Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:16127323-16957742

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spidr 16 15889224 to 16146851 257627 - protein coding gene scaffolding protein involved in DNA repair
Cpgi7993 16 16146349 to 16147104 755 CpG island CpG island 7993
Tssr140116 16 16146771 to 16146836 65 - TSS region transcription start site region 140116
Rpl29-ps4 16 16158214 to 16158865 651 + pseudogene ribosomal protein L29, pseudogene 4
D16Ertd727e 16 16196302 to 16198747 2445 - pseudogene DNA segment, Chr 16, ERATO Doi 727, expressed
Cpgi7994 16 16213033 to 16213830 797 CpG island CpG island 7994
Tssr137236 16 16213122 to 16213138 16 + TSS region transcription start site region 137236
Tssr137237 16 16213325 to 16213364 39 + TSS region transcription start site region 137237
Pkp2 16 16213345 to 16272712 59367 + protein coding gene plakophilin 2
Cpgi7995 16 16225850 to 16226320 470 CpG island CpG island 7995
Tssr137238 16 16232428 to 16232432 4 + TSS region transcription start site region 137238
Tssr137239 16 16269681 to 16269689 8 + TSS region transcription start site region 137239
Gm5481 16 16275603 to 16275947 344 + protein coding gene predicted gene 5481
Tssr140117 16 16292034 to 16292038 4 - TSS region transcription start site region 140117
Cpgi7996 16 16302545 to 16303799 1254 CpG island CpG island 7996
Tssr137240 16 16302955 to 16302987 32 + TSS region transcription start site region 137240
Yars2 16 16302965 to 16309640 6675 + protein coding gene tyrosyl-tRNA synthetase 2 (mitochondrial)
Tssr137241 16 16303018 to 16303029 11 + TSS region transcription start site region 137241
Tssr137242 16 16303536 to 16303564 28 + TSS region transcription start site region 137242
Tssr137243 16 16306468 to 16306494 26 + TSS region transcription start site region 137243
Dnm1l 16 16312230 to 16358959 46729 - protein coding gene dynamin 1-like
Tssr140118 16 16313424 to 16313444 20 - TSS region transcription start site region 140118
Gm49521 16 16349203 to 16359011 9808 + antisense lncRNA gene predicted gene, 49521
Cpgi7997 16 16358466 to 16359168 702 CpG island CpG island 7997
Tssr140119 16 16358512 to 16358523 11 - TSS region transcription start site region 140119
Tssr140120 16 16358528 to 16358573 45 - TSS region transcription start site region 140120
Tssr140121 16 16358903 to 16359009 106 - TSS region transcription start site region 140121
Tssr140122 16 16359016 to 16359040 24 - TSS region transcription start site region 140122
Gm7765 16 16365184 to 16366157 973 - pseudogene predicted gene 7765
Tssr140123 16 16367247 to 16367271 24 - TSS region transcription start site region 140123
Gm18869 16 16379212 to 16380208 996 + pseudogene predicted gene, 18869
Tssr4802 16 16409584 to 16409587 3 + TSS region transcription start site region 4802
Fgd4 16 16416910 to 16600541 183631 - protein coding gene FYVE, RhoGEF and PH domain containing 4
Tssr140124 16 16439485 to 16439517 32 - TSS region transcription start site region 140124
Tssr140125 16 16455074 to 16455078 4 - TSS region transcription start site region 140125
Tssr140126 16 16456071 to 16456075 4 - TSS region transcription start site region 140126
Tssr140127 16 16473976 to 16473987 11 - TSS region transcription start site region 140127
Tssr140128 16 16490536 to 16490548 12 - TSS region transcription start site region 140128
Tssr140129 16 16496139 to 16496153 14 - TSS region transcription start site region 140129
Tssr140130 16 16527271 to 16527298 27 - TSS region transcription start site region 140130
Tssr140131 16 16527300 to 16527322 22 - TSS region transcription start site region 140131
Tssr140132 16 16527364 to 16527419 55 - TSS region transcription start site region 140132
Tssr140133 16 16542169 to 16542187 18 - TSS region transcription start site region 140133
Tssr140134 16 16542189 to 16542209 20 - TSS region transcription start site region 140134
Gm16139 16 16542323 to 16542742 419 + pseudogene predicted gene 16139
Tssr140135 16 16560118 to 16560145 27 - TSS region transcription start site region 140135
Tssr140136 16 16560146 to 16560197 51 - TSS region transcription start site region 140136
Tssr140137 16 16560201 to 16560223 22 - TSS region transcription start site region 140137
Tssr140138 16 16560371 to 16560382 11 - TSS region transcription start site region 140138
