Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:15793325-16633364

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkdc 16 15637866 to 15842235 204369 + protein coding gene protein kinase, DNA activated, catalytic polypeptide
Mzt2 16 15848441 to 15863364 14923 - protein coding gene mitotic spindle organizing protein 2
Cpgi7991 16 15862453 to 15863570 1117 CpG island CpG island 7991
Tssr140100 16 15862923 to 15862951 28 - TSS region transcription start site region 140100
Tssr140101 16 15863119 to 15863126 7 - TSS region transcription start site region 140101
Tssr140102 16 15863223 to 15863238 15 - TSS region transcription start site region 140102
Tssr140103 16 15863263 to 15863273 10 - TSS region transcription start site region 140103
Tssr140104 16 15863293 to 15863339 46 - TSS region transcription start site region 140104
Tssr140105 16 15863354 to 15863359 5 - TSS region transcription start site region 140105
Gm41425 16 15863448 to 15877478 14030 + lncRNA gene predicted gene, 41425
Gm20082 16 15871829 to 15872159 330 + pseudogene predicted gene, 20082
Tssr140106 16 15885621 to 15885629 8 - TSS region transcription start site region 140106
Cpgi7992 16 15886654 to 15888596 1942 CpG island CpG island 7992
Tssr140107 16 15887131 to 15887161 30 - TSS region transcription start site region 140107
Tssr137226 16 15887278 to 15887292 14 + TSS region transcription start site region 137226
Cebpd 16 15887286 to 15889545 2259 + protein coding gene CCAAT/enhancer binding protein (C/EBP), delta
Tssr137227 16 15887448 to 15887461 13 + TSS region transcription start site region 137227
Tssr137228 16 15887776 to 15887800 24 + TSS region transcription start site region 137228
Tssr137229 16 15888135 to 15888152 17 + TSS region transcription start site region 137229
Spidr 16 15889224 to 16146851 257627 - protein coding gene scaffolding protein involved in DNA repair
Tssr137230 16 15892236 to 15892239 3 + TSS region transcription start site region 137230
Tssr140108 16 15895707 to 15895721 14 - TSS region transcription start site region 140108
Tssr140109 16 15895724 to 15895732 8 - TSS region transcription start site region 140109
Tssr140110 16 15895765 to 15895795 30 - TSS region transcription start site region 140110
Tssr140111 16 15895797 to 15895804 7 - TSS region transcription start site region 140111
nmf219 16 15913052 to 32312179 16399127 heritable phenotypic marker neuroscience mutagenesis facility, 219
D16Mit34 16 15913052 to 15913189 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 34
Rapop1 16 15913189 to 3962915 -11950274 QTL radiation-induced apoptosis 1
Tssr140112 16 15957740 to 15957743 3 - TSS region transcription start site region 140112
Tssr140113 16 15966655 to 15966670 15 - TSS region transcription start site region 140113
Tssr137231 16 15984477 to 15984512 35 + TSS region transcription start site region 137231
n-R5s31 16 16010900 to 16011009 109 - rRNA gene nuclear encoded rRNA 5S 31
Gm10121 16 16048815 to 16049759 944 + pseudogene predicted gene 10121
Tssr137232 16 16072742 to 16072751 9 + TSS region transcription start site region 137232
Tssr137233 16 16072755 to 16072773 18 + TSS region transcription start site region 137233
Tssr137234 16 16072781 to 16072792 11 + TSS region transcription start site region 137234
Tssr137235 16 16072793 to 16072797 4 + TSS region transcription start site region 137235
Tssr140114 16 16073392 to 16073399 7 - TSS region transcription start site region 140114
Tssr140115 16 16073404 to 16073450 46 - TSS region transcription start site region 140115
Gm18334 16 16099600 to 16100109 509 + pseudogene predicted gene, 18334
Cpgi7993 16 16146349 to 16147104 755 CpG island CpG island 7993
Tssr140116 16 16146771 to 16146836 65 - TSS region transcription start site region 140116
Rpl29-ps4 16 16158214 to 16158865 651 + pseudogene ribosomal protein L29, pseudogene 4
D16Ertd727e 16 16196302 to 16198747 2445 - pseudogene DNA segment, Chr 16, ERATO Doi 727, expressed
Cpgi7994 16 16213033 to 16213830 797 CpG island CpG island 7994
Tssr137236 16 16213122 to 16213138 16 + TSS region transcription start site region 137236
Tssr137237 16 16213325 to 16213364 39 + TSS region transcription start site region 137237
Pkp2 16 16213345 to 16272712 59367 + protein coding gene plakophilin 2
