Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:18111431-19553449

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258 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(16Dgcr2-Hira)1Rak 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Raju Kucherlapati 1
Dp(16Dgcr2-Arvcf)1Ais 16 17840355 to 18407076 566721 chromosomal duplication duplication, Chr 16, Arthur I Skoultchi 1
Del(16Dgcr2-Hira)3Aam 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Alea A Mills 3
Del(16Dgcr2-Arvcf)1Ais 16 17840355 to 18407076 566721 complex/cluster/region deletion, Chr 16, Arthur I Skoultchi 1
D16Mit143 16 18118096 to 18118288 192 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 143
Cpgi8039 16 18126776 to 18128782 2006 CpG island CpG island 8039
Tssr137354 16 18127376 to 18127437 61 + TSS region transcription start site region 137354
Tssr137355 16 18127607 to 18127649 42 + TSS region transcription start site region 137355
Tssr137356 16 18127655 to 18127662 7 + TSS region transcription start site region 137356
Tssr137357 16 18127669 to 18127682 13 + TSS region transcription start site region 137357
Rtn4r 16 18127706 to 18152408 24702 + protein coding gene reticulon 4 receptor
Tssr137358 16 18143514 to 18143526 12 + TSS region transcription start site region 137358
Mir6366 16 18165089 to 18165170 81 - miRNA gene microRNA 6366
Gm34679 16 18169515 to 18174463 4948 + lncRNA gene predicted gene, 34679
4933432I09Rik 16 18209686 to 18213863 4177 - lincRNA gene RIKEN cDNA 4933432I09 gene
4930483P17Rik 16 18213649 to 18215250 1601 + lincRNA gene RIKEN cDNA 4930483P17 gene
Tssr140230 16 18213866 to 18213882 16 - TSS region transcription start site region 140230
Tssr137359 16 18213942 to 18213949 7 + TSS region transcription start site region 137359
Tssr137360 16 18213951 to 18213961 10 + TSS region transcription start site region 137360
Tssr137361 16 18213967 to 18214008 41 + TSS region transcription start site region 137361
Tssr137362 16 18217873 to 18217884 11 + TSS region transcription start site region 137362
Ccdc188 16 18217879 to 18220348 2469 + protein coding gene coiled-coil domain containing 188
Tssr137363 16 18217892 to 18217900 8 + TSS region transcription start site region 137363
Zdhhc8 16 18220753 to 18235136 14383 - protein coding gene zinc finger, DHHC domain containing 8
Cpgi8040 16 18234393 to 18235803 1410 CpG island CpG island 8040
Tssr140231 16 18235074 to 18235184 110 - TSS region transcription start site region 140231
Ranbp1 16 18239979 to 18248694 8715 - protein coding gene RAN binding protein 1
Gm25777 16 18240717 to 18240842 125 - snoRNA gene predicted gene, 25777
Gm49776 16 18245215 to 18258321 13106 - protein coding gene predicted gene, 49776
Tssr140232 16 18245225 to 18245238 13 - TSS region transcription start site region 140232
Tssr140233 16 18247366 to 18247387 21 - TSS region transcription start site region 140233
Tssr140234 16 18247404 to 18247419 15 - TSS region transcription start site region 140234
Cpgi8041 16 18248012 to 18250020 2008 CpG island CpG island 8041
Tssr140235 16 18248611 to 18248692 81 - TSS region transcription start site region 140235
Tssr140236 16 18248697 to 18248709 12 - TSS region transcription start site region 140236
Tssr140237 16 18248727 to 18248744 17 - TSS region transcription start site region 140237
Trmt2a 16 18248858 to 18254772 5914 + protein coding gene TRM2 tRNA methyltransferase 2A
Tssr137364 16 18248866 to 18248919 53 + TSS region transcription start site region 137364
Tssr137365 16 18248937 to 18248948 11 + TSS region transcription start site region 137365
Tssr137366 16 18248961 to 18249041 80 + TSS region transcription start site region 137366
Tssr140238 16 18249231 to 18249253 22 - TSS region transcription start site region 140238
Dgcr8 16 18253948 to 18289246 35298 - protein coding gene DGCR8, microprocessor complex subunit
Mir1306 16 18284239 to 18284317 78 - miRNA gene microRNA 1306
Gm24572 16 18284550 to 18284637 87 - miRNA gene predicted gene, 24572
Tssr140239 16 18284951 to 18284955 4 - TSS region transcription start site region 140239
Cpgi8042 16 18288629 to 18289574 945 CpG island CpG island 8042
Tssr140240 16 18289186 to 18289196 10 - TSS region transcription start site region 140240
Tssr140241 16 18289199 to 18289260 61 - TSS region transcription start site region 140241
