Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:16791906-17892012

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270 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spag6l 16 16753016 to 16829456 76440 - protein coding gene sperm associated antigen 6-like
Rpl31-ps12 16 16819749 to 16820123 374 - pseudogene ribosomal protein L31, pseudogene 1 2
Cpgi7999 16 16828920 to 16829496 576 CpG island CpG island 7999
Tssr140151 16 16829243 to 16829253 10 - TSS region transcription start site region 140151
Tssr140152 16 16829258 to 16829261 3 - TSS region transcription start site region 140152
Tssr140153 16 16829276 to 16829349 73 - TSS region transcription start site region 140153
Gm49644 16 16848851 to 16849698 847 - pseudogene predicted gene, 49644
Tssr4803 16 16852297 to 16852312 15 + TSS region transcription start site region 4803
Gm5768 16 16852315 to 16853857 1542 + pseudogene predicted gene 5768
n-TKctt3 16 16854264 to 16854336 72 + tRNA gene nuclear encoded tRNA lysine 3 (anticodon CTT)
Igll1 16 16860671 to 16863985 3314 - protein coding gene immunoglobulin lambda-like polypeptide 1
Tssr140154 16 16863874 to 16863885 11 - TSS region transcription start site region 140154
Tssr140155 16 16863938 to 16863955 17 - TSS region transcription start site region 140155
Tssr140156 16 16863975 to 16864006 31 - TSS region transcription start site region 140156
Tssr140157 16 16865939 to 16865947 8 - TSS region transcription start site region 140157
Vpreb1 16 16868401 to 16869255 854 - protein coding gene pre-B lymphocyte gene 1
Tssr4804 16 16869259 to 16869283 24 - TSS region transcription start site region 4804
Cpgi8000 16 16870590 to 16871390 800 CpG island CpG island 8000
Tssr137244 16 16870707 to 16870718 11 + TSS region transcription start site region 137244
Tssr137245 16 16870727 to 16870736 9 + TSS region transcription start site region 137245
Top3b 16 16870736 to 16892990 22254 + protein coding gene topoisomerase (DNA) III beta
Tssr137246 16 16870742 to 16870816 74 + TSS region transcription start site region 137246
Tssr137247 16 16870829 to 16870844 15 + TSS region transcription start site region 137247
Tssr137248 16 16870864 to 16870908 44 + TSS region transcription start site region 137248
Tssr137249 16 16870955 to 16870969 14 + TSS region transcription start site region 137249
Tssr137250 16 16870994 to 16870997 3 + TSS region transcription start site region 137250
Cpgi8001 16 16896313 to 16896789 476 CpG island CpG island 8001
Ppm1f 16 16896469 to 16927364 30895 + protein coding gene protein phosphatase 1F (PP2C domain containing)
Tssr137251 16 16896556 to 16896598 42 + TSS region transcription start site region 137251
Gm49595 16 16909431 to 16911716 2285 - antisense lncRNA gene predicted gene, 49595
D16Mit74.1 16 16932538 to 16932647 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74.1
D16Mit74 16 16932693 to 16932807 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74
Gm46540 16 16932861 to 16933095 234 + pseudogene predicted gene, 46540
Gm6438 16 16968609 to 16969068 459 + pseudogene predicted gene 6438
Cpgi8002 16 16983043 to 16984086 1043 CpG island CpG island 8002
Mapk1 16 16983382 to 17047453 64071 + protein coding gene mitogen-activated protein kinase 1
Tssr137252 16 16983395 to 16983416 21 + TSS region transcription start site region 137252
Tssr137253 16 16983417 to 16983428 11 + TSS region transcription start site region 137253
Tssr137254 16 16983435 to 16983442 7 + TSS region transcription start site region 137254
Tssr137255 16 16983454 to 16983461 7 + TSS region transcription start site region 137255
Gm22558 16 17006107 to 17006201 94 - snRNA gene predicted gene, 22558
Tssr137256 16 17018384 to 17018399 15 + TSS region transcription start site region 137256
Tssr137257 16 17026353 to 17026371 18 + TSS region transcription start site region 137257
Tssr137258 16 17026410 to 17026434 24 + TSS region transcription start site region 137258
Tssr137259 16 17035583 to 17035596 13 + TSS region transcription start site region 137259
Tssr137260 16 17043697 to 17043736 39 + TSS region transcription start site region 137260
Tssr137261 16 17043961 to 17043982 21 + TSS region transcription start site region 137261
Tssr137262 16 17044203 to 17044216 13 + TSS region transcription start site region 137262
Tssr137263 16 17044539 to 17044559 20 + TSS region transcription start site region 137263
