Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:16873961-17213982

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Top3b 16 16870736 to 16892990 22254 + protein coding gene topoisomerase (DNA) III beta
Cpgi8001 16 16896313 to 16896789 476 CpG island CpG island 8001
Ppm1f 16 16896469 to 16927364 30895 + protein coding gene protein phosphatase 1F (PP2C domain containing)
Tssr137251 16 16896556 to 16896598 42 + TSS region transcription start site region 137251
Gm49595 16 16909431 to 16911716 2285 - antisense lncRNA gene predicted gene, 49595
D16Mit74.1 16 16932538 to 16932647 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74.1
D16Mit74 16 16932693 to 16932807 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74
Gm46540 16 16932861 to 16933095 234 + pseudogene predicted gene, 46540
Gm6438 16 16968609 to 16969068 459 + pseudogene predicted gene 6438
Cpgi8002 16 16983043 to 16984086 1043 CpG island CpG island 8002
Mapk1 16 16983382 to 17047453 64071 + protein coding gene mitogen-activated protein kinase 1
Tssr137252 16 16983395 to 16983416 21 + TSS region transcription start site region 137252
Tssr137253 16 16983417 to 16983428 11 + TSS region transcription start site region 137253
Tssr137254 16 16983435 to 16983442 7 + TSS region transcription start site region 137254
Tssr137255 16 16983454 to 16983461 7 + TSS region transcription start site region 137255
Gm22558 16 17006107 to 17006201 94 - snRNA gene predicted gene, 22558
Tssr137256 16 17018384 to 17018399 15 + TSS region transcription start site region 137256
Tssr137257 16 17026353 to 17026371 18 + TSS region transcription start site region 137257
Tssr137258 16 17026410 to 17026434 24 + TSS region transcription start site region 137258
Tssr137259 16 17035583 to 17035596 13 + TSS region transcription start site region 137259
Tssr137260 16 17043697 to 17043736 39 + TSS region transcription start site region 137260
Tssr137261 16 17043961 to 17043982 21 + TSS region transcription start site region 137261
Tssr137262 16 17044203 to 17044216 13 + TSS region transcription start site region 137262
Tssr137263 16 17044539 to 17044559 20 + TSS region transcription start site region 137263
Tssr137264 16 17045105 to 17045143 38 + TSS region transcription start site region 137264
1700056N10Rik 16 17047520 to 17049111 1591 + lincRNA gene RIKEN cDNA 1700056N10 gene
Cpgi8003 16 17069679 to 17070495 816 CpG island CpG island 8003
Tssr137265 16 17070127 to 17070215 88 + TSS region transcription start site region 137265
Ypel1 16 17070139 to 17086736 16597 + protein coding gene yippee like 1
Tssr137266 16 17070220 to 17070239 19 + TSS region transcription start site region 137266
Tssr137267 16 17070247 to 17070254 7 + TSS region transcription start site region 137267
Tssr137268 16 17070264 to 17070275 11 + TSS region transcription start site region 137268
Tssr137269 16 17070281 to 17070320 39 + TSS region transcription start site region 137269
Tssr137270 16 17070323 to 17070336 13 + TSS region transcription start site region 137270
Tssr137271 16 17070342 to 17070345 3 + TSS region transcription start site region 137271
Gm9974 16 17081999 to 17082691 692 - pseudogene predicted gene 9974
Ppil2 16 17086555 to 17111257 24702 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 2
Gm49584 16 17092815 to 17096350 3535 + antisense lncRNA gene predicted gene, 49584
Tssr140158 16 17096985 to 17097002 17 - TSS region transcription start site region 140158
Cpgi8004 16 17110831 to 17111448 617 CpG island CpG island 8004
Tssr140159 16 17111191 to 17111196 5 - TSS region transcription start site region 140159
Tssr140160 16 17111204 to 17111255 51 - TSS region transcription start site region 140160
