Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:13872467-15969676

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdxdc1 16 13833148 to 13903131 69983 - protein coding gene pyridoxal-dependent decarboxylase domain containing 1
Cpgi7979 16 13902257 to 13903484 1227 CpG island CpG island 7979
Tssr140060 16 13902968 to 13902985 17 - TSS region transcription start site region 140060
Tssr140061 16 13902999 to 13903014 15 - TSS region transcription start site region 140061
Tssr140062 16 13903015 to 13903035 20 - TSS region transcription start site region 140062
Tssr140063 16 13903051 to 13903069 18 - TSS region transcription start site region 140063
Tssr140064 16 13903085 to 13903149 64 - TSS region transcription start site region 140064
Tssr137168 16 13903152 to 13903211 59 + TSS region transcription start site region 137168
Mpv17l 16 13903161 to 13949619 46458 + protein coding gene Mpv17 transgene, kidney disease mutant-like
Gm15950 16 13919427 to 13921399 1972 - pseudogene predicted gene 15950
Tssr137169 16 13923987 to 13923992 5 + TSS region transcription start site region 137169
Tssr137170 16 13927737 to 13927768 31 + TSS region transcription start site region 137170
Cpgi7980 16 13940485 to 13941180 695 CpG island CpG island 7980
Tssr137171 16 13940630 to 13940722 92 + TSS region transcription start site region 137171
Tssr137172 16 13940737 to 13940746 9 + TSS region transcription start site region 137172
Gm26213 16 13969348 to 13969457 109 - rRNA gene predicted gene, 26213
Ifitm7 16 13981699 to 13986888 5189 - protein coding gene interferon induced transmembrane protein 7
Tssr137173 16 13986596 to 13986665 69 + TSS region transcription start site region 137173
Bmerb1 16 13986604 to 14101500 114896 + protein coding gene bMERB domain containing 1
Cpgi7981 16 13986802 to 13987200 398 CpG island CpG island 7981
Tssr140065 16 13986835 to 13986854 19 - TSS region transcription start site region 140065
Tssr140066 16 13986874 to 13986906 32 - TSS region transcription start site region 140066
Tssr140067 16 13986913 to 13986933 20 - TSS region transcription start site region 140067
Tssr140068 16 13986944 to 13986950 6 - TSS region transcription start site region 140068
Tssr140069 16 13987221 to 13987244 23 - TSS region transcription start site region 140069
D16Mit165 16 13996540 to 13996708 168 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 165
Ppsl 16 13996540 to 13996708 168 QTL plasma P-selectin levels
Gm15806 16 14010804 to 14011701 897 - pseudogene predicted gene 15806
2900037P16Rik 16 14012922 to 14013122 200 unclassified gene RIKEN cDNA 2900037P16 gene
Gm15807 16 14037902 to 14039009 1107 - pseudogene predicted gene 15807
Gm15808 16 14067403 to 14068006 603 + pseudogene predicted gene 15808
Tssr137174 16 14100035 to 14100046 11 + TSS region transcription start site region 137174
Marf1 16 14109166 to 14159274 50108 - protein coding gene meiosis regulator and mRNA stability 1
Tssr140070 16 14110068 to 14110069 1 - TSS region transcription start site region 140070
Gm27671 16 14128566 to 14128631 65 - miRNA gene predicted gene, 27671
Cpgi7982 16 14158881 to 14159693 812 CpG island CpG island 7982
Tssr140071 16 14159173 to 14159196 23 - TSS region transcription start site region 140071
Tssr140072 16 14159232 to 14159286 54 - TSS region transcription start site region 140072
Mir484 16 14159626 to 14159692 66 + miRNA gene microRNA 484
Tssr137175 16 14159632 to 14159643 11 + TSS region transcription start site region 137175
Cpgi7983 16 14162953 to 14163756 803 CpG island CpG island 7983
Nde1 16 14163275 to 14192928 29653 + protein coding gene nudE neurodevelopment protein 1
Tssr137176 16 14163287 to 14163307 20 + TSS region transcription start site region 137176
Tssr137177 16 14163316 to 14163352 36 + TSS region transcription start site region 137177
Tssr137178 16 14172264 to 14172267 3 + TSS region transcription start site region 137178
Myh11 16 14194535 to 14291372 96837 - protein coding gene myosin, heavy polypeptide 11, smooth muscle
Tssr140073 16 14195132 to 14195151 19 - TSS region transcription start site region 140073
