Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:17773657-18283662

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114 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klhl22 16 17759618 to 17793382 33764 + protein coding gene kelch-like 22
Cpgi8024 16 17796931 to 17798791 1860 CpG island CpG island 8024
Tssr137335 16 17797217 to 17797228 11 + TSS region transcription start site region 137335
Tssr137336 16 17797229 to 17797240 11 + TSS region transcription start site region 137336
Scarf2 16 17797282 to 17808293 11011 + protein coding gene scavenger receptor class F, member 2
Tssr137337 16 17797307 to 17797325 18 + TSS region transcription start site region 137337
Cpgi8025 16 17802253 to 17803863 1610 CpG island CpG island 8025
Cpgi8026 16 17804186 to 17804964 778 CpG island CpG island 8026
Cpgi8027 16 17806338 to 17808122 1784 CpG island CpG island 8027
Tssr137338 16 17807307 to 17807316 9 + TSS region transcription start site region 137338
Cpgi8028 16 17815126 to 17816354 1228 CpG island CpG island 8028
Zfp520-ps 16 17815176 to 17815863 687 - pseudogene zinc finger protein 520, pseudogene
Tssr137339 16 17832681 to 17832690 9 + TSS region transcription start site region 137339
Cpgi8029 16 17833066 to 17834576 1510 CpG island CpG island 8029
B830017H08Rik 16 17833121 to 17835008 1887 + lincRNA gene RIKEN cDNA B830017H08 gene
D16Wis1 16 17833221 to 17833468 247 DNA segment DNA segment, Chr 16, Wisconsin 1
Tssr4806 16 17833772 to 17833774 2 - TSS region transcription start site region 4806
Car15 16 17835276 to 17838186 2910 - protein coding gene carbonic anhydrase 15
Gm20518 16 17835277 to 17891671 56394 - protein coding gene predicted gene 20518
Tssr140212 16 17838126 to 17838149 23 - TSS region transcription start site region 140212
Tssr140213 16 17838173 to 17838218 45 - TSS region transcription start site region 140213
Dgcr2 16 17840355 to 17891728 51373 - protein coding gene DiGeorge syndrome critical region gene 2
Del(16Dgcr2-Arvcf)1Ais 16 17840355 to 18407076 566721 complex/cluster/region deletion, Chr 16, Arthur I Skoultchi 1
Dp(16Dgcr2-Arvcf)1Ais 16 17840355 to 18407076 566721 chromosomal duplication duplication, Chr 16, Arthur I Skoultchi 1
Del(16Dgcr2-Hira)3Aam 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Alea A Mills 3
Del(16Dgcr2-Hira)1Rak 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Raju Kucherlapati 1
Tssr140214 16 17872623 to 17872665 42 - TSS region transcription start site region 140214
Cpgi8030 16 17891001 to 17892046 1045 CpG island CpG island 8030
Tssr140215 16 17891638 to 17891700 62 - TSS region transcription start site region 140215
Tssr137340 16 17891926 to 17891935 9 + TSS region transcription start site region 137340
Tssr140216 16 17893455 to 17893480 25 - TSS region transcription start site region 140216
Tssr137341 16 17893580 to 17893609 29 + TSS region transcription start site region 137341
Tssr140217 16 17894086 to 17894106 20 - TSS region transcription start site region 140217
Tssr140218 16 17894108 to 17894115 7 - TSS region transcription start site region 140218
Tssr137342 16 17894197 to 17894232 35 + TSS region transcription start site region 137342
Tssk1 16 17894203 to 17895653 1450 + protein coding gene testis-specific serine kinase 1
Tssr137343 16 17894244 to 17894257 13 + TSS region transcription start site region 137343
Tssr137344 16 17898617 to 17898647 30 + TSS region transcription start site region 137344
Tssk2 16 17898637 to 17900024 1387 + protein coding gene testis-specific serine kinase 2
Tssr137345 16 17898648 to 17898673 25 + TSS region transcription start site region 137345
Ess2 16 17900709 to 17911348 10639 - protein coding gene ess-2 splicing factor
Cpgi8031 16 17911099 to 17911441 342 CpG island CpG island 8031
Tssr140219 16 17911303 to 17911354 51 - TSS region transcription start site region 140219
Gsc2 16 17913554 to 17915059 1505 - protein coding gene goosecoid homebox 2
Cpgi8032 16 17914140 to 17915350 1210 CpG island CpG island 8032
Cpgi8033 16 17920598 to 17920894 296 CpG island CpG island 8033
Cpgi8034 16 17921421 to 17922504 1083 CpG island CpG island 8034
Tssr140220 16 17921902 to 17921922 20 - TSS region transcription start site region 140220
Tssr140221 16 17921924 to 17921944 20 - TSS region transcription start site region 140221
Tssr137346 16 17922041 to 17922076 35 + TSS region transcription start site region 137346
AA914427 16 17922043 to 17923208 1165 + unclassified gene EST AA914427
Slc25a1 16 17925223 to 17928219 2996 - protein coding gene solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
Tssr140222 16 17925699 to 17925713 14 - TSS region transcription start site region 140222
Tssr140223 16 17925761 to 17925799 38 - TSS region transcription start site region 140223
Cpgi8035 16 17926997 to 17928732 1735 CpG island CpG island 8035
Tssr140224 16 17927829 to 17927871 42 - TSS region transcription start site region 140224
