Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:17366987-17572434

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pi4ka 16 17280351 to 17406314 125963 - protein coding gene phosphatidylinositol 4-kinase alpha
Gm18793 16 17400832 to 17401516 684 + pseudogene predicted gene, 18793
Cpgi8013 16 17405272 to 17406463 1191 CpG island CpG island 8013
Tssr140185 16 17405798 to 17405876 78 - TSS region transcription start site region 140185
Tssr140186 16 17405877 to 17405888 11 - TSS region transcription start site region 140186
Tssr137294 16 17405981 to 17406098 117 + TSS region transcription start site region 137294
Snap29 16 17406000 to 17430826 24826 + protein coding gene synaptosomal-associated protein 29
Tssr137295 16 17406275 to 17406289 14 + TSS region transcription start site region 137295
Eih3 16 17412079 to 70694896 53282817 QTL ethanol induced hypothermia 3
Tssr137296 16 17419275 to 17419295 20 + TSS region transcription start site region 137296
Tssr137297 16 17419335 to 17419348 13 + TSS region transcription start site region 137297
Tssr137298 16 17421296 to 17421304 8 + TSS region transcription start site region 137298
Cpgi8014 16 17451627 to 17452846 1219 CpG island CpG island 8014
Tssr137299 16 17451956 to 17451972 16 + TSS region transcription start site region 137299
Tssr137300 16 17451981 to 17452034 53 + TSS region transcription start site region 137300
Crkl 16 17451987 to 17487434 35447 + protein coding gene v-crk avian sarcoma virus CT10 oncogene homolog-like
Tssr140187 16 17467749 to 17467763 14 - TSS region transcription start site region 140187
Tssr140188 16 17467766 to 17467771 5 - TSS region transcription start site region 140188
Gm22770 16 17483083 to 17483149 66 - snRNA gene predicted gene, 22770
Cpgi8015 16 17489248 to 17490209 961 CpG island CpG island 8015
Tssr137301 16 17489600 to 17489627 27 + TSS region transcription start site region 137301
Aifm3 16 17489624 to 17507485 17861 + protein coding gene apoptosis-inducing factor, mitochondrion-associated 3
Tssr137302 16 17489639 to 17489683 44 + TSS region transcription start site region 137302
Tssr137303 16 17489691 to 17489703 12 + TSS region transcription start site region 137303
Tssr137304 16 17491420 to 17491434 14 + TSS region transcription start site region 137304
Tssr137305 16 17499687 to 17499704 17 + TSS region transcription start site region 137305
Cpgi8016 16 17508542 to 17509473 931 CpG island CpG island 8016
Lztr1 16 17508688 to 17526333 17645 + protein coding gene leucine-zipper-like transcriptional regulator, 1
Tssr140189 16 17508864 to 17508899 35 - TSS region transcription start site region 140189
Tssr137306 16 17508922 to 17508926 4 + TSS region transcription start site region 137306
Tssr137307 16 17508947 to 17509007 60 + TSS region transcription start site region 137307
Tssr137308 16 17509158 to 17509173 15 + TSS region transcription start site region 137308
Tssr137309 16 17509215 to 17509240 25 + TSS region transcription start site region 137309
Tssr137310 16 17511060 to 17511090 30 + TSS region transcription start site region 137310
Thap7 16 17527982 to 17531136 3154 - protein coding gene THAP domain containing 7
Cpgi8017 16 17530092 to 17531395 1303 CpG island CpG island 8017
Tssr140190 16 17530688 to 17530789 101 - TSS region transcription start site region 140190
Tssr140191 16 17530993 to 17531016 23 - TSS region transcription start site region 140191
Tssr140192 16 17531019 to 17531071 52 - TSS region transcription start site region 140192
Tssr140193 16 17531132 to 17531143 11 - TSS region transcription start site region 140193
Tssr137311 16 17531155 to 17531190 35 + TSS region transcription start site region 137311
Gm49785 16 17531182 to 17531518 336 + bidirectional promoter lncRNA gene predicted gene, 49785
Lrrc74b 16 17544465 to 17561247 16782 - protein coding gene leucine rich repeat containing 74B
Tssr140194 16 17554806 to 17554814 8 - TSS region transcription start site region 140194
Tssr140195 16 17561240 to 17561254 14 - TSS region transcription start site region 140195
P2rx6 16 17561855 to 17572012 10157 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 6
Tssr137312 16 17561992 to 17562042 50 + TSS region transcription start site region 137312
Slc7a4 16 17572018 to 17576893 4875 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 4