Tssr140074 16 14202101 to 14202110 9 - TSS region transcription start site region 140074
Tssr140075 16 14203195 to 14203209 14 - TSS region transcription start site region 140075
Tssr140076 16 14204701 to 14204712 11 - TSS region transcription start site region 140076
Tssr140077 16 14205134 to 14205140 6 - TSS region transcription start site region 140077
Tssr137179 16 14205500 to 14205529 29 + TSS region transcription start site region 137179
Tssr137180 16 14207646 to 14207653 7 + TSS region transcription start site region 137180
Tssr137181 16 14207686 to 14207728 42 + TSS region transcription start site region 137181
Tssr140078 16 14208286 to 14208305 19 - TSS region transcription start site region 140078
Tssr137182 16 14209583 to 14209619 36 + TSS region transcription start site region 137182
Tssr137183 16 14209650 to 14209682 32 + TSS region transcription start site region 137183
Tssr4797 16 14211321 to 14211342 21 + TSS region transcription start site region 4797
Tssr140079 16 14212549 to 14212559 10 - TSS region transcription start site region 140079
Tssr137184 16 14215745 to 14215770 25 + TSS region transcription start site region 137184
Tssr140080 16 14215835 to 14215851 16 - TSS region transcription start site region 140080
Tssr137185 16 14215860 to 14215880 20 + TSS region transcription start site region 137185
Tssr140081 16 14215883 to 14215894 11 - TSS region transcription start site region 140081
Tssr140082 16 14217990 to 14218011 21 - TSS region transcription start site region 140082
Tssr140083 16 14218898 to 14218912 14 - TSS region transcription start site region 140083
Tssr137186 16 14218906 to 14218927 21 + TSS region transcription start site region 137186
Tssr140084 16 14218936 to 14218960 24 - TSS region transcription start site region 140084
Tssr140085 16 14226509 to 14226532 23 - TSS region transcription start site region 140085
Tssr140086 16 14243913 to 14243924 11 - TSS region transcription start site region 140086
Tssr140087 16 14248983 to 14248992 9 - TSS region transcription start site region 140087
Tssr140088 16 14270075 to 14270080 5 - TSS region transcription start site region 140088
Tssr140089 16 14275485 to 14275488 3 - TSS region transcription start site region 140089
Tssr140090 16 14291355 to 14291371 16 - TSS region transcription start site region 140090
Cpgi7984 16 14292335 to 14292608 273 CpG island CpG island 7984
Fopnl 16 14299244 to 14317405 18161 - protein coding gene Fgfr1op N-terminal like
Gm15868 16 14311841 to 14314014 2173 + antisense lncRNA gene predicted gene 15868
Cpgi7985 16 14316878 to 14317672 794 CpG island CpG island 7985
Tssr137187 16 14317281 to 14317290 9 + TSS region transcription start site region 137187
Tssr140091 16 14317319 to 14317370 51 - TSS region transcription start site region 140091
Tssr137188 16 14317441 to 14317473 32 + TSS region transcription start site region 137188
Tssr137189 16 14317485 to 14317502 17 + TSS region transcription start site region 137189
Tssr137190 16 14317516 to 14317533 17 + TSS region transcription start site region 137190
Tssr137191 16 14352842 to 14352889 47 + TSS region transcription start site region 137191
Tssr4798 16 14357622 to 14357642 20 + TSS region transcription start site region 4798
Gm49517 16 14358432 to 14358897 465 + pseudogene predicted gene, 49517
Cpgi7986 16 14361185 to 14362004 819 CpG island CpG island 7986
Tssr137192 16 14361446 to 14361451 5 + TSS region transcription start site region 137192
Abcc1 16 14361512 to 14474879 113367 + protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 1
Tssr137193 16 14361552 to 14361601 49 + TSS region transcription start site region 137193
Tssr137194 16 14365724 to 14365743 19 + TSS region transcription start site region 137194
Tssr137195 16 14370977 to 14370992 15 + TSS region transcription start site region 137195
Tssr137196 16 14373329 to 14373335 6 + TSS region transcription start site region 137196
Tssr137197 16 14373624 to 14373650 26 + TSS region transcription start site region 137197
Gm23116 16 14382807 to 14382873 66 + snRNA gene predicted gene, 23116
Tssr137198 16 14389876 to 14389919 43 + TSS region transcription start site region 137198
