Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:16455736-17307990

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fgd4 16 16416910 to 16600541 183631 - protein coding gene FYVE, RhoGEF and PH domain containing 4
Tssr140126 16 16456071 to 16456075 4 - TSS region transcription start site region 140126
Tssr140127 16 16473976 to 16473987 11 - TSS region transcription start site region 140127
Tssr140128 16 16490536 to 16490548 12 - TSS region transcription start site region 140128
Tssr140129 16 16496139 to 16496153 14 - TSS region transcription start site region 140129
Tssr140130 16 16527271 to 16527298 27 - TSS region transcription start site region 140130
Tssr140131 16 16527300 to 16527322 22 - TSS region transcription start site region 140131
Tssr140132 16 16527364 to 16527419 55 - TSS region transcription start site region 140132
Tssr140133 16 16542169 to 16542187 18 - TSS region transcription start site region 140133
Tssr140134 16 16542189 to 16542209 20 - TSS region transcription start site region 140134
Gm16139 16 16542323 to 16542742 419 + pseudogene predicted gene 16139
Tssr140135 16 16560118 to 16560145 27 - TSS region transcription start site region 140135
Tssr140136 16 16560146 to 16560197 51 - TSS region transcription start site region 140136
Tssr140137 16 16560201 to 16560223 22 - TSS region transcription start site region 140137
Tssr140138 16 16560371 to 16560382 11 - TSS region transcription start site region 140138
Tssr140139 16 16565637 to 16565639 2 - TSS region transcription start site region 140139
Tssr140140 16 16571108 to 16571115 7 - TSS region transcription start site region 140140
Tssr140141 16 16571433 to 16571445 12 - TSS region transcription start site region 140141
Tssr140142 16 16571448 to 16571471 23 - TSS region transcription start site region 140142
Tssr140143 16 16571478 to 16571497 19 - TSS region transcription start site region 140143
Tssr140144 16 16571523 to 16571535 12 - TSS region transcription start site region 140144
Cpgi7998 16 16599504 to 16600405 901 CpG island CpG island 7998
Tssr140145 16 16600011 to 16600081 70 - TSS region transcription start site region 140145
Tssr140146 16 16600097 to 16600110 13 - TSS region transcription start site region 140146
Tssr140147 16 16600533 to 16600576 43 - TSS region transcription start site region 140147
Gm44932 16 16672390 to 16672510 120 - pseudogene predicted gene 44932
Olfr19 16 16673050 to 16673979 929 - protein coding gene olfactory receptor 19
4933404G15Rik 16 16707687 to 16718121 10434 - lincRNA gene RIKEN cDNA 4933404G15 gene
Tssr140148 16 16718090 to 16718103 13 - TSS region transcription start site region 140148
Tssr140149 16 16718111 to 16718120 9 - TSS region transcription start site region 140149
Tssr140150 16 16718126 to 16718135 9 - TSS region transcription start site region 140150
Gm46570 16 16718213 to 16730527 12314 + lncRNA gene predicted gene, 46570
Gm34340 16 16728744 to 16742837 14093 - lncRNA gene predicted gene, 34340
Spag6l 16 16753016 to 16829456 76440 - protein coding gene sperm associated antigen 6-like
Rpl31-ps12 16 16819749 to 16820123 374 - pseudogene ribosomal protein L31, pseudogene 1 2
Cpgi7999 16 16828920 to 16829496 576 CpG island CpG island 7999
Tssr140151 16 16829243 to 16829253 10 - TSS region transcription start site region 140151
Tssr140152 16 16829258 to 16829261 3 - TSS region transcription start site region 140152
Tssr140153 16 16829276 to 16829349 73 - TSS region transcription start site region 140153
Gm49644 16 16848851 to 16849698 847 - pseudogene predicted gene, 49644
Tssr4803 16 16852297 to 16852312 15 + TSS region transcription start site region 4803
Gm5768 16 16852315 to 16853857 1542 + pseudogene predicted gene 5768
n-TKctt3 16 16854264 to 16854336 72 + tRNA gene nuclear encoded tRNA lysine 3 (anticodon CTT)
Igll1 16 16860671 to 16863985 3314 - protein coding gene immunoglobulin lambda-like polypeptide 1
Tssr140154 16 16863874 to 16863885 11 - TSS region transcription start site region 140154
Tssr140155 16 16863938 to 16863955 17 - TSS region transcription start site region 140155
Tssr140156 16 16863975 to 16864006 31 - TSS region transcription start site region 140156
Tssr140157 16 16865939 to 16865947 8 - TSS region transcription start site region 140157
Vpreb1 16 16868401 to 16869255 854 - protein coding gene pre-B lymphocyte gene 1
Tssr4804 16 16869259 to 16869283 24 - TSS region transcription start site region 4804
Cpgi8000 16 16870590 to 16871390 800 CpG island CpG island 8000
Tssr137244 16 16870707 to 16870718 11 + TSS region transcription start site region 137244
Tssr137245 16 16870727 to 16870736 9 + TSS region transcription start site region 137245
