Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:16999600-17979627

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260 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapk1 16 16983382 to 17047453 64071 + protein coding gene mitogen-activated protein kinase 1
Gm22558 16 17006107 to 17006201 94 - snRNA gene predicted gene, 22558
Tssr137256 16 17018384 to 17018399 15 + TSS region transcription start site region 137256
Tssr137257 16 17026353 to 17026371 18 + TSS region transcription start site region 137257
Tssr137258 16 17026410 to 17026434 24 + TSS region transcription start site region 137258
Tssr137259 16 17035583 to 17035596 13 + TSS region transcription start site region 137259
Tssr137260 16 17043697 to 17043736 39 + TSS region transcription start site region 137260
Tssr137261 16 17043961 to 17043982 21 + TSS region transcription start site region 137261
Tssr137262 16 17044203 to 17044216 13 + TSS region transcription start site region 137262
Tssr137263 16 17044539 to 17044559 20 + TSS region transcription start site region 137263
Tssr137264 16 17045105 to 17045143 38 + TSS region transcription start site region 137264
1700056N10Rik 16 17047520 to 17049111 1591 + lincRNA gene RIKEN cDNA 1700056N10 gene
Cpgi8003 16 17069679 to 17070495 816 CpG island CpG island 8003
Tssr137265 16 17070127 to 17070215 88 + TSS region transcription start site region 137265
Ypel1 16 17070139 to 17086736 16597 + protein coding gene yippee like 1
Tssr137266 16 17070220 to 17070239 19 + TSS region transcription start site region 137266
Tssr137267 16 17070247 to 17070254 7 + TSS region transcription start site region 137267
Tssr137268 16 17070264 to 17070275 11 + TSS region transcription start site region 137268
Tssr137269 16 17070281 to 17070320 39 + TSS region transcription start site region 137269
Tssr137270 16 17070323 to 17070336 13 + TSS region transcription start site region 137270
Tssr137271 16 17070342 to 17070345 3 + TSS region transcription start site region 137271
Gm9974 16 17081999 to 17082691 692 - pseudogene predicted gene 9974
Ppil2 16 17086555 to 17111257 24702 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 2
Gm49584 16 17092815 to 17096350 3535 + antisense lncRNA gene predicted gene, 49584
Tssr140158 16 17096985 to 17097002 17 - TSS region transcription start site region 140158
Cpgi8004 16 17110831 to 17111448 617 CpG island CpG island 8004
Tssr140159 16 17111191 to 17111196 5 - TSS region transcription start site region 140159
Tssr140160 16 17111204 to 17111255 51 - TSS region transcription start site region 140160
2610318N02Rik 16 17113398 to 17125167 11769 - protein coding gene RIKEN cDNA 2610318N02 gene
Cpgi8005 16 17121072 to 17121582 510 CpG island CpG island 8005
Tssr140161 16 17121708 to 17121711 3 - TSS region transcription start site region 140161
Tssr140162 16 17121734 to 17121767 33 - TSS region transcription start site region 140162
Tssr140163 16 17121771 to 17121795 24 - TSS region transcription start site region 140163
Mir130b 16 17124061 to 17124142 81 - miRNA gene microRNA 130b
Mirc25 16 17124061 to 17124496 435 complex/cluster/region microRNA cluster 25, including Mir130b through Mir301b
Mir301b 16 17124400 to 17124496 96 - miRNA gene microRNA 301b
Cpgi8006 16 17125027 to 17125270 243 CpG island CpG island 8006
Tssr140164 16 17125130 to 17125146 16 - TSS region transcription start site region 140164
Sdf2l1 16 17130138 to 17132383 2245 - protein coding gene stromal cell-derived factor 2-like 1
Tssr140165 16 17130276 to 17130280 4 - TSS region transcription start site region 140165
Cpgi8007 16 17131472 to 17132687 1215 CpG island CpG island 8007
Tssr140166 16 17132302 to 17132313 11 - TSS region transcription start site region 140166
Tssr140167 16 17132325 to 17132367 42 - TSS region transcription start site region 140167
Tssr140168 16 17132377 to 17132388 11 - TSS region transcription start site region 140168
Tssr137272 16 17137294 to 17137327 33 + TSS region transcription start site region 137272
Gm6440 16 17137328 to 17137681 353 + pseudogene predicted gene 6440
Ccdc116 16 17139064 to 17147229 8165 - protein coding gene coiled-coil domain containing 116
Tssr140169 16 17144391 to 17144401 10 - TSS region transcription start site region 140169
Tssr140170 16 17144415 to 17144451 36 - TSS region transcription start site region 140170
