Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:17940089-18390170

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41427 16 17936110 to 17944289 8179 + lncRNA gene predicted gene, 41427
Vpreb2 16 17980428 to 17981273 845 + protein coding gene pre-B lymphocyte gene 2
Tssr137347 16 18028657 to 18028662 5 + TSS region transcription start site region 137347
Gm49580 16 18028664 to 18031868 3204 + lincRNA gene predicted gene, 49580
Tssr137348 16 18028667 to 18028696 29 + TSS region transcription start site region 137348
Tssr137349 16 18028711 to 18028713 2 + TSS region transcription start site region 137349
Cpgi8036 16 18036475 to 18036765 290 CpG island CpG island 8036
Dgcr6 16 18052860 to 18071632 18772 + protein coding gene DiGeorge syndrome critical region gene 6
Tssr137350 16 18052864 to 18052881 17 + TSS region transcription start site region 137350
Tssr137351 16 18052899 to 18052925 26 + TSS region transcription start site region 137351
Cpgi8037 16 18066081 to 18067035 954 CpG island CpG island 8037
Tssr137352 16 18066416 to 18066459 43 + TSS region transcription start site region 137352
Tssr137353 16 18066461 to 18066494 33 + TSS region transcription start site region 137353
Prodh 16 18071726 to 18089283 17557 - protein coding gene proline dehydrogenase
Tssr140227 16 18073633 to 18073655 22 - TSS region transcription start site region 140227
Tssr140228 16 18073717 to 18073741 24 - TSS region transcription start site region 140228
Cpgi8038 16 18088667 to 18089497 830 CpG island CpG island 8038
Tssr140229 16 18089153 to 18089170 17 - TSS region transcription start site region 140229
D16Mit143 16 18118096 to 18118288 192 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 143
Cpgi8039 16 18126776 to 18128782 2006 CpG island CpG island 8039
Tssr137354 16 18127376 to 18127437 61 + TSS region transcription start site region 137354
Tssr137355 16 18127607 to 18127649 42 + TSS region transcription start site region 137355
Tssr137356 16 18127655 to 18127662 7 + TSS region transcription start site region 137356
Tssr137357 16 18127669 to 18127682 13 + TSS region transcription start site region 137357
Rtn4r 16 18127706 to 18152408 24702 + protein coding gene reticulon 4 receptor
Tssr137358 16 18143514 to 18143526 12 + TSS region transcription start site region 137358
Mir6366 16 18165089 to 18165170 81 - miRNA gene microRNA 6366
Gm34679 16 18169515 to 18174463 4948 + lncRNA gene predicted gene, 34679
4933432I09Rik 16 18209686 to 18213863 4177 - lincRNA gene RIKEN cDNA 4933432I09 gene
4930483P17Rik 16 18213649 to 18215250 1601 + lincRNA gene RIKEN cDNA 4930483P17 gene
Tssr140230 16 18213866 to 18213882 16 - TSS region transcription start site region 140230
Tssr137359 16 18213942 to 18213949 7 + TSS region transcription start site region 137359
Tssr137360 16 18213951 to 18213961 10 + TSS region transcription start site region 137360
Tssr137361 16 18213967 to 18214008 41 + TSS region transcription start site region 137361
Tssr137362 16 18217873 to 18217884 11 + TSS region transcription start site region 137362
Ccdc188 16 18217879 to 18220348 2469 + protein coding gene coiled-coil domain containing 188
Tssr137363 16 18217892 to 18217900 8 + TSS region transcription start site region 137363
Zdhhc8 16 18220753 to 18235136 14383 - protein coding gene zinc finger, DHHC domain containing 8
Cpgi8040 16 18234393 to 18235803 1410 CpG island CpG island 8040
Tssr140231 16 18235074 to 18235184 110 - TSS region transcription start site region 140231
Ranbp1 16 18239979 to 18248694 8715 - protein coding gene RAN binding protein 1
Gm25777 16 18240717 to 18240842 125 - snoRNA gene predicted gene, 25777
Gm49776 16 18245215 to 18258321 13106 - protein coding gene predicted gene, 49776
Tssr140232 16 18245225 to 18245238 13 - TSS region transcription start site region 140232
Tssr140233 16 18247366 to 18247387 21 - TSS region transcription start site region 140233
Tssr140234 16 18247404 to 18247419 15 - TSS region transcription start site region 140234
Cpgi8041 16 18248012 to 18250020 2008 CpG island CpG island 8041
Tssr140235 16 18248611 to 18248692 81 - TSS region transcription start site region 140235
Tssr140236 16 18248697 to 18248709 12 - TSS region transcription start site region 140236
Tssr140237 16 18248727 to 18248744 17 - TSS region transcription start site region 140237
Trmt2a 16 18248858 to 18254772 5914 + protein coding gene TRM2 tRNA methyltransferase 2A
Tssr137364 16 18248866 to 18248919 53 + TSS region transcription start site region 137364
Tssr137365 16 18248937 to 18248948 11 + TSS region transcription start site region 137365
Tssr137366 16 18248961 to 18249041 80 + TSS region transcription start site region 137366
Tssr140238 16 18249231 to 18249253 22 - TSS region transcription start site region 140238
Dgcr8 16 18253948 to 18289246 35298 - protein coding gene DGCR8, microprocessor complex subunit
Mir1306 16 18284239 to 18284317 78 - miRNA gene microRNA 1306
Gm24572 16 18284550 to 18284637 87 - miRNA gene predicted gene, 24572
Tssr140239 16 18284951 to 18284955 4 - TSS region transcription start site region 140239
Cpgi8042 16 18288629 to 18289574 945 CpG island CpG island 8042
Tssr140240 16 18289186 to 18289196 10 - TSS region transcription start site region 140240
Tssr140241 16 18289199 to 18289260 61 - TSS region transcription start site region 140241
Tango2 16 18300825 to 18348098 47273 - protein coding gene transport and golgi organization 2
Mir185 16 18327401 to 18327465 64 - miRNA gene microRNA 185
9530053J19Rik 16 18332689 to 18334717 2028 unclassified gene RIKEN cDNA 9530053J19 gene
Cpgi8043 16 18343310 to 18344252 942 CpG island CpG island 8043
Tssr140242 16 18343882 to 18343932 50 - TSS region transcription start site region 140242
Cpgi8044 16 18347887 to 18349021 1134 CpG island CpG island 8044
Tssr140243 16 18348013 to 18348088 75 - TSS region transcription start site region 140243
Tssr137367 16 18348181 to 18348273 92 + TSS region transcription start site region 137367
Arvcf 16 18348182 to 18407076 58894 + protein coding gene armadillo repeat gene deleted in velocardiofacial syndrome
Tssr137368 16 18348341 to 18348352 11 + TSS region transcription start site region 137368
Gm26170 16 18355616 to 18355763 147 + snRNA gene predicted gene, 26170
Gm26219 16 18361436 to 18361506 70 - miRNA gene predicted gene, 26219
Tssr137369 16 18388995 to 18389043 48 + TSS region transcription start site region 137369