Top3b 16 16870736 to 16892990 22254 + protein coding gene topoisomerase (DNA) III beta
Tssr137246 16 16870742 to 16870816 74 + TSS region transcription start site region 137246
Tssr137247 16 16870829 to 16870844 15 + TSS region transcription start site region 137247
Tssr137248 16 16870864 to 16870908 44 + TSS region transcription start site region 137248
Tssr137249 16 16870955 to 16870969 14 + TSS region transcription start site region 137249
Tssr137250 16 16870994 to 16870997 3 + TSS region transcription start site region 137250
Cpgi8001 16 16896313 to 16896789 476 CpG island CpG island 8001
Ppm1f 16 16896469 to 16927364 30895 + protein coding gene protein phosphatase 1F (PP2C domain containing)
Tssr137251 16 16896556 to 16896598 42 + TSS region transcription start site region 137251
Gm49595 16 16909431 to 16911716 2285 - antisense lncRNA gene predicted gene, 49595
D16Mit74.1 16 16932538 to 16932647 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74.1
D16Mit74 16 16932693 to 16932807 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74
Gm46540 16 16932861 to 16933095 234 + pseudogene predicted gene, 46540
Gm6438 16 16968609 to 16969068 459 + pseudogene predicted gene 6438
Cpgi8002 16 16983043 to 16984086 1043 CpG island CpG island 8002
Mapk1 16 16983382 to 17047453 64071 + protein coding gene mitogen-activated protein kinase 1
Tssr137252 16 16983395 to 16983416 21 + TSS region transcription start site region 137252
Tssr137253 16 16983417 to 16983428 11 + TSS region transcription start site region 137253
Tssr137254 16 16983435 to 16983442 7 + TSS region transcription start site region 137254
Tssr137255 16 16983454 to 16983461 7 + TSS region transcription start site region 137255
Gm22558 16 17006107 to 17006201 94 - snRNA gene predicted gene, 22558
Tssr137256 16 17018384 to 17018399 15 + TSS region transcription start site region 137256
Tssr137257 16 17026353 to 17026371 18 + TSS region transcription start site region 137257
Tssr137258 16 17026410 to 17026434 24 + TSS region transcription start site region 137258
Tssr137259 16 17035583 to 17035596 13 + TSS region transcription start site region 137259
Tssr137260 16 17043697 to 17043736 39 + TSS region transcription start site region 137260
Tssr137261 16 17043961 to 17043982 21 + TSS region transcription start site region 137261
Tssr137262 16 17044203 to 17044216 13 + TSS region transcription start site region 137262
Tssr137263 16 17044539 to 17044559 20 + TSS region transcription start site region 137263
Tssr137264 16 17045105 to 17045143 38 + TSS region transcription start site region 137264
1700056N10Rik 16 17047520 to 17049111 1591 + lincRNA gene RIKEN cDNA 1700056N10 gene
Cpgi8003 16 17069679 to 17070495 816 CpG island CpG island 8003
Tssr137265 16 17070127 to 17070215 88 + TSS region transcription start site region 137265
Ypel1 16 17070139 to 17086736 16597 + protein coding gene yippee like 1
Tssr137266 16 17070220 to 17070239 19 + TSS region transcription start site region 137266
Tssr137267 16 17070247 to 17070254 7 + TSS region transcription start site region 137267
Tssr137268 16 17070264 to 17070275 11 + TSS region transcription start site region 137268
Tssr137269 16 17070281 to 17070320 39 + TSS region transcription start site region 137269
Tssr137270 16 17070323 to 17070336 13 + TSS region transcription start site region 137270
Tssr137271 16 17070342 to 17070345 3 + TSS region transcription start site region 137271
Gm9974 16 17081999 to 17082691 692 - pseudogene predicted gene 9974
Ppil2 16 17086555 to 17111257 24702 - protein coding gene peptidylprolyl isomerase (cyclophilin)-like 2
Gm49584 16 17092815 to 17096350 3535 + antisense lncRNA gene predicted gene, 49584
Tssr140158 16 17096985 to 17097002 17 - TSS region transcription start site region 140158
Cpgi8004 16 17110831 to 17111448 617 CpG island CpG island 8004
Tssr140159 16 17111191 to 17111196 5 - TSS region transcription start site region 140159
Tssr140160 16 17111204 to 17111255 51 - TSS region transcription start site region 140160
2610318N02Rik 16 17113398 to 17125167 11769 - protein coding gene RIKEN cDNA 2610318N02 gene
Cpgi8005 16 17121072 to 17121582 510 CpG island CpG island 8005
Tssr140161 16 17121708 to 17121711 3 - TSS region transcription start site region 140161
Tssr140162 16 17121734 to 17121767 33 - TSS region transcription start site region 140162
Tssr140163 16 17121771 to 17121795 24 - TSS region transcription start site region 140163
Mirc25 16 17124061 to 17124496 435 complex/cluster/region microRNA cluster 25, including Mir130b through Mir301b
Mir130b 16 17124061 to 17124142 81 - miRNA gene microRNA 130b
Mir301b 16 17124400 to 17124496 96 - miRNA gene microRNA 301b
Cpgi8006 16 17125027 to 17125270 243 CpG island CpG island 8006
