Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:16236523-16906535

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkp2 16 16213345 to 16272712 59367 + protein coding gene plakophilin 2
Tssr137239 16 16269681 to 16269689 8 + TSS region transcription start site region 137239
Gm5481 16 16275603 to 16275947 344 + protein coding gene predicted gene 5481
Tssr140117 16 16292034 to 16292038 4 - TSS region transcription start site region 140117
Cpgi7996 16 16302545 to 16303799 1254 CpG island CpG island 7996
Tssr137240 16 16302955 to 16302987 32 + TSS region transcription start site region 137240
Yars2 16 16302965 to 16309640 6675 + protein coding gene tyrosyl-tRNA synthetase 2 (mitochondrial)
Tssr137241 16 16303018 to 16303029 11 + TSS region transcription start site region 137241
Tssr137242 16 16303536 to 16303564 28 + TSS region transcription start site region 137242
Tssr137243 16 16306468 to 16306494 26 + TSS region transcription start site region 137243
Dnm1l 16 16312230 to 16358959 46729 - protein coding gene dynamin 1-like
Tssr140118 16 16313424 to 16313444 20 - TSS region transcription start site region 140118
Gm49521 16 16349203 to 16359011 9808 + antisense lncRNA gene predicted gene, 49521
Cpgi7997 16 16358466 to 16359168 702 CpG island CpG island 7997
Tssr140119 16 16358512 to 16358523 11 - TSS region transcription start site region 140119
Tssr140120 16 16358528 to 16358573 45 - TSS region transcription start site region 140120
Tssr140121 16 16358903 to 16359009 106 - TSS region transcription start site region 140121
Tssr140122 16 16359016 to 16359040 24 - TSS region transcription start site region 140122
Gm7765 16 16365184 to 16366157 973 - pseudogene predicted gene 7765
Tssr140123 16 16367247 to 16367271 24 - TSS region transcription start site region 140123
Gm18869 16 16379212 to 16380208 996 + pseudogene predicted gene, 18869
Tssr4802 16 16409584 to 16409587 3 + TSS region transcription start site region 4802
Fgd4 16 16416910 to 16600541 183631 - protein coding gene FYVE, RhoGEF and PH domain containing 4
Tssr140124 16 16439485 to 16439517 32 - TSS region transcription start site region 140124
Tssr140125 16 16455074 to 16455078 4 - TSS region transcription start site region 140125
Tssr140126 16 16456071 to 16456075 4 - TSS region transcription start site region 140126
Tssr140127 16 16473976 to 16473987 11 - TSS region transcription start site region 140127
Tssr140128 16 16490536 to 16490548 12 - TSS region transcription start site region 140128
Tssr140129 16 16496139 to 16496153 14 - TSS region transcription start site region 140129
Tssr140130 16 16527271 to 16527298 27 - TSS region transcription start site region 140130
Tssr140131 16 16527300 to 16527322 22 - TSS region transcription start site region 140131
Tssr140132 16 16527364 to 16527419 55 - TSS region transcription start site region 140132
Tssr140133 16 16542169 to 16542187 18 - TSS region transcription start site region 140133
Tssr140134 16 16542189 to 16542209 20 - TSS region transcription start site region 140134
Gm16139 16 16542323 to 16542742 419 + pseudogene predicted gene 16139
Tssr140135 16 16560118 to 16560145 27 - TSS region transcription start site region 140135
Tssr140136 16 16560146 to 16560197 51 - TSS region transcription start site region 140136
Tssr140137 16 16560201 to 16560223 22 - TSS region transcription start site region 140137
Tssr140138 16 16560371 to 16560382 11 - TSS region transcription start site region 140138
Tssr140139 16 16565637 to 16565639 2 - TSS region transcription start site region 140139
Tssr140140 16 16571108 to 16571115 7 - TSS region transcription start site region 140140
Tssr140141 16 16571433 to 16571445 12 - TSS region transcription start site region 140141