2610318N02Rik 16 17113398 to 17125167 11769 - protein coding gene RIKEN cDNA 2610318N02 gene
Cpgi8005 16 17121072 to 17121582 510 CpG island CpG island 8005
Tssr140161 16 17121708 to 17121711 3 - TSS region transcription start site region 140161
Tssr140162 16 17121734 to 17121767 33 - TSS region transcription start site region 140162
Tssr140163 16 17121771 to 17121795 24 - TSS region transcription start site region 140163
Mir130b 16 17124061 to 17124142 81 - miRNA gene microRNA 130b
Mirc25 16 17124061 to 17124496 435 complex/cluster/region microRNA cluster 25, including Mir130b through Mir301b
Mir301b 16 17124400 to 17124496 96 - miRNA gene microRNA 301b
Cpgi8006 16 17125027 to 17125270 243 CpG island CpG island 8006
Tssr140164 16 17125130 to 17125146 16 - TSS region transcription start site region 140164
Sdf2l1 16 17130138 to 17132383 2245 - protein coding gene stromal cell-derived factor 2-like 1
Tssr140165 16 17130276 to 17130280 4 - TSS region transcription start site region 140165
Cpgi8007 16 17131472 to 17132687 1215 CpG island CpG island 8007
Tssr140166 16 17132302 to 17132313 11 - TSS region transcription start site region 140166
Tssr140167 16 17132325 to 17132367 42 - TSS region transcription start site region 140167
Tssr140168 16 17132377 to 17132388 11 - TSS region transcription start site region 140168
Tssr137272 16 17137294 to 17137327 33 + TSS region transcription start site region 137272
Gm6440 16 17137328 to 17137681 353 + pseudogene predicted gene 6440
Ccdc116 16 17139064 to 17147229 8165 - protein coding gene coiled-coil domain containing 116
Tssr140169 16 17144391 to 17144401 10 - TSS region transcription start site region 140169
Tssr140170 16 17144415 to 17144451 36 - TSS region transcription start site region 140170
Tssr137273 16 17144600 to 17144622 22 + TSS region transcription start site region 137273
Cpgi8008 16 17146821 to 17148356 1535 CpG island CpG island 8008
Tssr137274 16 17146939 to 17146985 46 + TSS region transcription start site region 137274
Ydjc 16 17146950 to 17148857 1907 + protein coding gene YdjC homolog (bacterial)
Tssr140171 16 17147575 to 17147592 17 - TSS region transcription start site region 140171
Tssr140172 16 17148215 to 17148227 12 - TSS region transcription start site region 140172
Ube2l3 16 17152015 to 17201512 49497 - protein coding gene ubiquitin-conjugating enzyme E2L 3
Tssr140173 16 17153760 to 17153806 46 - TSS region transcription start site region 140173
Tssr140174 16 17166932 to 17166936 4 - TSS region transcription start site region 140174
Tssr140175 16 17175955 to 17175965 10 - TSS region transcription start site region 140175
Tssr4805 16 17181636 to 17181647 11 + TSS region transcription start site region 4805
Cpgi8009 16 17200709 to 17201650 941 CpG island CpG island 8009
Tssr137275 16 17200938 to 17200952 14 + TSS region transcription start site region 137275
Tssr140176 16 17201200 to 17201209 9 - TSS region transcription start site region 140176
Tssr140177 16 17201457 to 17201482 25 - TSS region transcription start site region 140177
Tssr140178 16 17201490 to 17201507 17 - TSS region transcription start site region 140178
Gm22129 16 17205792 to 17205898 106 - snRNA gene predicted gene, 22129
Cpgi8010 16 17208470 to 17210665 2195 CpG island CpG island 8010
Tssr137276 16 17208603 to 17208628 25 + TSS region transcription start site region 137276
Rimbp3 16 17208603 to 17213982 5379 + protein coding gene RIMS binding protein 3
Tssr137277 16 17208631 to 17208663 32 + TSS region transcription start site region 137277
Tssr137278 16 17208869 to 17208903 34 + TSS region transcription start site region 137278