Tango2 16 18300825 to 18348098 47273 - protein coding gene transport and golgi organization 2
Mir185 16 18327401 to 18327465 64 - miRNA gene microRNA 185
9530053J19Rik 16 18332689 to 18334717 2028 unclassified gene RIKEN cDNA 9530053J19 gene
Cpgi8043 16 18343310 to 18344252 942 CpG island CpG island 8043
Tssr140242 16 18343882 to 18343932 50 - TSS region transcription start site region 140242
Cpgi8044 16 18347887 to 18349021 1134 CpG island CpG island 8044
Tssr140243 16 18348013 to 18348088 75 - TSS region transcription start site region 140243
Tssr137367 16 18348181 to 18348273 92 + TSS region transcription start site region 137367
Arvcf 16 18348182 to 18407076 58894 + protein coding gene armadillo repeat gene deleted in velocardiofacial syndrome
Tssr137368 16 18348341 to 18348352 11 + TSS region transcription start site region 137368
Gm26170 16 18355616 to 18355763 147 + snRNA gene predicted gene, 26170
Gm26219 16 18361436 to 18361506 70 - miRNA gene predicted gene, 26219
Tssr137369 16 18388995 to 18389043 48 + TSS region transcription start site region 137369
Cpgi8045 16 18392398 to 18393151 753 CpG island CpG island 8045
Tssr137370 16 18392554 to 18392622 68 + TSS region transcription start site region 137370
Tssr137371 16 18392631 to 18392643 12 + TSS region transcription start site region 137371
Tssr140244 16 18400826 to 18400842 16 - TSS region transcription start site region 140244
Comt 16 18406882 to 18426716 19834 - protein coding gene catechol-O-methyltransferase
Tssr137372 16 18407631 to 18407688 57 + TSS region transcription start site region 137372
Tssr140245 16 18407943 to 18407957 14 - TSS region transcription start site region 140245
Tssr140246 16 18407998 to 18408024 26 - TSS region transcription start site region 140246
Tssr140247 16 18410778 to 18410800 22 - TSS region transcription start site region 140247
Tssr140248 16 18411757 to 18411764 7 - TSS region transcription start site region 140248
Tssr140249 16 18411782 to 18411878 96 - TSS region transcription start site region 140249
Tssr140250 16 18411893 to 18411904 11 - TSS region transcription start site region 140250
Tssr140251 16 18411919 to 18411930 11 - TSS region transcription start site region 140251
Tssr140252 16 18411947 to 18411964 17 - TSS region transcription start site region 140252
Tssr140253 16 18413452 to 18413467 15 - TSS region transcription start site region 140253
D16Jhu32 16 18414626 to 18415012 386 DNA segment DNA segment, Chr 16, Johns Hopkins University 32
Gm15764 16 18416682 to 18421997 5315 + lncRNA gene predicted gene 15764
Cpgi8046 16 18426096 to 18426824 728 CpG island CpG island 8046
Tssr140254 16 18426372 to 18426389 17 - TSS region transcription start site region 140254
Tssr140255 16 18426393 to 18426420 27 - TSS region transcription start site region 140255
Tssr137373 16 18426400 to 18426409 9 + TSS region transcription start site region 137373
Tssr137374 16 18426415 to 18426450 35 + TSS region transcription start site region 137374
Txnrd2 16 18426417 to 18479073 52656 + protein coding gene thioredoxin reductase 2
Tssr140256 16 18426425 to 18426434 9 - TSS region transcription start site region 140256
Tssr140257 16 18426451 to 18426462 11 - TSS region transcription start site region 140257
Tssr140258 16 18426474 to 18426503 29 - TSS region transcription start site region 140258
Tssr140259 16 18426513 to 18426542 29 - TSS region transcription start site region 140259
Tssr140260 16 18426543 to 18426583 40 - TSS region transcription start site region 140260
Tssr140261 16 18426590 to 18426601 11 - TSS region transcription start site region 140261
Tssr140262 16 18426602 to 18426619 17 - TSS region transcription start site region 140262
Tssr137375 16 18428916 to 18428934 18 + TSS region transcription start site region 137375
Tssr137376 16 18428937 to 18428970 33 + TSS region transcription start site region 137376
Tssr137377 16 18428974 to 18429008 34 + TSS region transcription start site region 137377
Tssr137378 16 18429808 to 18429820 12 + TSS region transcription start site region 137378
Tssr140263 16 18460047 to 18460081 34 - TSS region transcription start site region 140263
Gm49588 16 18482056 to 18486545 4489 + unclassified gene predicted gene, 49588
Cpgi8047 16 18498262 to 18499637 1375 CpG island CpG island 8047