Tssr140164 16 17125130 to 17125146 16 - TSS region transcription start site region 140164
Sdf2l1 16 17130138 to 17132383 2245 - protein coding gene stromal cell-derived factor 2-like 1
Tssr140165 16 17130276 to 17130280 4 - TSS region transcription start site region 140165
Cpgi8007 16 17131472 to 17132687 1215 CpG island CpG island 8007
Tssr140166 16 17132302 to 17132313 11 - TSS region transcription start site region 140166
Tssr140167 16 17132325 to 17132367 42 - TSS region transcription start site region 140167
Tssr140168 16 17132377 to 17132388 11 - TSS region transcription start site region 140168
Tssr137272 16 17137294 to 17137327 33 + TSS region transcription start site region 137272
Gm6440 16 17137328 to 17137681 353 + pseudogene predicted gene 6440
Ccdc116 16 17139064 to 17147229 8165 - protein coding gene coiled-coil domain containing 116
Tssr140169 16 17144391 to 17144401 10 - TSS region transcription start site region 140169
Tssr140170 16 17144415 to 17144451 36 - TSS region transcription start site region 140170
Tssr137273 16 17144600 to 17144622 22 + TSS region transcription start site region 137273
Cpgi8008 16 17146821 to 17148356 1535 CpG island CpG island 8008
Tssr137274 16 17146939 to 17146985 46 + TSS region transcription start site region 137274
Ydjc 16 17146950 to 17148857 1907 + protein coding gene YdjC homolog (bacterial)
Tssr140171 16 17147575 to 17147592 17 - TSS region transcription start site region 140171
Tssr140172 16 17148215 to 17148227 12 - TSS region transcription start site region 140172
Ube2l3 16 17152015 to 17201512 49497 - protein coding gene ubiquitin-conjugating enzyme E2L 3
Tssr140173 16 17153760 to 17153806 46 - TSS region transcription start site region 140173
Tssr140174 16 17166932 to 17166936 4 - TSS region transcription start site region 140174
Tssr140175 16 17175955 to 17175965 10 - TSS region transcription start site region 140175
Tssr4805 16 17181636 to 17181647 11 + TSS region transcription start site region 4805
Cpgi8009 16 17200709 to 17201650 941 CpG island CpG island 8009
Tssr137275 16 17200938 to 17200952 14 + TSS region transcription start site region 137275
Tssr140176 16 17201200 to 17201209 9 - TSS region transcription start site region 140176
Tssr140177 16 17201457 to 17201482 25 - TSS region transcription start site region 140177
Tssr140178 16 17201490 to 17201507 17 - TSS region transcription start site region 140178
Gm22129 16 17205792 to 17205898 106 - snRNA gene predicted gene, 22129
Cpgi8010 16 17208470 to 17210665 2195 CpG island CpG island 8010
Tssr137276 16 17208603 to 17208628 25 + TSS region transcription start site region 137276
Rimbp3 16 17208603 to 17213982 5379 + protein coding gene RIMS binding protein 3
Tssr137277 16 17208631 to 17208663 32 + TSS region transcription start site region 137277
Tssr137278 16 17208869 to 17208903 34 + TSS region transcription start site region 137278
Tssr140179 16 17214194 to 17214209 15 - TSS region transcription start site region 140179
Tssr137279 16 17222285 to 17222296 11 + TSS region transcription start site region 137279
Tssr137280 16 17222307 to 17222321 14 + TSS region transcription start site region 137280
Tssr137281 16 17222356 to 17222391 35 + TSS region transcription start site region 137281
Tssr140180 16 17222400 to 17222429 29 - TSS region transcription start site region 140180
Cpgi8011 16 17232955 to 17234339 1384 CpG island CpG island 8011
Tssr137282 16 17233560 to 17233590 30 + TSS region transcription start site region 137282
Hic2 16 17233587 to 17263430 29843 + protein coding gene hypermethylated in cancer 2
Gm49573 16 17233601 to 17276718 43117 + unclassified non-coding RNA gene predicted gene, 49573
Tssr137283 16 17253115 to 17253134 19 + TSS region transcription start site region 137283
Gm26635 16 17254960 to 17260326 5366 - lincRNA gene predicted gene, 26635
Tssr137284 16 17266390 to 17266393 3 + TSS region transcription start site region 137284
Cpgi8012 16 17276087 to 17278480 2393 CpG island CpG island 8012
Tssr137285 16 17276291 to 17276330 39 + TSS region transcription start site region 137285
Tmem191c 16 17276300 to 17278661 2361 + protein coding gene transmembrane protein 191C
Tssr137286 16 17276337 to 17276358 21 + TSS region transcription start site region 137286
Tssr137287 16 17276662 to 17276680 18 + TSS region transcription start site region 137287
Pi4ka 16 17280351 to 17406314 125963 - protein coding gene phosphatidylinositol 4-kinase alpha
Tssr140181 16 17281512 to 17281516 4 - TSS region transcription start site region 140181
Tssr140182 16 17288555 to 17288575 20 - TSS region transcription start site region 140182
Tssr137288 16 17303276 to 17303280 4 + TSS region transcription start site region 137288