Tssr137273 16 17144600 to 17144622 22 + TSS region transcription start site region 137273
Cpgi8008 16 17146821 to 17148356 1535 CpG island CpG island 8008
Tssr137274 16 17146939 to 17146985 46 + TSS region transcription start site region 137274
Ydjc 16 17146950 to 17148857 1907 + protein coding gene YdjC homolog (bacterial)
Tssr140171 16 17147575 to 17147592 17 - TSS region transcription start site region 140171
Tssr140172 16 17148215 to 17148227 12 - TSS region transcription start site region 140172
Ube2l3 16 17152015 to 17201512 49497 - protein coding gene ubiquitin-conjugating enzyme E2L 3
Tssr140173 16 17153760 to 17153806 46 - TSS region transcription start site region 140173
Tssr140174 16 17166932 to 17166936 4 - TSS region transcription start site region 140174
Tssr140175 16 17175955 to 17175965 10 - TSS region transcription start site region 140175
Tssr4805 16 17181636 to 17181647 11 + TSS region transcription start site region 4805
Cpgi8009 16 17200709 to 17201650 941 CpG island CpG island 8009
Tssr137275 16 17200938 to 17200952 14 + TSS region transcription start site region 137275
Tssr140176 16 17201200 to 17201209 9 - TSS region transcription start site region 140176
Tssr140177 16 17201457 to 17201482 25 - TSS region transcription start site region 140177
Tssr140178 16 17201490 to 17201507 17 - TSS region transcription start site region 140178
Gm22129 16 17205792 to 17205898 106 - snRNA gene predicted gene, 22129
Cpgi8010 16 17208470 to 17210665 2195 CpG island CpG island 8010
Rimbp3 16 17208603 to 17213982 5379 + protein coding gene RIMS binding protein 3
Tssr137276 16 17208603 to 17208628 25 + TSS region transcription start site region 137276
Tssr137277 16 17208631 to 17208663 32 + TSS region transcription start site region 137277
Tssr137278 16 17208869 to 17208903 34 + TSS region transcription start site region 137278
Tssr140179 16 17214194 to 17214209 15 - TSS region transcription start site region 140179
Tssr137279 16 17222285 to 17222296 11 + TSS region transcription start site region 137279
Tssr137280 16 17222307 to 17222321 14 + TSS region transcription start site region 137280
Tssr137281 16 17222356 to 17222391 35 + TSS region transcription start site region 137281
Tssr140180 16 17222400 to 17222429 29 - TSS region transcription start site region 140180
Cpgi8011 16 17232955 to 17234339 1384 CpG island CpG island 8011
Tssr137282 16 17233560 to 17233590 30 + TSS region transcription start site region 137282
Hic2 16 17233587 to 17263430 29843 + protein coding gene hypermethylated in cancer 2
Gm49573 16 17233601 to 17276718 43117 + unclassified non-coding RNA gene predicted gene, 49573
Tssr137283 16 17253115 to 17253134 19 + TSS region transcription start site region 137283
Gm26635 16 17254960 to 17260326 5366 - lincRNA gene predicted gene, 26635
Tssr137284 16 17266390 to 17266393 3 + TSS region transcription start site region 137284
Cpgi8012 16 17276087 to 17278480 2393 CpG island CpG island 8012
Tssr137285 16 17276291 to 17276330 39 + TSS region transcription start site region 137285
Tmem191c 16 17276300 to 17278661 2361 + protein coding gene transmembrane protein 191C
Tssr137286 16 17276337 to 17276358 21 + TSS region transcription start site region 137286
Tssr137287 16 17276662 to 17276680 18 + TSS region transcription start site region 137287
Pi4ka 16 17280351 to 17406314 125963 - protein coding gene phosphatidylinositol 4-kinase alpha
Tssr140181 16 17281512 to 17281516 4 - TSS region transcription start site region 140181
Tssr140182 16 17288555 to 17288575 20 - TSS region transcription start site region 140182
Tssr137288 16 17303276 to 17303280 4 + TSS region transcription start site region 137288
Serpind1 16 17331371 to 17343575 12204 + protein coding gene serine (or cysteine) peptidase inhibitor, clade D, member 1
Tssr137289 16 17331374 to 17331427 53 + TSS region transcription start site region 137289
Tssr137290 16 17336237 to 17336250 13 + TSS region transcription start site region 137290
Tssr137291 16 17336259 to 17336310 51 + TSS region transcription start site region 137291
Tssr137292 16 17336469 to 17336484 15 + TSS region transcription start site region 137292
Tssr137293 16 17336545 to 17336554 9 + TSS region transcription start site region 137293
Gm24927 16 17341906 to 17342012 106 - snRNA gene predicted gene, 24927
