Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:18152689-18514717

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(16Dgcr2-Arvcf)1Ais 16 17840355 to 18407076 566721 chromosomal duplication duplication, Chr 16, Arthur I Skoultchi 1
Del(16Dgcr2-Arvcf)1Ais 16 17840355 to 18407076 566721 complex/cluster/region deletion, Chr 16, Arthur I Skoultchi 1
Mir6366 16 18165089 to 18165170 81 - miRNA gene microRNA 6366
Gm34679 16 18169515 to 18174463 4948 + lncRNA gene predicted gene, 34679
4933432I09Rik 16 18209686 to 18213863 4177 - lincRNA gene RIKEN cDNA 4933432I09 gene
4930483P17Rik 16 18213649 to 18215250 1601 + lincRNA gene RIKEN cDNA 4930483P17 gene
Tssr140230 16 18213866 to 18213882 16 - TSS region transcription start site region 140230
Tssr137359 16 18213942 to 18213949 7 + TSS region transcription start site region 137359
Tssr137360 16 18213951 to 18213961 10 + TSS region transcription start site region 137360
Tssr137361 16 18213967 to 18214008 41 + TSS region transcription start site region 137361
Tssr137362 16 18217873 to 18217884 11 + TSS region transcription start site region 137362
Ccdc188 16 18217879 to 18220348 2469 + protein coding gene coiled-coil domain containing 188
Tssr137363 16 18217892 to 18217900 8 + TSS region transcription start site region 137363
Zdhhc8 16 18220753 to 18235136 14383 - protein coding gene zinc finger, DHHC domain containing 8
Cpgi8040 16 18234393 to 18235803 1410 CpG island CpG island 8040
Tssr140231 16 18235074 to 18235184 110 - TSS region transcription start site region 140231
Ranbp1 16 18239979 to 18248694 8715 - protein coding gene RAN binding protein 1
Gm25777 16 18240717 to 18240842 125 - snoRNA gene predicted gene, 25777
Gm49776 16 18245215 to 18258321 13106 - protein coding gene predicted gene, 49776
Tssr140232 16 18245225 to 18245238 13 - TSS region transcription start site region 140232
Tssr140233 16 18247366 to 18247387 21 - TSS region transcription start site region 140233
Tssr140234 16 18247404 to 18247419 15 - TSS region transcription start site region 140234
Cpgi8041 16 18248012 to 18250020 2008 CpG island CpG island 8041
Tssr140235 16 18248611 to 18248692 81 - TSS region transcription start site region 140235
Tssr140236 16 18248697 to 18248709 12 - TSS region transcription start site region 140236
Tssr140237 16 18248727 to 18248744 17 - TSS region transcription start site region 140237
Trmt2a 16 18248858 to 18254772 5914 + protein coding gene TRM2 tRNA methyltransferase 2A
Tssr137364 16 18248866 to 18248919 53 + TSS region transcription start site region 137364
Tssr137365 16 18248937 to 18248948 11 + TSS region transcription start site region 137365
Tssr137366 16 18248961 to 18249041 80 + TSS region transcription start site region 137366
Tssr140238 16 18249231 to 18249253 22 - TSS region transcription start site region 140238
Dgcr8 16 18253948 to 18289246 35298 - protein coding gene DGCR8, microprocessor complex subunit
Mir1306 16 18284239 to 18284317 78 - miRNA gene microRNA 1306
Gm24572 16 18284550 to 18284637 87 - miRNA gene predicted gene, 24572
Tssr140239 16 18284951 to 18284955 4 - TSS region transcription start site region 140239
Cpgi8042 16 18288629 to 18289574 945 CpG island CpG island 8042
Tssr140240 16 18289186 to 18289196 10 - TSS region transcription start site region 140240
Tssr140241 16 18289199 to 18289260 61 - TSS region transcription start site region 140241
Tango2 16 18300825 to 18348098 47273 - protein coding gene transport and golgi organization 2
Mir185 16 18327401 to 18327465 64 - miRNA gene microRNA 185
9530053J19Rik 16 18332689 to 18334717 2028 unclassified gene RIKEN cDNA 9530053J19 gene
Cpgi8043 16 18343310 to 18344252 942 CpG island CpG island 8043
Tssr140242 16 18343882 to 18343932 50 - TSS region transcription start site region 140242
Cpgi8044 16 18347887 to 18349021 1134 CpG island CpG island 8044
Tssr140243 16 18348013 to 18348088 75 - TSS region transcription start site region 140243
Tssr137367 16 18348181 to 18348273 92 + TSS region transcription start site region 137367