Tssr137199 16 14398279 to 14398295 16 + TSS region transcription start site region 137199
Tssr137200 16 14403153 to 14403156 3 + TSS region transcription start site region 137200
D16Ertd780e 16 14434352 to 14434551 199 DNA segment DNA segment, Chr 16, ERATO Doi 780, expressed
Tssr137201 16 14441293 to 14441313 20 + TSS region transcription start site region 137201
Tssr137202 16 14451730 to 14451732 2 + TSS region transcription start site region 137202
Tssr137203 16 14458614 to 14458624 10 + TSS region transcription start site region 137203
Tssr137204 16 14472036 to 14472051 15 + TSS region transcription start site region 137204
Tssr137205 16 14473618 to 14473647 29 + TSS region transcription start site region 137205
Tssr137206 16 14474296 to 14474336 40 + TSS region transcription start site region 137206
Gm49528 16 14479898 to 14483746 3848 - pseudogene predicted gene, 49528
Tssr137207 16 14501872 to 14501883 11 + TSS region transcription start site region 137207
Gm1758 16 14502100 to 14509221 7121 + protein coding gene predicted gene 1758
A630010A05Rik 16 14562317 to 14621284 58967 + protein coding gene RIKEN cDNA A630010A05 gene
Cpgi7987 16 14705435 to 14706414 979 CpG island CpG island 7987
Tssr137208 16 14705575 to 14705590 15 + TSS region transcription start site region 137208
Tssr137209 16 14705595 to 14705618 23 + TSS region transcription start site region 137209
Tssr4799 16 14705619 to 14705635 16 + TSS region transcription start site region 4799
Tssr137210 16 14705653 to 14705668 15 + TSS region transcription start site region 137210
Tssr137211 16 14705832 to 14705858 26 + TSS region transcription start site region 137211
Snai2 16 14705859 to 14709385 3526 + protein coding gene snail family zinc finger 2
Tssr137212 16 14705868 to 14705885 17 + TSS region transcription start site region 137212
Tssr137213 16 14706881 to 14706903 22 + TSS region transcription start site region 137213
Tssr137214 16 14708115 to 14708123 8 + TSS region transcription start site region 137214
Tssr137215 16 14708137 to 14708161 24 + TSS region transcription start site region 137215
Tssr137216 16 14708171 to 14708181 10 + TSS region transcription start site region 137216
Tssr137217 16 14708210 to 14708227 17 + TSS region transcription start site region 137217
Tssr137218 16 14708265 to 14708308 43 + TSS region transcription start site region 137218
Tssr137219 16 14708309 to 14708334 25 + TSS region transcription start site region 137219
Tssr4800 16 14708336 to 14708337 1 + TSS region transcription start site region 4800
Tssr137220 16 14708360 to 14708411 51 + TSS region transcription start site region 137220
Gm49530 16 14790417 to 14791011 594 - pseudogene predicted gene, 49530
Gm25547 16 14807163 to 14807269 106 - snRNA gene predicted gene, 25547
Gm33696 16 14892467 to 14949676 57209 - antisense lncRNA gene predicted gene, 33696
Efcab1 16 14906260 to 14965910 59650 + protein coding gene EF-hand calcium binding domain 1
Tssr137221 16 14906622 to 14906680 58 + TSS region transcription start site region 137221
Gm46561 16 14957623 to 14958505 882 - pseudogene predicted gene, 46561
Gm49536 16 15000322 to 15000489 167 + pseudogene predicted gene, 49536
Cpgi7988 16 15084477 to 15085325 848 CpG island CpG island 7988
F830005K03Rik 16 15092428 to 15095785 3357 - unclassified gene RIKEN cDNA F830005K03 gene
Gm41423 16 15101376 to 15114218 12842 - lncRNA gene predicted gene, 41423
Tssr140092 16 15114100 to 15114132 32 - TSS region transcription start site region 140092
Gm7731 16 15216859 to 15217328 469 - pseudogene predicted gene 7731
Gm5404 16 15218844 to 15221508 2664 + pseudogene predicted gene 5404
Tssr4801 16 15301395 to 15301405 10 - TSS region transcription start site region 4801
Gm21897 16 15317458 to 15318957 1499 + protein coding gene predicted gene, 21897
Tssr137222 16 15345534 to 15345535 1 + TSS region transcription start site region 137222
D16Mit56 16 15365376 to 15365459 83 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 56
Gm6031 16 15426151 to 15427204 1053 + pseudogene predicted gene 6031
Gm7085 16 15452004 to 15452762 758 + pseudogene predicted gene 7085