Cpgi7995 16 16225850 to 16226320 470 CpG island CpG island 7995
Tssr137238 16 16232428 to 16232432 4 + TSS region transcription start site region 137238
Tssr137239 16 16269681 to 16269689 8 + TSS region transcription start site region 137239
Gm5481 16 16275603 to 16275947 344 + protein coding gene predicted gene 5481
Tssr140117 16 16292034 to 16292038 4 - TSS region transcription start site region 140117
Cpgi7996 16 16302545 to 16303799 1254 CpG island CpG island 7996
Tssr137240 16 16302955 to 16302987 32 + TSS region transcription start site region 137240
Yars2 16 16302965 to 16309640 6675 + protein coding gene tyrosyl-tRNA synthetase 2 (mitochondrial)
Tssr137241 16 16303018 to 16303029 11 + TSS region transcription start site region 137241
Tssr137242 16 16303536 to 16303564 28 + TSS region transcription start site region 137242
Tssr137243 16 16306468 to 16306494 26 + TSS region transcription start site region 137243
Dnm1l 16 16312230 to 16358959 46729 - protein coding gene dynamin 1-like
Tssr140118 16 16313424 to 16313444 20 - TSS region transcription start site region 140118
Gm49521 16 16349203 to 16359011 9808 + antisense lncRNA gene predicted gene, 49521
Cpgi7997 16 16358466 to 16359168 702 CpG island CpG island 7997
Tssr140119 16 16358512 to 16358523 11 - TSS region transcription start site region 140119
Tssr140120 16 16358528 to 16358573 45 - TSS region transcription start site region 140120
Tssr140121 16 16358903 to 16359009 106 - TSS region transcription start site region 140121
Tssr140122 16 16359016 to 16359040 24 - TSS region transcription start site region 140122
Gm7765 16 16365184 to 16366157 973 - pseudogene predicted gene 7765
Tssr140123 16 16367247 to 16367271 24 - TSS region transcription start site region 140123
Gm18869 16 16379212 to 16380208 996 + pseudogene predicted gene, 18869
Tssr4802 16 16409584 to 16409587 3 + TSS region transcription start site region 4802
Fgd4 16 16416910 to 16600541 183631 - protein coding gene FYVE, RhoGEF and PH domain containing 4
Tssr140124 16 16439485 to 16439517 32 - TSS region transcription start site region 140124
Tssr140125 16 16455074 to 16455078 4 - TSS region transcription start site region 140125
Tssr140126 16 16456071 to 16456075 4 - TSS region transcription start site region 140126
Tssr140127 16 16473976 to 16473987 11 - TSS region transcription start site region 140127
Tssr140128 16 16490536 to 16490548 12 - TSS region transcription start site region 140128
Tssr140129 16 16496139 to 16496153 14 - TSS region transcription start site region 140129
Tssr140130 16 16527271 to 16527298 27 - TSS region transcription start site region 140130
Tssr140131 16 16527300 to 16527322 22 - TSS region transcription start site region 140131
Tssr140132 16 16527364 to 16527419 55 - TSS region transcription start site region 140132
Tssr140133 16 16542169 to 16542187 18 - TSS region transcription start site region 140133
Tssr140134 16 16542189 to 16542209 20 - TSS region transcription start site region 140134
Gm16139 16 16542323 to 16542742 419 + pseudogene predicted gene 16139
Tssr140135 16 16560118 to 16560145 27 - TSS region transcription start site region 140135
Tssr140136 16 16560146 to 16560197 51 - TSS region transcription start site region 140136
Tssr140137 16 16560201 to 16560223 22 - TSS region transcription start site region 140137
Tssr140138 16 16560371 to 16560382 11 - TSS region transcription start site region 140138
Tssr140139 16 16565637 to 16565639 2 - TSS region transcription start site region 140139
Tssr140140 16 16571108 to 16571115 7 - TSS region transcription start site region 140140
Tssr140141 16 16571433 to 16571445 12 - TSS region transcription start site region 140141
Tssr140142 16 16571448 to 16571471 23 - TSS region transcription start site region 140142
Tssr140143 16 16571478 to 16571497 19 - TSS region transcription start site region 140143
Tssr140144 16 16571523 to 16571535 12 - TSS region transcription start site region 140144
Cpgi7998 16 16599504 to 16600405 901 CpG island CpG island 7998
Tssr140145 16 16600011 to 16600081 70 - TSS region transcription start site region 140145
Tssr140146 16 16600097 to 16600110 13 - TSS region transcription start site region 140146
Tssr140147 16 16600533 to 16600576 43 - TSS region transcription start site region 140147