Tssr140139 16 16565637 to 16565639 2 - TSS region transcription start site region 140139
Tssr140140 16 16571108 to 16571115 7 - TSS region transcription start site region 140140
Tssr140141 16 16571433 to 16571445 12 - TSS region transcription start site region 140141
Tssr140142 16 16571448 to 16571471 23 - TSS region transcription start site region 140142
Tssr140143 16 16571478 to 16571497 19 - TSS region transcription start site region 140143
Tssr140144 16 16571523 to 16571535 12 - TSS region transcription start site region 140144
Cpgi7998 16 16599504 to 16600405 901 CpG island CpG island 7998
Tssr140145 16 16600011 to 16600081 70 - TSS region transcription start site region 140145
Tssr140146 16 16600097 to 16600110 13 - TSS region transcription start site region 140146
Tssr140147 16 16600533 to 16600576 43 - TSS region transcription start site region 140147
Gm44932 16 16672390 to 16672510 120 - pseudogene predicted gene 44932
Olfr19 16 16673050 to 16673979 929 - protein coding gene olfactory receptor 19
4933404G15Rik 16 16707687 to 16718121 10434 - lincRNA gene RIKEN cDNA 4933404G15 gene
Tssr140148 16 16718090 to 16718103 13 - TSS region transcription start site region 140148
Tssr140149 16 16718111 to 16718120 9 - TSS region transcription start site region 140149
Tssr140150 16 16718126 to 16718135 9 - TSS region transcription start site region 140150
Gm46570 16 16718213 to 16730527 12314 + lncRNA gene predicted gene, 46570
Gm34340 16 16728744 to 16742837 14093 - lncRNA gene predicted gene, 34340
Spag6l 16 16753016 to 16829456 76440 - protein coding gene sperm associated antigen 6-like
Rpl31-ps12 16 16819749 to 16820123 374 - pseudogene ribosomal protein L31, pseudogene 1 2
Cpgi7999 16 16828920 to 16829496 576 CpG island CpG island 7999
Tssr140151 16 16829243 to 16829253 10 - TSS region transcription start site region 140151
Tssr140152 16 16829258 to 16829261 3 - TSS region transcription start site region 140152
Tssr140153 16 16829276 to 16829349 73 - TSS region transcription start site region 140153
Gm49644 16 16848851 to 16849698 847 - pseudogene predicted gene, 49644
Tssr4803 16 16852297 to 16852312 15 + TSS region transcription start site region 4803
Gm5768 16 16852315 to 16853857 1542 + pseudogene predicted gene 5768
n-TKctt3 16 16854264 to 16854336 72 + tRNA gene nuclear encoded tRNA lysine 3 (anticodon CTT)
Igll1 16 16860671 to 16863985 3314 - protein coding gene immunoglobulin lambda-like polypeptide 1
Tssr140154 16 16863874 to 16863885 11 - TSS region transcription start site region 140154
Tssr140155 16 16863938 to 16863955 17 - TSS region transcription start site region 140155
Tssr140156 16 16863975 to 16864006 31 - TSS region transcription start site region 140156
Tssr140157 16 16865939 to 16865947 8 - TSS region transcription start site region 140157
Vpreb1 16 16868401 to 16869255 854 - protein coding gene pre-B lymphocyte gene 1
Tssr4804 16 16869259 to 16869283 24 - TSS region transcription start site region 4804
Cpgi8000 16 16870590 to 16871390 800 CpG island CpG island 8000
Tssr137244 16 16870707 to 16870718 11 + TSS region transcription start site region 137244
Tssr137245 16 16870727 to 16870736 9 + TSS region transcription start site region 137245
Top3b 16 16870736 to 16892990 22254 + protein coding gene topoisomerase (DNA) III beta
Tssr137246 16 16870742 to 16870816 74 + TSS region transcription start site region 137246
Tssr137247 16 16870829 to 16870844 15 + TSS region transcription start site region 137247
Tssr137248 16 16870864 to 16870908 44 + TSS region transcription start site region 137248
Tssr137249 16 16870955 to 16870969 14 + TSS region transcription start site region 137249
Tssr137250 16 16870994 to 16870997 3 + TSS region transcription start site region 137250
Cpgi8001 16 16896313 to 16896789 476 CpG island CpG island 8001
Ppm1f 16 16896469 to 16927364 30895 + protein coding gene protein phosphatase 1F (PP2C domain containing)
Tssr137251 16 16896556 to 16896598 42 + TSS region transcription start site region 137251
Gm49595 16 16909431 to 16911716 2285 - antisense lncRNA gene predicted gene, 49595
D16Mit74.1 16 16932538 to 16932647 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74.1
D16Mit74 16 16932693 to 16932807 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74
Gm46540 16 16932861 to 16933095 234 + pseudogene predicted gene, 46540