Arvcf 16 18348182 to 18407076 58894 + protein coding gene armadillo repeat gene deleted in velocardiofacial syndrome
Tssr137368 16 18348341 to 18348352 11 + TSS region transcription start site region 137368
Gm26170 16 18355616 to 18355763 147 + snRNA gene predicted gene, 26170
Gm26219 16 18361436 to 18361506 70 - miRNA gene predicted gene, 26219
Tssr137369 16 18388995 to 18389043 48 + TSS region transcription start site region 137369
Cpgi8045 16 18392398 to 18393151 753 CpG island CpG island 8045
Tssr137370 16 18392554 to 18392622 68 + TSS region transcription start site region 137370
Tssr137371 16 18392631 to 18392643 12 + TSS region transcription start site region 137371
Tssr140244 16 18400826 to 18400842 16 - TSS region transcription start site region 140244
Comt 16 18406882 to 18426716 19834 - protein coding gene catechol-O-methyltransferase
Tssr137372 16 18407631 to 18407688 57 + TSS region transcription start site region 137372
Tssr140245 16 18407943 to 18407957 14 - TSS region transcription start site region 140245
Tssr140246 16 18407998 to 18408024 26 - TSS region transcription start site region 140246
Tssr140247 16 18410778 to 18410800 22 - TSS region transcription start site region 140247
Tssr140248 16 18411757 to 18411764 7 - TSS region transcription start site region 140248
Tssr140249 16 18411782 to 18411878 96 - TSS region transcription start site region 140249
Tssr140250 16 18411893 to 18411904 11 - TSS region transcription start site region 140250
Tssr140251 16 18411919 to 18411930 11 - TSS region transcription start site region 140251
Tssr140252 16 18411947 to 18411964 17 - TSS region transcription start site region 140252
Tssr140253 16 18413452 to 18413467 15 - TSS region transcription start site region 140253
D16Jhu32 16 18414626 to 18415012 386 DNA segment DNA segment, Chr 16, Johns Hopkins University 32
Gm15764 16 18416682 to 18421997 5315 + lncRNA gene predicted gene 15764
Cpgi8046 16 18426096 to 18426824 728 CpG island CpG island 8046
Tssr140254 16 18426372 to 18426389 17 - TSS region transcription start site region 140254
Tssr140255 16 18426393 to 18426420 27 - TSS region transcription start site region 140255
Tssr137373 16 18426400 to 18426409 9 + TSS region transcription start site region 137373
Tssr137374 16 18426415 to 18426450 35 + TSS region transcription start site region 137374
Txnrd2 16 18426417 to 18479073 52656 + protein coding gene thioredoxin reductase 2
Tssr140256 16 18426425 to 18426434 9 - TSS region transcription start site region 140256
Tssr140257 16 18426451 to 18426462 11 - TSS region transcription start site region 140257
Tssr140258 16 18426474 to 18426503 29 - TSS region transcription start site region 140258
Tssr140259 16 18426513 to 18426542 29 - TSS region transcription start site region 140259
Tssr140260 16 18426543 to 18426583 40 - TSS region transcription start site region 140260
Tssr140261 16 18426590 to 18426601 11 - TSS region transcription start site region 140261
Tssr140262 16 18426602 to 18426619 17 - TSS region transcription start site region 140262
Tssr137375 16 18428916 to 18428934 18 + TSS region transcription start site region 137375
Tssr137376 16 18428937 to 18428970 33 + TSS region transcription start site region 137376
Tssr137377 16 18428974 to 18429008 34 + TSS region transcription start site region 137377
Tssr137378 16 18429808 to 18429820 12 + TSS region transcription start site region 137378
Tssr140263 16 18460047 to 18460081 34 - TSS region transcription start site region 140263
Gm49588 16 18482056 to 18486545 4489 + unclassified gene predicted gene, 49588
Cpgi8047 16 18498262 to 18499637 1375 CpG island CpG island 8047
Gnb1l 16 18498713 to 18566679 67966 + protein coding gene guanine nucleotide binding protein (G protein), beta polypeptide 1-like
Tssr137379 16 18498784 to 18498816 32 + TSS region transcription start site region 137379
Tssr137380 16 18498865 to 18498942 77 + TSS region transcription start site region 137380
Rtl10 16 18498901 to 18501658 2757 + protein coding gene retrotransposon Gag like 10