Gnb1l 16 18498713 to 18566679 67966 + protein coding gene guanine nucleotide binding protein (G protein), beta polypeptide 1-like
Tssr137379 16 18498784 to 18498816 32 + TSS region transcription start site region 137379
Tssr137380 16 18498865 to 18498942 77 + TSS region transcription start site region 137380
Rtl10 16 18498901 to 18501658 2757 + protein coding gene retrotransposon Gag like 10
Tssr140264 16 18533331 to 18533341 10 - TSS region transcription start site region 140264
Tssr137381 16 18548714 to 18548722 8 + TSS region transcription start site region 137381
Tssr137382 16 18548730 to 18548735 5 + TSS region transcription start site region 137382
Cpgi8048 16 18581276 to 18583233 1957 CpG island CpG island 8048
Tbx1 16 18581704 to 18590671 8967 - protein coding gene T-box 1
Cpgi8049 16 18586075 to 18587294 1219 CpG island CpG island 8049
Tssr140265 16 18586893 to 18586898 5 - TSS region transcription start site region 140265
Tssr140266 16 18586959 to 18586970 11 - TSS region transcription start site region 140266
Tssr140267 16 18586983 to 18587013 30 - TSS region transcription start site region 140267
Cpgi8050 16 18587761 to 18589371 1610 CpG island CpG island 8050
Tssr140268 16 18588198 to 18588208 10 - TSS region transcription start site region 140268
Tssr140269 16 18588772 to 18588784 12 - TSS region transcription start site region 140269
Tssr140270 16 18588818 to 18588832 14 - TSS region transcription start site region 140270
Tssr140271 16 18588880 to 18588909 29 - TSS region transcription start site region 140271
Gm35369 16 18588970 to 18596251 7281 + lncRNA gene predicted gene, 35369
Cpgi8051 16 18590155 to 18591122 967 CpG island CpG island 8051
Cpgi8052 16 18591256 to 18592080 824 CpG island CpG island 8052
4930588K23Rik 16 18606662 to 18610659 3997 + lincRNA gene RIKEN cDNA 4930588K23 gene
Cpgi8053 16 18617473 to 18617998 525 CpG island CpG island 8053
Gp1bb 16 18620319 to 18622403 2084 - protein coding gene glycoprotein Ib, beta polypeptide
Gm49601 16 18620466 to 18626427 5961 - protein coding gene predicted gene, 49601
Cpgi8054 16 18620495 to 18622203 1708 CpG island CpG island 8054
Tssr140272 16 18621604 to 18621615 11 - TSS region transcription start site region 140272
Tssr140273 16 18621622 to 18621637 15 - TSS region transcription start site region 140273
Tssr140274 16 18621639 to 18621669 30 - TSS region transcription start site region 140274
Sept5 16 18621811 to 18629938 8127 - protein coding gene septin 5
Tssr140275 16 18621993 to 18622020 27 - TSS region transcription start site region 140275
Cpgi8055 16 18623172 to 18623351 179 CpG island CpG island 8055
Tssr140276 16 18623347 to 18623350 3 - TSS region transcription start site region 140276
Cpgi8056 16 18625814 to 18627096 1282 CpG island CpG island 8056
Tssr140277 16 18626396 to 18626414 18 - TSS region transcription start site region 140277
Tssr140278 16 18626423 to 18626461 38 - TSS region transcription start site region 140278
Tssr140279 16 18626671 to 18626681 10 - TSS region transcription start site region 140279
Tssr140280 16 18626693 to 18626702 9 - TSS region transcription start site region 140280
Cpgi8057 16 18629055 to 18630538 1483 CpG island CpG island 8057
Tssr140281 16 18629793 to 18629806 13 - TSS region transcription start site region 140281
Tssr140282 16 18629864 to 18629951 87 - TSS region transcription start site region 140282
Tssr140283 16 18629960 to 18629971 11 - TSS region transcription start site region 140283
Tssr140284 16 18630093 to 18630139 46 - TSS region transcription start site region 140284
Rps2-ps7 16 18681337 to 18682216 879 - pseudogene ribosomal protein S2, pseudogene 7
Cpgi8058 16 18682085 to 18682314 229 CpG island CpG island 8058
Cpgi8059 16 18686969 to 18687205 236 CpG island CpG island 8059
Gm41429 16 18696660 to 18718994 22334 + lncRNA gene predicted gene, 41429
Gm41428 16 18731715 to 18734266 2551 + lncRNA gene predicted gene, 41428
Tssr140285 16 18733151 to 18733193 42 - TSS region transcription start site region 140285
Tssr140286 16 18733222 to 18733246 24 - TSS region transcription start site region 140286
Tssr137383 16 18776100 to 18776139 39 + TSS region transcription start site region 137383
Tssr140287 16 18776648 to 18776681 33 - TSS region transcription start site region 140287
