Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:17048470-17370665

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700056N10Rik 16 17047520 to 17049111 1591 + lincRNA gene RIKEN cDNA 1700056N10 gene
Cpgi8003 16 17069679 to 17070495 816 CpG island CpG island 8003
Tssr137265 16 17070127 to 17070215 88 + TSS region transcription start site region 137265
Ypel1 16 17070139 to 17086736 16597 + protein coding gene yippee like 1
Tssr137266 16 17070220 to 17070239 19 + TSS region transcription start site region 137266
Tssr137267 16 17070247 to 17070254 7 + TSS region transcription start site region 137267
Tssr137268 16 17070264 to 17070275 11 + TSS region transcription start site region 137268
Tssr137269 16 17070281 to 17070320 39 + TSS region transcription start site region 137269
Tssr137270 16 17070323 to 17070336 13 + TSS region transcription start site region 137270
Tssr137271 16 17070342 to 17070345 3 + TSS region transcription start site region 137271
Gm9974 16 17081999 to 17082691 692 - pseudogene predicted gene 9974
Ppil2 16 17086555 to 17111257 24702 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 2
Gm49584 16 17092815 to 17096350 3535 + antisense lncRNA gene predicted gene, 49584
Tssr140158 16 17096985 to 17097002 17 - TSS region transcription start site region 140158
Cpgi8004 16 17110831 to 17111448 617 CpG island CpG island 8004
Tssr140159 16 17111191 to 17111196 5 - TSS region transcription start site region 140159
Tssr140160 16 17111204 to 17111255 51 - TSS region transcription start site region 140160
2610318N02Rik 16 17113398 to 17125167 11769 - protein coding gene RIKEN cDNA 2610318N02 gene
Cpgi8005 16 17121072 to 17121582 510 CpG island CpG island 8005
Tssr140161 16 17121708 to 17121711 3 - TSS region transcription start site region 140161
Tssr140162 16 17121734 to 17121767 33 - TSS region transcription start site region 140162
Tssr140163 16 17121771 to 17121795 24 - TSS region transcription start site region 140163
Mirc25 16 17124061 to 17124496 435 complex/cluster/region microRNA cluster 25, including Mir130b through Mir301b
Mir130b 16 17124061 to 17124142 81 - miRNA gene microRNA 130b
Mir301b 16 17124400 to 17124496 96 - miRNA gene microRNA 301b
Cpgi8006 16 17125027 to 17125270 243 CpG island CpG island 8006
Tssr140164 16 17125130 to 17125146 16 - TSS region transcription start site region 140164
Sdf2l1 16 17130138 to 17132383 2245 - protein coding gene stromal cell-derived factor 2-like 1
Tssr140165 16 17130276 to 17130280 4 - TSS region transcription start site region 140165
Cpgi8007 16 17131472 to 17132687 1215 CpG island CpG island 8007
Tssr140166 16 17132302 to 17132313 11 - TSS region transcription start site region 140166
Tssr140167 16 17132325 to 17132367 42 - TSS region transcription start site region 140167
Tssr140168 16 17132377 to 17132388 11 - TSS region transcription start site region 140168
Tssr137272 16 17137294 to 17137327 33 + TSS region transcription start site region 137272
Gm6440 16 17137328 to 17137681 353 + pseudogene predicted gene 6440
Ccdc116 16 17139064 to 17147229 8165 - protein coding gene coiled-coil domain containing 116
Tssr140169 16 17144391 to 17144401 10 - TSS region transcription start site region 140169
Tssr140170 16 17144415 to 17144451 36 - TSS region transcription start site region 140170
Tssr137273 16 17144600 to 17144622 22 + TSS region transcription start site region 137273
Cpgi8008 16 17146821 to 17148356 1535 CpG island CpG island 8008
Tssr137274 16 17146939 to 17146985 46 + TSS region transcription start site region 137274
Ydjc 16 17146950 to 17148857 1907 + protein coding gene YdjC homolog (bacterial)
Tssr140171 16 17147575 to 17147592 17 - TSS region transcription start site region 140171
Tssr140172 16 17148215 to 17148227 12 - TSS region transcription start site region 140172
Ube2l3 16 17152015 to 17201512 49497 - protein coding gene ubiquitin-conjugating enzyme E2L 3