Tssr140183 16 17346956 to 17346987 31 - TSS region transcription start site region 140183
Tssr140184 16 17356169 to 17356204 35 - TSS region transcription start site region 140184
Gm18793 16 17400832 to 17401516 684 + pseudogene predicted gene, 18793
Cpgi8013 16 17405272 to 17406463 1191 CpG island CpG island 8013
Tssr140185 16 17405798 to 17405876 78 - TSS region transcription start site region 140185
Tssr140186 16 17405877 to 17405888 11 - TSS region transcription start site region 140186
Tssr137294 16 17405981 to 17406098 117 + TSS region transcription start site region 137294
Snap29 16 17406000 to 17430826 24826 + protein coding gene synaptosomal-associated protein 29
Tssr137295 16 17406275 to 17406289 14 + TSS region transcription start site region 137295
Eih3 16 17412079 to 70694896 53282817 QTL ethanol induced hypothermia 3
Tssr137296 16 17419275 to 17419295 20 + TSS region transcription start site region 137296
Tssr137297 16 17419335 to 17419348 13 + TSS region transcription start site region 137297
Tssr137298 16 17421296 to 17421304 8 + TSS region transcription start site region 137298
Cpgi8014 16 17451627 to 17452846 1219 CpG island CpG island 8014
Tssr137299 16 17451956 to 17451972 16 + TSS region transcription start site region 137299
Tssr137300 16 17451981 to 17452034 53 + TSS region transcription start site region 137300
Crkl 16 17451987 to 17487434 35447 + protein coding gene v-crk avian sarcoma virus CT10 oncogene homolog-like
Tssr140187 16 17467749 to 17467763 14 - TSS region transcription start site region 140187
Tssr140188 16 17467766 to 17467771 5 - TSS region transcription start site region 140188
Gm22770 16 17483083 to 17483149 66 - snRNA gene predicted gene, 22770
Cpgi8015 16 17489248 to 17490209 961 CpG island CpG island 8015
Tssr137301 16 17489600 to 17489627 27 + TSS region transcription start site region 137301
Aifm3 16 17489624 to 17507485 17861 + protein coding gene apoptosis-inducing factor, mitochondrion-associated 3
Tssr137302 16 17489639 to 17489683 44 + TSS region transcription start site region 137302
Tssr137303 16 17489691 to 17489703 12 + TSS region transcription start site region 137303
Tssr137304 16 17491420 to 17491434 14 + TSS region transcription start site region 137304
Tssr137305 16 17499687 to 17499704 17 + TSS region transcription start site region 137305
Cpgi8016 16 17508542 to 17509473 931 CpG island CpG island 8016
Lztr1 16 17508688 to 17526333 17645 + protein coding gene leucine-zipper-like transcriptional regulator, 1
Tssr140189 16 17508864 to 17508899 35 - TSS region transcription start site region 140189
Tssr137306 16 17508922 to 17508926 4 + TSS region transcription start site region 137306
Tssr137307 16 17508947 to 17509007 60 + TSS region transcription start site region 137307
Tssr137308 16 17509158 to 17509173 15 + TSS region transcription start site region 137308
Tssr137309 16 17509215 to 17509240 25 + TSS region transcription start site region 137309
Tssr137310 16 17511060 to 17511090 30 + TSS region transcription start site region 137310
Thap7 16 17527982 to 17531136 3154 - protein coding gene THAP domain containing 7
Cpgi8017 16 17530092 to 17531395 1303 CpG island CpG island 8017
Tssr140190 16 17530688 to 17530789 101 - TSS region transcription start site region 140190
Tssr140191 16 17530993 to 17531016 23 - TSS region transcription start site region 140191
Tssr140192 16 17531019 to 17531071 52 - TSS region transcription start site region 140192
Tssr140193 16 17531132 to 17531143 11 - TSS region transcription start site region 140193
Tssr137311 16 17531155 to 17531190 35 + TSS region transcription start site region 137311
Gm49785 16 17531182 to 17531518 336 + bidirectional promoter lncRNA gene predicted gene, 49785
Lrrc74b 16 17544465 to 17561247 16782 - protein coding gene leucine rich repeat containing 74B
Tssr140194 16 17554806 to 17554814 8 - TSS region transcription start site region 140194
Tssr140195 16 17561240 to 17561254 14 - TSS region transcription start site region 140195
P2rx6 16 17561855 to 17572012 10157 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 6
Tssr137312 16 17561992 to 17562042 50 + TSS region transcription start site region 137312
Slc7a4 16 17572018 to 17576893 4875 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
Tssr140196 16 17576169 to 17576183 14 - TSS region transcription start site region 140196