Tssr137384 16 18776839 to 18776856 17 + TSS region transcription start site region 137384
Del(16Cldn5-Hira)5Bld 16 18776847 to 18970309 193462 complex/cluster/region deletion, Chr 16, Antonio Baldini 5
Cldn5 16 18776847 to 18778262 1415 + protein coding gene claudin 5
Cpgi8060 16 18776877 to 18777955 1078 CpG island CpG island 8060
Cdc45 16 18780447 to 18811987 31540 - protein coding gene cell division cycle 45
Tssr140288 16 18784309 to 18784313 4 - TSS region transcription start site region 140288
Cpgi8061 16 18811317 to 18812701 1384 CpG island CpG island 8061
Tssr140289 16 18811584 to 18811609 25 - TSS region transcription start site region 140289
Tssr140290 16 18811615 to 18811635 20 - TSS region transcription start site region 140290
Tssr140291 16 18811638 to 18811643 5 - TSS region transcription start site region 140291
Tssr137385 16 18811772 to 18811787 15 + TSS region transcription start site region 137385
Ufd1 16 18811819 to 18835261 23442 + protein coding gene ubiquitin recognition factor in ER-associated degradation 1
Tssr140292 16 18812003 to 18812025 22 - TSS region transcription start site region 140292
Tssr137386 16 18812286 to 18812336 50 + TSS region transcription start site region 137386
D630030B22Rik 16 18829324 to 18831490 2166 unclassified gene RIKEN cDNA D630030B22 gene
9430099O15Rik 16 18831431 to 18833449 2018 unclassified gene RIKEN cDNA 9430099O15 gene
Tssr137387 16 18832176 to 18832183 7 + TSS region transcription start site region 137387
Cpgi8062 16 18836455 to 18837020 565 CpG island CpG island 8062
Tssr137388 16 18836573 to 18836583 10 + TSS region transcription start site region 137388
2510002D24Rik 16 18836580 to 18840113 3533 + protein coding gene RIKEN cDNA 2510002D24 gene
Gm28539 16 18836584 to 18956247 119663 + protein coding gene predicted gene 28539
Mrpl40 16 18872018 to 18876637 4619 - protein coding gene mitochondrial ribosomal protein L40
Cpgi8063 16 18876294 to 18877960 1666 CpG island CpG island 8063
Tssr140293 16 18876522 to 18876570 48 - TSS region transcription start site region 140293
Tssr140294 16 18876598 to 18876609 11 - TSS region transcription start site region 140294
Tssr140295 16 18876619 to 18876653 34 - TSS region transcription start site region 140295
Tssr140296 16 18876655 to 18876668 13 - TSS region transcription start site region 140296
Tssr137389 16 18876709 to 18876739 30 + TSS region transcription start site region 137389
Hira 16 18877037 to 18970309 93272 + protein coding gene histone cell cycle regulator
Tssr137390 16 18877213 to 18877241 28 + TSS region transcription start site region 137390
Tssr137391 16 18877247 to 18877275 28 + TSS region transcription start site region 137391
Tssr137392 16 18893775 to 18893777 2 + TSS region transcription start site region 137392
Gm15799 16 18937401 to 18937689 288 + pseudogene predicted gene 15799
Gm15798 16 18944258 to 18944665 407 - pseudogene predicted gene 15798
Cpgi8064 16 18976574 to 18976770 196 CpG island CpG island 8064
Gm18747 16 19018058 to 19018702 644 - pseudogene predicted gene, 18747
Igl 16 19026858 to 19260844 233986 - complex/cluster/region immunoglobulin lambda chain complex
Gm10088 16 19028232 to 19028654 422 + pseudogene predicted gene 10088
Tssr137393 16 19035889 to 19035918 29 + TSS region transcription start site region 137393
Tssr137394 16 19051332 to 19051369 37 + TSS region transcription start site region 137394
Iglc1 16 19061752 to 19062071 319 - gene segment immunoglobulin lambda constant 1
Iglj1 16 19063225 to 19063262 37 - gene segment immunoglobulin lambda joining 1
Tssr140297 16 19063238 to 19063249 11 - TSS region transcription start site region 140297
Tssr140298 16 19063266 to 19063285 19 - TSS region transcription start site region 140298
Tssr137395 16 19063294 to 19063331 37 + TSS region transcription start site region 137395
Tssr140299 16 19063465 to 19063504 39 - TSS region transcription start site region 140299
Tssr140300 16 19063521 to 19063560 39 - TSS region transcription start site region 140300
Tssr137396 16 19063587 to 19063614 27 + TSS region transcription start site region 137396
Tssr140301 16 19063590 to 19063599 9 - TSS region transcription start site region 140301
Iglc3 16 19065365 to 19065681 316 - gene segment immunoglobulin lambda constant 3