Tssr137264 16 17045105 to 17045143 38 + TSS region transcription start site region 137264
1700056N10Rik 16 17047520 to 17049111 1591 + lincRNA gene RIKEN cDNA 1700056N10 gene
Cpgi8003 16 17069679 to 17070495 816 CpG island CpG island 8003
Tssr137265 16 17070127 to 17070215 88 + TSS region transcription start site region 137265
Ypel1 16 17070139 to 17086736 16597 + protein coding gene yippee like 1
Tssr137266 16 17070220 to 17070239 19 + TSS region transcription start site region 137266
Tssr137267 16 17070247 to 17070254 7 + TSS region transcription start site region 137267
Tssr137268 16 17070264 to 17070275 11 + TSS region transcription start site region 137268
Tssr137269 16 17070281 to 17070320 39 + TSS region transcription start site region 137269
Tssr137270 16 17070323 to 17070336 13 + TSS region transcription start site region 137270
Tssr137271 16 17070342 to 17070345 3 + TSS region transcription start site region 137271
Gm9974 16 17081999 to 17082691 692 - pseudogene predicted gene 9974
Ppil2 16 17086555 to 17111257 24702 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 2
Gm49584 16 17092815 to 17096350 3535 + antisense lncRNA gene predicted gene, 49584
Tssr140158 16 17096985 to 17097002 17 - TSS region transcription start site region 140158
Cpgi8004 16 17110831 to 17111448 617 CpG island CpG island 8004
Tssr140159 16 17111191 to 17111196 5 - TSS region transcription start site region 140159
Tssr140160 16 17111204 to 17111255 51 - TSS region transcription start site region 140160
2610318N02Rik 16 17113398 to 17125167 11769 - protein coding gene RIKEN cDNA 2610318N02 gene
Cpgi8005 16 17121072 to 17121582 510 CpG island CpG island 8005
Tssr140161 16 17121708 to 17121711 3 - TSS region transcription start site region 140161
Tssr140162 16 17121734 to 17121767 33 - TSS region transcription start site region 140162
Tssr140163 16 17121771 to 17121795 24 - TSS region transcription start site region 140163
Mirc25 16 17124061 to 17124496 435 complex/cluster/region microRNA cluster 25, including Mir130b through Mir301b
Mir130b 16 17124061 to 17124142 81 - miRNA gene microRNA 130b
Mir301b 16 17124400 to 17124496 96 - miRNA gene microRNA 301b
Cpgi8006 16 17125027 to 17125270 243 CpG island CpG island 8006
Tssr140164 16 17125130 to 17125146 16 - TSS region transcription start site region 140164
Sdf2l1 16 17130138 to 17132383 2245 - protein coding gene stromal cell-derived factor 2-like 1
Tssr140165 16 17130276 to 17130280 4 - TSS region transcription start site region 140165
Cpgi8007 16 17131472 to 17132687 1215 CpG island CpG island 8007
Tssr140166 16 17132302 to 17132313 11 - TSS region transcription start site region 140166
Tssr140167 16 17132325 to 17132367 42 - TSS region transcription start site region 140167
Tssr140168 16 17132377 to 17132388 11 - TSS region transcription start site region 140168
Tssr137272 16 17137294 to 17137327 33 + TSS region transcription start site region 137272
Gm6440 16 17137328 to 17137681 353 + pseudogene predicted gene 6440
Ccdc116 16 17139064 to 17147229 8165 - protein coding gene coiled-coil domain containing 116
Tssr140169 16 17144391 to 17144401 10 - TSS region transcription start site region 140169
Tssr140170 16 17144415 to 17144451 36 - TSS region transcription start site region 140170
Tssr137273 16 17144600 to 17144622 22 + TSS region transcription start site region 137273
Cpgi8008 16 17146821 to 17148356 1535 CpG island CpG island 8008
Tssr137274 16 17146939 to 17146985 46 + TSS region transcription start site region 137274
Ydjc 16 17146950 to 17148857 1907 + protein coding gene YdjC homolog (bacterial)
Tssr140171 16 17147575 to 17147592 17 - TSS region transcription start site region 140171
Tssr140172 16 17148215 to 17148227 12 - TSS region transcription start site region 140172
Ube2l3 16 17152015 to 17201512 49497 - protein coding gene ubiquitin-conjugating enzyme E2L 3
Tssr140173 16 17153760 to 17153806 46 - TSS region transcription start site region 140173
Tssr140174 16 17166932 to 17166936 4 - TSS region transcription start site region 140174
Tssr140175 16 17175955 to 17175965 10 - TSS region transcription start site region 140175
Tssr4805 16 17181636 to 17181647 11 + TSS region transcription start site region 4805
Cpgi8009 16 17200709 to 17201650 941 CpG island CpG island 8009