Tssr140142 16 16571448 to 16571471 23 - TSS region transcription start site region 140142
Tssr140143 16 16571478 to 16571497 19 - TSS region transcription start site region 140143
Tssr140144 16 16571523 to 16571535 12 - TSS region transcription start site region 140144
Cpgi7998 16 16599504 to 16600405 901 CpG island CpG island 7998
Tssr140145 16 16600011 to 16600081 70 - TSS region transcription start site region 140145
Tssr140146 16 16600097 to 16600110 13 - TSS region transcription start site region 140146
Tssr140147 16 16600533 to 16600576 43 - TSS region transcription start site region 140147
Gm44932 16 16672390 to 16672510 120 - pseudogene predicted gene 44932
Olfr19 16 16673050 to 16673979 929 - protein coding gene olfactory receptor 19
4933404G15Rik 16 16707687 to 16718121 10434 - lincRNA gene RIKEN cDNA 4933404G15 gene
Tssr140148 16 16718090 to 16718103 13 - TSS region transcription start site region 140148
Tssr140149 16 16718111 to 16718120 9 - TSS region transcription start site region 140149
Tssr140150 16 16718126 to 16718135 9 - TSS region transcription start site region 140150
Gm46570 16 16718213 to 16730527 12314 + lncRNA gene predicted gene, 46570
Gm34340 16 16728744 to 16742837 14093 - lncRNA gene predicted gene, 34340
Spag6l 16 16753016 to 16829456 76440 - protein coding gene sperm associated antigen 6-like
Rpl31-ps12 16 16819749 to 16820123 374 - pseudogene ribosomal protein L31, pseudogene 1 2
Cpgi7999 16 16828920 to 16829496 576 CpG island CpG island 7999
Tssr140151 16 16829243 to 16829253 10 - TSS region transcription start site region 140151
Tssr140152 16 16829258 to 16829261 3 - TSS region transcription start site region 140152
Tssr140153 16 16829276 to 16829349 73 - TSS region transcription start site region 140153
Gm49644 16 16848851 to 16849698 847 - pseudogene predicted gene, 49644
Tssr4803 16 16852297 to 16852312 15 + TSS region transcription start site region 4803
Gm5768 16 16852315 to 16853857 1542 + pseudogene predicted gene 5768
n-TKctt3 16 16854264 to 16854336 72 + tRNA gene nuclear encoded tRNA lysine 3 (anticodon CTT)
Igll1 16 16860671 to 16863985 3314 - protein coding gene immunoglobulin lambda-like polypeptide 1
Tssr140154 16 16863874 to 16863885 11 - TSS region transcription start site region 140154
Tssr140155 16 16863938 to 16863955 17 - TSS region transcription start site region 140155
Tssr140156 16 16863975 to 16864006 31 - TSS region transcription start site region 140156
Tssr140157 16 16865939 to 16865947 8 - TSS region transcription start site region 140157
Vpreb1 16 16868401 to 16869255 854 - protein coding gene pre-B lymphocyte gene 1
Tssr4804 16 16869259 to 16869283 24 - TSS region transcription start site region 4804
Cpgi8000 16 16870590 to 16871390 800 CpG island CpG island 8000
Tssr137244 16 16870707 to 16870718 11 + TSS region transcription start site region 137244
Tssr137245 16 16870727 to 16870736 9 + TSS region transcription start site region 137245
Top3b 16 16870736 to 16892990 22254 + protein coding gene topoisomerase (DNA) III beta
Tssr137246 16 16870742 to 16870816 74 + TSS region transcription start site region 137246
Tssr137247 16 16870829 to 16870844 15 + TSS region transcription start site region 137247
Tssr137248 16 16870864 to 16870908 44 + TSS region transcription start site region 137248
Tssr137249 16 16870955 to 16870969 14 + TSS region transcription start site region 137249
Tssr137250 16 16870994 to 16870997 3 + TSS region transcription start site region 137250
Cpgi8001 16 16896313 to 16896789 476 CpG island CpG island 8001
Ppm1f 16 16896469 to 16927364 30895 + protein coding gene protein phosphatase 1F (PP2C domain containing)
Tssr137251 16 16896556 to 16896598 42 + TSS region transcription start site region 137251