Tssr140173 16 17153760 to 17153806 46 - TSS region transcription start site region 140173
Tssr140174 16 17166932 to 17166936 4 - TSS region transcription start site region 140174
Tssr140175 16 17175955 to 17175965 10 - TSS region transcription start site region 140175
Tssr4805 16 17181636 to 17181647 11 + TSS region transcription start site region 4805
Cpgi8009 16 17200709 to 17201650 941 CpG island CpG island 8009
Tssr137275 16 17200938 to 17200952 14 + TSS region transcription start site region 137275
Tssr140176 16 17201200 to 17201209 9 - TSS region transcription start site region 140176
Tssr140177 16 17201457 to 17201482 25 - TSS region transcription start site region 140177
Tssr140178 16 17201490 to 17201507 17 - TSS region transcription start site region 140178
Gm22129 16 17205792 to 17205898 106 - snRNA gene predicted gene, 22129
Cpgi8010 16 17208470 to 17210665 2195 CpG island CpG island 8010
Tssr137276 16 17208603 to 17208628 25 + TSS region transcription start site region 137276
Rimbp3 16 17208603 to 17213982 5379 + protein coding gene RIMS binding protein 3
Tssr137277 16 17208631 to 17208663 32 + TSS region transcription start site region 137277
Tssr137278 16 17208869 to 17208903 34 + TSS region transcription start site region 137278
Tssr140179 16 17214194 to 17214209 15 - TSS region transcription start site region 140179
Tssr137279 16 17222285 to 17222296 11 + TSS region transcription start site region 137279
Tssr137280 16 17222307 to 17222321 14 + TSS region transcription start site region 137280
Tssr137281 16 17222356 to 17222391 35 + TSS region transcription start site region 137281
Tssr140180 16 17222400 to 17222429 29 - TSS region transcription start site region 140180
Cpgi8011 16 17232955 to 17234339 1384 CpG island CpG island 8011
Tssr137282 16 17233560 to 17233590 30 + TSS region transcription start site region 137282
Hic2 16 17233587 to 17263430 29843 + protein coding gene hypermethylated in cancer 2
Gm49573 16 17233601 to 17276718 43117 + unclassified non-coding RNA gene predicted gene, 49573
Tssr137283 16 17253115 to 17253134 19 + TSS region transcription start site region 137283
Gm26635 16 17254960 to 17260326 5366 - lincRNA gene predicted gene, 26635
Tssr137284 16 17266390 to 17266393 3 + TSS region transcription start site region 137284
Cpgi8012 16 17276087 to 17278480 2393 CpG island CpG island 8012
Tssr137285 16 17276291 to 17276330 39 + TSS region transcription start site region 137285
Tmem191c 16 17276300 to 17278661 2361 + protein coding gene transmembrane protein 191C
Tssr137286 16 17276337 to 17276358 21 + TSS region transcription start site region 137286
Tssr137287 16 17276662 to 17276680 18 + TSS region transcription start site region 137287
Pi4ka 16 17280351 to 17406314 125963 - protein coding gene phosphatidylinositol 4-kinase alpha
Tssr140181 16 17281512 to 17281516 4 - TSS region transcription start site region 140181
Tssr140182 16 17288555 to 17288575 20 - TSS region transcription start site region 140182
Tssr137288 16 17303276 to 17303280 4 + TSS region transcription start site region 137288
Serpind1 16 17331371 to 17343575 12204 + protein coding gene serine (or cysteine) peptidase inhibitor, clade D, member 1
Tssr137289 16 17331374 to 17331427 53 + TSS region transcription start site region 137289
Tssr137290 16 17336237 to 17336250 13 + TSS region transcription start site region 137290
Tssr137291 16 17336259 to 17336310 51 + TSS region transcription start site region 137291
Tssr137292 16 17336469 to 17336484 15 + TSS region transcription start site region 137292
Tssr137293 16 17336545 to 17336554 9 + TSS region transcription start site region 137293
Gm24927 16 17341906 to 17342012 106 - snRNA gene predicted gene, 24927
Tssr140183 16 17346956 to 17346987 31 - TSS region transcription start site region 140183
Tssr140184 16 17356169 to 17356204 35 - TSS region transcription start site region 140184