Tssr140225 16 17928018 to 17928022 4 - TSS region transcription start site region 140225
Tssr140226 16 17928136 to 17928215 79 - TSS region transcription start site region 140226
Gm41427 16 17936110 to 17944289 8179 + lncRNA gene predicted gene, 41427
Vpreb2 16 17980428 to 17981273 845 + protein coding gene pre-B lymphocyte gene 2
Tssr137347 16 18028657 to 18028662 5 + TSS region transcription start site region 137347
Gm49580 16 18028664 to 18031868 3204 + lincRNA gene predicted gene, 49580
Tssr137348 16 18028667 to 18028696 29 + TSS region transcription start site region 137348
Tssr137349 16 18028711 to 18028713 2 + TSS region transcription start site region 137349
Cpgi8036 16 18036475 to 18036765 290 CpG island CpG island 8036
Dgcr6 16 18052860 to 18071632 18772 + protein coding gene DiGeorge syndrome critical region gene 6
Tssr137350 16 18052864 to 18052881 17 + TSS region transcription start site region 137350
Tssr137351 16 18052899 to 18052925 26 + TSS region transcription start site region 137351
Cpgi8037 16 18066081 to 18067035 954 CpG island CpG island 8037
Tssr137352 16 18066416 to 18066459 43 + TSS region transcription start site region 137352
Tssr137353 16 18066461 to 18066494 33 + TSS region transcription start site region 137353
Prodh 16 18071726 to 18089283 17557 - protein coding gene proline dehydrogenase
Tssr140227 16 18073633 to 18073655 22 - TSS region transcription start site region 140227
Tssr140228 16 18073717 to 18073741 24 - TSS region transcription start site region 140228
Cpgi8038 16 18088667 to 18089497 830 CpG island CpG island 8038
Tssr140229 16 18089153 to 18089170 17 - TSS region transcription start site region 140229
D16Mit143 16 18118096 to 18118288 192 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 143
Cpgi8039 16 18126776 to 18128782 2006 CpG island CpG island 8039
Tssr137354 16 18127376 to 18127437 61 + TSS region transcription start site region 137354
Tssr137355 16 18127607 to 18127649 42 + TSS region transcription start site region 137355
Tssr137356 16 18127655 to 18127662 7 + TSS region transcription start site region 137356
Tssr137357 16 18127669 to 18127682 13 + TSS region transcription start site region 137357
Rtn4r 16 18127706 to 18152408 24702 + protein coding gene reticulon 4 receptor
Tssr137358 16 18143514 to 18143526 12 + TSS region transcription start site region 137358
Mir6366 16 18165089 to 18165170 81 - miRNA gene microRNA 6366
Gm34679 16 18169515 to 18174463 4948 + lncRNA gene predicted gene, 34679
4933432I09Rik 16 18209686 to 18213863 4177 - lincRNA gene RIKEN cDNA 4933432I09 gene
4930483P17Rik 16 18213649 to 18215250 1601 + lincRNA gene RIKEN cDNA 4930483P17 gene
Tssr140230 16 18213866 to 18213882 16 - TSS region transcription start site region 140230
Tssr137359 16 18213942 to 18213949 7 + TSS region transcription start site region 137359
Tssr137360 16 18213951 to 18213961 10 + TSS region transcription start site region 137360
Tssr137361 16 18213967 to 18214008 41 + TSS region transcription start site region 137361
Tssr137362 16 18217873 to 18217884 11 + TSS region transcription start site region 137362
Ccdc188 16 18217879 to 18220348 2469 + protein coding gene coiled-coil domain containing 188
Tssr137363 16 18217892 to 18217900 8 + TSS region transcription start site region 137363
Zdhhc8 16 18220753 to 18235136 14383 - protein coding gene zinc finger, DHHC domain containing 8
Cpgi8040 16 18234393 to 18235803 1410 CpG island CpG island 8040
Tssr140231 16 18235074 to 18235184 110 - TSS region transcription start site region 140231
Ranbp1 16 18239979 to 18248694 8715 - protein coding gene RAN binding protein 1
Gm25777 16 18240717 to 18240842 125 - snoRNA gene predicted gene, 25777
Gm49776 16 18245215 to 18258321 13106 - protein coding gene predicted gene, 49776
Tssr140232 16 18245225 to 18245238 13 - TSS region transcription start site region 140232
Tssr140233 16 18247366 to 18247387 21 - TSS region transcription start site region 140233
Tssr140234 16 18247404 to 18247419 15 - TSS region transcription start site region 140234
Cpgi8041 16 18248012 to 18250020 2008 CpG island CpG island 8041
Tssr140235 16 18248611 to 18248692 81 - TSS region transcription start site region 140235
Tssr140236 16 18248697 to 18248709 12 - TSS region transcription start site region 140236
Tssr140237 16 18248727 to 18248744 17 - TSS region transcription start site region 140237
Trmt2a 16 18248858 to 18254772 5914 + protein coding gene TRM2 tRNA methyltransferase 2A
Tssr137364 16 18248866 to 18248919 53 + TSS region transcription start site region 137364
Tssr137365 16 18248937 to 18248948 11 + TSS region transcription start site region 137365
Tssr137366 16 18248961 to 18249041 80 + TSS region transcription start site region 137366
Tssr140238 16 18249231 to 18249253 22 - TSS region transcription start site region 140238
Dgcr8 16 18253948 to 18289246 35298 - protein coding gene DGCR8, microprocessor complex subunit