Tssr137275 16 17200938 to 17200952 14 + TSS region transcription start site region 137275
Tssr140176 16 17201200 to 17201209 9 - TSS region transcription start site region 140176
Tssr140177 16 17201457 to 17201482 25 - TSS region transcription start site region 140177
Tssr140178 16 17201490 to 17201507 17 - TSS region transcription start site region 140178
Gm22129 16 17205792 to 17205898 106 - snRNA gene predicted gene, 22129
Cpgi8010 16 17208470 to 17210665 2195 CpG island CpG island 8010
Tssr137276 16 17208603 to 17208628 25 + TSS region transcription start site region 137276
Rimbp3 16 17208603 to 17213982 5379 + protein coding gene RIMS binding protein 3
Tssr137277 16 17208631 to 17208663 32 + TSS region transcription start site region 137277
Tssr137278 16 17208869 to 17208903 34 + TSS region transcription start site region 137278
Tssr140179 16 17214194 to 17214209 15 - TSS region transcription start site region 140179
Tssr137279 16 17222285 to 17222296 11 + TSS region transcription start site region 137279
Tssr137280 16 17222307 to 17222321 14 + TSS region transcription start site region 137280
Tssr137281 16 17222356 to 17222391 35 + TSS region transcription start site region 137281
Tssr140180 16 17222400 to 17222429 29 - TSS region transcription start site region 140180
Cpgi8011 16 17232955 to 17234339 1384 CpG island CpG island 8011
Tssr137282 16 17233560 to 17233590 30 + TSS region transcription start site region 137282
Hic2 16 17233587 to 17263430 29843 + protein coding gene hypermethylated in cancer 2
Gm49573 16 17233601 to 17276718 43117 + unclassified non-coding RNA gene predicted gene, 49573
Tssr137283 16 17253115 to 17253134 19 + TSS region transcription start site region 137283
Gm26635 16 17254960 to 17260326 5366 - lincRNA gene predicted gene, 26635
Tssr137284 16 17266390 to 17266393 3 + TSS region transcription start site region 137284
Cpgi8012 16 17276087 to 17278480 2393 CpG island CpG island 8012
Tssr137285 16 17276291 to 17276330 39 + TSS region transcription start site region 137285
Tmem191c 16 17276300 to 17278661 2361 + protein coding gene transmembrane protein 191C
Tssr137286 16 17276337 to 17276358 21 + TSS region transcription start site region 137286
Tssr137287 16 17276662 to 17276680 18 + TSS region transcription start site region 137287
Pi4ka 16 17280351 to 17406314 125963 - protein coding gene phosphatidylinositol 4-kinase alpha
Tssr140181 16 17281512 to 17281516 4 - TSS region transcription start site region 140181
Tssr140182 16 17288555 to 17288575 20 - TSS region transcription start site region 140182
Tssr137288 16 17303276 to 17303280 4 + TSS region transcription start site region 137288
Serpind1 16 17331371 to 17343575 12204 + protein coding gene serine (or cysteine) peptidase inhibitor, clade D, member 1
Tssr137289 16 17331374 to 17331427 53 + TSS region transcription start site region 137289
Tssr137290 16 17336237 to 17336250 13 + TSS region transcription start site region 137290
Tssr137291 16 17336259 to 17336310 51 + TSS region transcription start site region 137291
Tssr137292 16 17336469 to 17336484 15 + TSS region transcription start site region 137292
Tssr137293 16 17336545 to 17336554 9 + TSS region transcription start site region 137293
Gm24927 16 17341906 to 17342012 106 - snRNA gene predicted gene, 24927
Tssr140183 16 17346956 to 17346987 31 - TSS region transcription start site region 140183
Tssr140184 16 17356169 to 17356204 35 - TSS region transcription start site region 140184
Gm18793 16 17400832 to 17401516 684 + pseudogene predicted gene, 18793
Cpgi8013 16 17405272 to 17406463 1191 CpG island CpG island 8013
Tssr140185 16 17405798 to 17405876 78 - TSS region transcription start site region 140185
Tssr140186 16 17405877 to 17405888 11 - TSS region transcription start site region 140186
Tssr137294 16 17405981 to 17406098 117 + TSS region transcription start site region 137294
Snap29 16 17406000 to 17430826 24826 + protein coding gene synaptosomal-associated protein 29
Tssr137295 16 17406275 to 17406289 14 + TSS region transcription start site region 137295
Eih3 16 17412079 to 70694896 53282817 QTL ethanol induced hypothermia 3
Tssr137296 16 17419275 to 17419295 20 + TSS region transcription start site region 137296
Tssr137297 16 17419335 to 17419348 13 + TSS region transcription start site region 137297
