to 19236866 6 - TSS region transcription start site region 140320
Tssr140321 16 19236868 to 19236892 24 - TSS region transcription start site region 140321
Tssr140322 16 19236898 to 19236907 9 - TSS region transcription start site region 140322
Tssr140323 16 19241104 to 19241108 4 - TSS region transcription start site region 140323
Iglv3 16 19241208 to 19241679 471 - gene segment immunoglobulin lambda variable 3
Tssr137404 16 19241214 to 19241259 45 + TSS region transcription start site region 137404
Tssr137405 16 19241274 to 19241284 10 + TSS region transcription start site region 137405
Tssr140324 16 19241695 to 19241710 15 - TSS region transcription start site region 140324
Tssr140325 16 19241712 to 19241736 24 - TSS region transcription start site region 140325
Tssr140326 16 19241807 to 19241814 7 - TSS region transcription start site region 140326
A530030E21Rik 16 19243525 to 19244834 1309 + unclassified gene RIKEN cDNA A530030E21 gene
Iglv2 16 19260403 to 19260844 441 - gene segment immunoglobulin lambda variable 2
Tssr140327 16 19260875 to 19260889 14 - TSS region transcription start site region 140327
Olfr164 16 19285794 to 19286741 947 - protein coding gene olfactory receptor 164
Gm22158 16 19307699 to 19307824 125 + snoRNA gene predicted gene, 22158
Gm23612 16 19319686 to 19319795 109 + miRNA gene predicted gene, 23612