Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:17146512-17416516

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc116 16 17139064 to 17147229 8165 - protein coding gene coiled-coil domain containing 116
Cpgi8008 16 17146821 to 17148356 1535 CpG island CpG island 8008
Tssr137274 16 17146939 to 17146985 46 + TSS region transcription start site region 137274
Ydjc 16 17146950 to 17148857 1907 + protein coding gene YdjC homolog (bacterial)
Tssr140171 16 17147575 to 17147592 17 - TSS region transcription start site region 140171
Tssr140172 16 17148215 to 17148227 12 - TSS region transcription start site region 140172
Ube2l3 16 17152015 to 17201512 49497 - protein coding gene ubiquitin-conjugating enzyme E2L 3
Tssr140173 16 17153760 to 17153806 46 - TSS region transcription start site region 140173
Tssr140174 16 17166932 to 17166936 4 - TSS region transcription start site region 140174
Tssr140175 16 17175955 to 17175965 10 - TSS region transcription start site region 140175
Tssr4805 16 17181636 to 17181647 11 + TSS region transcription start site region 4805
Cpgi8009 16 17200709 to 17201650 941 CpG island CpG island 8009
Tssr137275 16 17200938 to 17200952 14 + TSS region transcription start site region 137275
Tssr140176 16 17201200 to 17201209 9 - TSS region transcription start site region 140176
Tssr140177 16 17201457 to 17201482 25 - TSS region transcription start site region 140177
Tssr140178 16 17201490 to 17201507 17 - TSS region transcription start site region 140178
Gm22129 16 17205792 to 17205898 106 - snRNA gene predicted gene, 22129
Cpgi8010 16 17208470 to 17210665 2195 CpG island CpG island 8010
Tssr137276 16 17208603 to 17208628 25 + TSS region transcription start site region 137276
Rimbp3 16 17208603 to 17213982 5379 + protein coding gene RIMS binding protein 3
Tssr137277 16 17208631 to 17208663 32 + TSS region transcription start site region 137277
Tssr137278 16 17208869 to 17208903 34 + TSS region transcription start site region 137278
Tssr140179 16 17214194 to 17214209 15 - TSS region transcription start site region 140179
Tssr137279 16 17222285 to 17222296 11 + TSS region transcription start site region 137279
Tssr137280 16 17222307 to 17222321 14 + TSS region transcription start site region 137280
Tssr137281 16 17222356 to 17222391 35 + TSS region transcription start site region 137281
Tssr140180 16 17222400 to 17222429 29 - TSS region transcription start site region 140180
Cpgi8011 16 17232955 to 17234339 1384 CpG island CpG island 8011
Tssr137282 16 17233560 to 17233590 30 + TSS region transcription start site region 137282
Hic2 16 17233587 to 17263430 29843 + protein coding gene hypermethylated in cancer 2
Gm49573 16 17233601 to 17276718 43117 + unclassified non-coding RNA gene predicted gene, 49573
Tssr137283 16 17253115 to 17253134 19 + TSS region transcription start site region 137283
Gm26635 16 17254960 to 17260326 5366 - lincRNA gene predicted gene, 26635
Tssr137284 16 17266390 to 17266393 3 + TSS region transcription start site region 137284
Cpgi8012 16 17276087 to 17278480 2393 CpG island CpG island 8012
Tssr137285 16 17276291 to 17276330 39 + TSS region transcription start site region 137285
Tmem191c 16 17276300 to 17278661 2361 + protein coding gene transmembrane protein 191C
Tssr137286 16 17276337 to 17276358 21 + TSS region transcription start site region 137286
Tssr137287 16 17276662 to 17276680 18 + TSS region transcription start site region 137287
Pi4ka 16 17280351 to 17406314 125963 - protein coding gene phosphatidylinositol 4-kinase alpha
Tssr140181 16 17281512 to 17281516 4 - TSS region transcription start site region 140181
Tssr140182 16 17288555 to 17288575 20 - TSS region transcription start site region 140182
Tssr137288 16 17303276 to 17303280 4 + TSS region transcription start site region 137288
Serpind1 16 17331371 to 17343575 12204 + protein coding gene serine (or cysteine) peptidase inhibitor, clade D, member 1
Tssr137289 16 17331374 to 17331427 53 + TSS region transcription start site region 137289
Tssr137290 16 17336237 to 17336250 13 + TSS region transcription start site region 137290
Tssr137291 16 17336259 to 17336310 51 + TSS region transcription start site region 137291
Tssr137292 16 17336469 to 17336484 15 + TSS region transcription start site region 137292
Tssr137293 16 17336545 to 17336554 9 + TSS region transcription start site region 137293
Gm24927 16 17341906 to 17342012 106 - snRNA gene predicted gene, 24927
Tssr140183 16 17346956 to 17346987 31 - TSS region transcription start site region 140183
Tssr140184 16 17356169 to 17356204 35 - TSS region transcription start site region 140184
Gm18793 16 17400832 to 17401516 684 + pseudogene predicted gene, 18793
Cpgi8013 16 17405272 to 17406463 1191 CpG island CpG island 8013
Tssr140185 16 17405798 to 17405876 78 - TSS region transcription start site region 140185
Tssr140186 16 17405877 to 17405888 11 - TSS region transcription start site region 140186
Tssr137294 16 17405981 to 17406098 117 + TSS region transcription start site region 137294
Snap29 16 17406000 to 17430826 24826 + protein coding gene synaptosomal-associated protein 29
Tssr137295 16 17406275 to 17406289 14 + TSS region transcription start site region 137295
Eih3 16 17412079 to 70694896 53282817 QTL ethanol induced hypothermia 3