Tssr140197 16 17576216 to 17576237 21 - TSS region transcription start site region 140197
Cpgi8018 16 17576275 to 17576969 694 CpG island CpG island 8018
Tssr140198 16 17576661 to 17576698 37 - TSS region transcription start site region 140198
Tssr137313 16 17581186 to 17581188 2 + TSS region transcription start site region 137313
Cpgi8019 16 17619275 to 17620144 869 CpG island CpG island 8019
Tssr137314 16 17619341 to 17619387 46 + TSS region transcription start site region 137314
Smpd4 16 17619354 to 17644828 25474 + protein coding gene sphingomyelin phosphodiesterase 4
Tssr137315 16 17619443 to 17619450 7 + TSS region transcription start site region 137315
Tssr137316 16 17619470 to 17619479 9 + TSS region transcription start site region 137316
Tssr137317 16 17619489 to 17619498 9 + TSS region transcription start site region 137317
Tssr137318 16 17619503 to 17619514 11 + TSS region transcription start site region 137318
Tssr137319 16 17619530 to 17619548 18 + TSS region transcription start site region 137319
Tssr137320 16 17640874 to 17640923 49 + TSS region transcription start site region 137320
Cpgi8020 16 17646031 to 17646991 960 CpG island CpG island 8020
Tssr137321 16 17646446 to 17646458 12 + TSS region transcription start site region 137321
Tssr137322 16 17646464 to 17646507 43 + TSS region transcription start site region 137322
Ccdc74a 16 17646470 to 17650738 4268 + protein coding gene coiled-coil domain containing 74A
Tssr137323 16 17646513 to 17646530 17 + TSS region transcription start site region 137323
Tssr137324 16 17646592 to 17646620 28 + TSS region transcription start site region 137324
Tssr137325 16 17646703 to 17646709 6 + TSS region transcription start site region 137325
Med15 16 17651208 to 17722947 71739 - protein coding gene mediator complex subunit 15
Tssr140199 16 17654679 to 17654686 7 - TSS region transcription start site region 140199
Tssr140200 16 17655553 to 17655580 27 - TSS region transcription start site region 140200
Tssr140201 16 17663443 to 17663475 32 - TSS region transcription start site region 140201
Tssr140202 16 17673185 to 17673284 99 - TSS region transcription start site region 140202
Tssr140203 16 17673312 to 17673335 23 - TSS region transcription start site region 140203
Tssr140204 16 17680612 to 17680631 19 - TSS region transcription start site region 140204
Tssr140205 16 17691627 to 17691631 4 - TSS region transcription start site region 140205
Gm18335 16 17702935 to 17703591 656 + pseudogene predicted gene, 18335
Gm49684 16 17704343 to 17705100 757 + pseudogene predicted gene, 49684
Tssr140206 16 17704388 to 17704399 11 - TSS region transcription start site region 140206
Tssr140207 16 17704400 to 17704409 9 - TSS region transcription start site region 140207
Tssr137326 16 17704584 to 17704600 16 + TSS region transcription start site region 137326
Tssr137327 16 17711623 to 17711651 28 + TSS region transcription start site region 137327
Rpl26-ps4 16 17711668 to 17712105 437 + pseudogene ribosomal protein L26, pseudogene 4
Gm49683 16 17714861 to 17715139 278 + pseudogene predicted gene, 49683
Tssr140208 16 17722452 to 17722466 14 - TSS region transcription start site region 140208
Tssr140209 16 17722468 to 17722508 40 - TSS region transcription start site region 140209
Cpgi8021 16 17722471 to 17723011 540 CpG island CpG island 8021
Tssr137328 16 17722554 to 17722600 46 + TSS region transcription start site region 137328
Tssr140210 16 17722879 to 17722936 57 - TSS region transcription start site region 140210
Tssr140211 16 17722941 to 17722954 13 - TSS region transcription start site region 140211
Gm6048 16 17725376 to 17725685 309 + pseudogene predicted gene 6048
Cpgi8022 16 17734019 to 17734441 422 CpG island CpG island 8022
Bod1-ps 16 17734169 to 17734686 517 + pseudogene biorientation of chromosomes in cell division 1, pseudogene
Tssr137329 16 17759164 to 17759171 7 + TSS region transcription start site region 137329
Cpgi8023 16 17759236 to 17760454 1218 CpG island CpG island 8023
Tssr137330 16 17759578 to 17759587 9 + TSS region transcription start site region 137330
Tssr137331 16 17759601 to 17759610 9 + TSS region transcription start site region 137331
Klhl22 16 17759618 to 17793382 33764 + protein coding gene kelch-like 22
Tssr137332 16 17759630 to 17759683 53 + TSS region transcription start site region 137332