Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:14253336-15163337

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Myh11 16 14194535 to 14291372 96837 - protein coding gene myosin, heavy polypeptide 11, smooth muscle
Tssr140088 16 14270075 to 14270080 5 - TSS region transcription start site region 140088
Tssr140089 16 14275485 to 14275488 3 - TSS region transcription start site region 140089
Tssr140090 16 14291355 to 14291371 16 - TSS region transcription start site region 140090
Cpgi7984 16 14292335 to 14292608 273 CpG island CpG island 7984
Fopnl 16 14299244 to 14317405 18161 - protein coding gene Fgfr1op N-terminal like
Gm15868 16 14311841 to 14314014 2173 + antisense lncRNA gene predicted gene 15868
Cpgi7985 16 14316878 to 14317672 794 CpG island CpG island 7985
Tssr137187 16 14317281 to 14317290 9 + TSS region transcription start site region 137187
Tssr140091 16 14317319 to 14317370 51 - TSS region transcription start site region 140091
Tssr137188 16 14317441 to 14317473 32 + TSS region transcription start site region 137188
Tssr137189 16 14317485 to 14317502 17 + TSS region transcription start site region 137189
Tssr137190 16 14317516 to 14317533 17 + TSS region transcription start site region 137190
Tssr137191 16 14352842 to 14352889 47 + TSS region transcription start site region 137191
Tssr4798 16 14357622 to 14357642 20 + TSS region transcription start site region 4798
Gm49517 16 14358432 to 14358897 465 + pseudogene predicted gene, 49517
Cpgi7986 16 14361185 to 14362004 819 CpG island CpG island 7986
Tssr137192 16 14361446 to 14361451 5 + TSS region transcription start site region 137192
Abcc1 16 14361512 to 14474879 113367 + protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 1
Tssr137193 16 14361552 to 14361601 49 + TSS region transcription start site region 137193
Tssr137194 16 14365724 to 14365743 19 + TSS region transcription start site region 137194
Tssr137195 16 14370977 to 14370992 15 + TSS region transcription start site region 137195
Tssr137196 16 14373329 to 14373335 6 + TSS region transcription start site region 137196
Tssr137197 16 14373624 to 14373650 26 + TSS region transcription start site region 137197
Gm23116 16 14382807 to 14382873 66 + snRNA gene predicted gene, 23116
Tssr137198 16 14389876 to 14389919 43 + TSS region transcription start site region 137198
Tssr137199 16 14398279 to 14398295 16 + TSS region transcription start site region 137199
Tssr137200 16 14403153 to 14403156 3 + TSS region transcription start site region 137200
D16Ertd780e 16 14434352 to 14434551 199 DNA segment DNA segment, Chr 16, ERATO Doi 780, expressed
Tssr137201 16 14441293 to 14441313 20 + TSS region transcription start site region 137201
Tssr137202 16 14451730 to 14451732 2 + TSS region transcription start site region 137202
Tssr137203 16 14458614 to 14458624 10 + TSS region transcription start site region 137203
Tssr137204 16 14472036 to 14472051 15 + TSS region transcription start site region 137204
Tssr137205 16 14473618 to 14473647 29 + TSS region transcription start site region 137205
Tssr137206 16 14474296 to 14474336 40 + TSS region transcription start site region 137206
Gm49528 16 14479898 to 14483746 3848 - pseudogene predicted gene, 49528
Tssr137207 16 14501872 to 14501883 11 + TSS region transcription start site region 137207
Gm1758 16 14502100 to 14509221 7121 + protein coding gene predicted gene 1758
A630010A05Rik 16 14562317 to 14621284 58967 + protein coding gene RIKEN cDNA A630010A05 gene
Cpgi7987 16 14705435 to 14706414 979 CpG island CpG island 7987
Tssr137208 16 14705575 to 14705590 15 + TSS region transcription start site region 137208
Tssr137209 16 14705595 to 14705618 23 + TSS region transcription start site region 137209
Tssr4799 16 14705619 to 14705635 16 + TSS region transcription start site region 4799
Tssr137210 16 14705653 to 14705668 15 + TSS region transcription start site region 137210
Tssr137211 16 14705832 to 14705858 26 + TSS region transcription start site region 137211
Snai2 16 14705859 to 14709385 3526 + protein coding gene snail family zinc finger 2
Tssr137212 16 14705868 to 14705885 17 + TSS region transcription start site region 137212
Tssr137213 16 14706881 to 14706903 22 + TSS region transcription start site region 137213
Tssr137214 16 14708115 to 14708123 8 + TSS region transcription start site region 137214
Tssr137215 16 14708137 to 14708161 24 + TSS region transcription start site region 137215
Tssr137216 16 14708171 to 14708181 10 + TSS region transcription start site region 137216
Tssr137217 16 14708210 to 14708227 17 + TSS region transcription start site region 137217
Tssr137218 16 14708265 to 14708308 43 + TSS region transcription start site region 137218
Tssr137219 16 14708309 to 14708334 25 + TSS region transcription start site region 137219
Tssr4800 16 14708336 to 14708337 1 + TSS region transcription start site region 4800
Tssr137220 16 14708360 to 14708411 51 + TSS region transcription start site region 137220
Gm49530 16 14790417 to 14791011 594 - pseudogene predicted gene, 49530
Gm25547 16 14807163 to 14807269 106 - snRNA gene predicted gene, 25547
Gm33696 16 14892467 to 14949676 57209 - antisense lncRNA gene predicted gene, 33696
Efcab1 16 14906260 to 14965910 59650 + protein coding gene EF-hand calcium binding domain 1
Tssr137221 16 14906622 to 14906680 58 + TSS region transcription start site region 137221
Gm46561 16 14957623 to 14958505 882 - pseudogene predicted gene, 46561
Gm49536 16 15000322 to 15000489 167 + pseudogene predicted gene, 49536
Cpgi7988 16 15084477 to 15085325 848 CpG island CpG island 7988
F830005K03Rik 16 15092428 to 15095785 3357 - unclassified gene RIKEN cDNA F830005K03 gene
Gm41423 16 15101376 to 15114218 12842 - lncRNA gene predicted gene, 41423
Tssr140092 16 15114100 to 15114132 32 - TSS region transcription start site region 140092