Tssr137298 16 17421296 to 17421304 8 + TSS region transcription start site region 137298
Cpgi8014 16 17451627 to 17452846 1219 CpG island CpG island 8014
Tssr137299 16 17451956 to 17451972 16 + TSS region transcription start site region 137299
Tssr137300 16 17451981 to 17452034 53 + TSS region transcription start site region 137300
Crkl 16 17451987 to 17487434 35447 + protein coding gene v-crk avian sarcoma virus CT10 oncogene homolog-like
Tssr140187 16 17467749 to 17467763 14 - TSS region transcription start site region 140187
Tssr140188 16 17467766 to 17467771 5 - TSS region transcription start site region 140188
Gm22770 16 17483083 to 17483149 66 - snRNA gene predicted gene, 22770
Cpgi8015 16 17489248 to 17490209 961 CpG island CpG island 8015
Tssr137301 16 17489600 to 17489627 27 + TSS region transcription start site region 137301
Aifm3 16 17489624 to 17507485 17861 + protein coding gene apoptosis-inducing factor, mitochondrion-associated 3
Tssr137302 16 17489639 to 17489683 44 + TSS region transcription start site region 137302
Tssr137303 16 17489691 to 17489703 12 + TSS region transcription start site region 137303
Tssr137304 16 17491420 to 17491434 14 + TSS region transcription start site region 137304
Tssr137305 16 17499687 to 17499704 17 + TSS region transcription start site region 137305
Cpgi8016 16 17508542 to 17509473 931 CpG island CpG island 8016
Lztr1 16 17508688 to 17526333 17645 + protein coding gene leucine-zipper-like transcriptional regulator, 1
Tssr140189 16 17508864 to 17508899 35 - TSS region transcription start site region 140189
Tssr137306 16 17508922 to 17508926 4 + TSS region transcription start site region 137306
Tssr137307 16 17508947 to 17509007 60 + TSS region transcription start site region 137307
Tssr137308 16 17509158 to 17509173 15 + TSS region transcription start site region 137308
Tssr137309 16 17509215 to 17509240 25 + TSS region transcription start site region 137309
Tssr137310 16 17511060 to 17511090 30 + TSS region transcription start site region 137310
Thap7 16 17527982 to 17531136 3154 - protein coding gene THAP domain containing 7
Cpgi8017 16 17530092 to 17531395 1303 CpG island CpG island 8017
Tssr140190 16 17530688 to 17530789 101 - TSS region transcription start site region 140190
Tssr140191 16 17530993 to 17531016 23 - TSS region transcription start site region 140191
Tssr140192 16 17531019 to 17531071 52 - TSS region transcription start site region 140192
Tssr140193 16 17531132 to 17531143 11 - TSS region transcription start site region 140193
Tssr137311 16 17531155 to 17531190 35 + TSS region transcription start site region 137311
Gm49785 16 17531182 to 17531518 336 + bidirectional promoter lncRNA gene predicted gene, 49785
Lrrc74b 16 17544465 to 17561247 16782 - protein coding gene leucine rich repeat containing 74B
Tssr140194 16 17554806 to 17554814 8 - TSS region transcription start site region 140194
Tssr140195 16 17561240 to 17561254 14 - TSS region transcription start site region 140195
P2rx6 16 17561855 to 17572012 10157 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 6
Tssr137312 16 17561992 to 17562042 50 + TSS region transcription start site region 137312
Slc7a4 16 17572018 to 17576893 4875 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
Tssr140196 16 17576169 to 17576183 14 - TSS region transcription start site region 140196
Tssr140197 16 17576216 to 17576237 21 - TSS region transcription start site region 140197
Cpgi8018 16 17576275 to 17576969 694 CpG island CpG island 8018
Tssr140198 16 17576661 to 17576698 37 - TSS region transcription start site region 140198
Tssr137313 16 17581186 to 17581188 2 + TSS region transcription start site region 137313
Cpgi8019 16 17619275 to 17620144 869 CpG island CpG island 8019
Tssr137314 16 17619341 to 17619387 46 + TSS region transcription start site region 137314
Smpd4 16 17619354 to 17644828 25474 + protein coding gene sphingomyelin phosphodiesterase 4
Tssr137315 16 17619443 to 17619450 7 + TSS region transcription start site region 137315
Tssr137316 16 17619470 to 17619479 9 + TSS region transcription start site region 137316
Tssr137317 16 17619489 to 17619498 9 + TSS region transcription start site region 137317
Tssr137318 16 17619503 to 17619514 11 + TSS region transcription start site region 137318
Tssr137319 16 17619530 to 17619548 18 + TSS region transcription start site region 137319