Gm41424 16 15490234 to 15529006 38772 - lncRNA gene predicted gene, 41424
Ube2v2 16 15550986 to 15594518 43532 - protein coding gene ubiquitin-conjugating enzyme E2 variant 2
Tssr140093 16 15564710 to 15564716 6 - TSS region transcription start site region 140093
Gm49538 16 15587365 to 15588059 694 + pseudogene predicted gene, 49538
Cpgi7989 16 15594020 to 15594665 645 CpG island CpG island 7989
Tssr140094 16 15594473 to 15594503 30 - TSS region transcription start site region 140094
Tssr140095 16 15594509 to 15594531 22 - TSS region transcription start site region 140095
Tssr137223 16 15604480 to 15604488 8 + TSS region transcription start site region 137223
Gm7748 16 15609107 to 15609515 408 + pseudogene predicted gene 7748
Mcm4 16 15623897 to 15637400 13503 - protein coding gene minichromosome maintenance complex component 4
Tssr140096 16 15626273 to 15626277 4 - TSS region transcription start site region 140096
Cpgi7990 16 15636680 to 15638278 1598 CpG island CpG island 7990
Tssr140097 16 15636729 to 15636748 19 - TSS region transcription start site region 140097
Tssr140098 16 15637277 to 15637385 108 - TSS region transcription start site region 140098
Tssr137224 16 15637844 to 15637884 40 + TSS region transcription start site region 137224
Prkdc 16 15637866 to 15842235 204369 + protein coding gene protein kinase, DNA activated, catalytic polypeptide
Tssr137225 16 15705225 to 15705249 24 + TSS region transcription start site region 137225
Tssr140099 16 15736677 to 15736679 2 - TSS region transcription start site region 140099
Gm49511 16 15750923 to 15751192 269 + pseudogene predicted gene, 49511
Mzt2 16 15848441 to 15863364 14923 - protein coding gene mitotic spindle organizing protein 2
Cpgi7991 16 15862453 to 15863570 1117 CpG island CpG island 7991
Tssr140100 16 15862923 to 15862951 28 - TSS region transcription start site region 140100
Tssr140101 16 15863119 to 15863126 7 - TSS region transcription start site region 140101
Tssr140102 16 15863223 to 15863238 15 - TSS region transcription start site region 140102
Tssr140103 16 15863263 to 15863273 10 - TSS region transcription start site region 140103
Tssr140104 16 15863293 to 15863339 46 - TSS region transcription start site region 140104
Tssr140105 16 15863354 to 15863359 5 - TSS region transcription start site region 140105
Gm41425 16 15863448 to 15877478 14030 + lncRNA gene predicted gene, 41425
Gm20082 16 15871829 to 15872159 330 + pseudogene predicted gene, 20082
Tssr140106 16 15885621 to 15885629 8 - TSS region transcription start site region 140106
Cpgi7992 16 15886654 to 15888596 1942 CpG island CpG island 7992
Tssr140107 16 15887131 to 15887161 30 - TSS region transcription start site region 140107
Tssr137226 16 15887278 to 15887292 14 + TSS region transcription start site region 137226
Cebpd 16 15887286 to 15889545 2259 + protein coding gene CCAAT/enhancer binding protein (C/EBP), delta
Tssr137227 16 15887448 to 15887461 13 + TSS region transcription start site region 137227
Tssr137228 16 15887776 to 15887800 24 + TSS region transcription start site region 137228
Tssr137229 16 15888135 to 15888152 17 + TSS region transcription start site region 137229
Spidr 16 15889224 to 16146851 257627 - protein coding gene scaffolding protein involved in DNA repair
Tssr137230 16 15892236 to 15892239 3 + TSS region transcription start site region 137230
Tssr140108 16 15895707 to 15895721 14 - TSS region transcription start site region 140108
Tssr140109 16 15895724 to 15895732 8 - TSS region transcription start site region 140109
Tssr140110 16 15895765 to 15895795 30 - TSS region transcription start site region 140110
Tssr140111 16 15895797 to 15895804 7 - TSS region transcription start site region 140111
nmf219 16 15913052 to 32312179 16399127 heritable phenotypic marker neuroscience mutagenesis facility, 219
D16Mit34 16 15913052 to 15913189 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 34
Rapop1 16 15913189 to 3962915 -11950274 QTL radiation-induced apoptosis 1
Tssr140112 16 15957740 to 15957743 3 - TSS region transcription start site region 140112
Tssr140113 16 15966655 to 15966670 15 - TSS region transcription start site region 140113