Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:13538148-14198131

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Parn 16 13537960 to 13668170 130210 - protein coding gene poly(A)-specific ribonuclease (deadenylation nuclease)
Tssr140042 16 13541231 to 13541267 36 - TSS region transcription start site region 140042
Gm33329 16 13560896 to 13562723 1827 + pseudogene predicted gene, 33329
Tssr140043 16 13611748 to 13611753 5 - TSS region transcription start site region 140043
Cpgi7973 16 13667701 to 13668306 605 CpG island CpG island 7973
Tssr140044 16 13668122 to 13668181 59 - TSS region transcription start site region 140044
Cpgi7974 16 13671717 to 13672648 931 CpG island CpG island 7974
Tssr137140 16 13671858 to 13671918 60 + TSS region transcription start site region 137140
Bfar 16 13671858 to 13703612 31754 + protein coding gene bifunctional apoptosis regulator
Tssr137141 16 13671922 to 13671937 15 + TSS region transcription start site region 137141
3110001I22Rik 16 13671929 to 13678388 6459 + protein coding gene RIKEN cDNA 3110001I22 gene
Tssr137142 16 13671944 to 13671978 34 + TSS region transcription start site region 137142
Tssr137143 16 13671980 to 13672032 52 + TSS region transcription start site region 137143
Tssr137144 16 13672033 to 13672045 12 + TSS region transcription start site region 137144
Tssr140045 16 13672619 to 13672628 9 - TSS region transcription start site region 140045
Tssr140046 16 13672631 to 13672646 15 - TSS region transcription start site region 140046
Tssr137145 16 13702476 to 13702504 28 + TSS region transcription start site region 137145
Tssr137146 16 13702536 to 13702558 22 + TSS region transcription start site region 137146
Tssr137147 16 13702566 to 13702591 25 + TSS region transcription start site region 137147
Tssr137148 16 13702673 to 13702682 9 + TSS region transcription start site region 137148
Tssr137149 16 13703100 to 13703114 14 + TSS region transcription start site region 137149
Pla2g10 16 13715057 to 13730983 15926 - protein coding gene phospholipase A2, group X
Tssr137150 16 13729794 to 13729803 9 + TSS region transcription start site region 137150
Tssr137151 16 13729804 to 13729848 44 + TSS region transcription start site region 137151
Pla2g10os 16 13729836 to 13739471 9635 + antisense lncRNA gene phospholipase A2, group X, opposite strand
Tssr140047 16 13730447 to 13730456 9 - TSS region transcription start site region 140047
Tssr140048 16 13730457 to 13730470 13 - TSS region transcription start site region 140048
Tssr140049 16 13730487 to 13730503 16 - TSS region transcription start site region 140049
Tssr140050 16 13730683 to 13730696 13 - TSS region transcription start site region 140050
Tssr140051 16 13730970 to 13730988 18 - TSS region transcription start site region 140051
Tssr140052 16 13731006 to 13731013 7 - TSS region transcription start site region 140052
Gm49432 16 13737852 to 13739204 1352 - lincRNA gene predicted gene, 49432
Tssr140053 16 13739201 to 13739223 22 - TSS region transcription start site region 140053
Tssr137152 16 13749540 to 13749566 26 + TSS region transcription start site region 137152
Tssr140054 16 13750013 to 13750042 29 - TSS region transcription start site region 140054
Tssr140055 16 13750790 to 13750805 15 - TSS region transcription start site region 140055
Tssr140056 16 13750831 to 13750842 11 - TSS region transcription start site region 140056
Tssr140057 16 13750856 to 13750869 13 - TSS region transcription start site region 140057
Tssr140058 16 13750873 to 13750889 16 - TSS region transcription start site region 140058
Cpgi7975 16 13754407 to 13755376 969 CpG island CpG island 7975
A930007A09Rik 16 13754455 to 13758535 4080 + unclassified non-coding RNA gene RIKEN cDNA A930007A09 gene
Tssr137153 16 13754554 to 13754628 74 + TSS region transcription start site region 137153
Tssr137154 16 13758036 to 13758039 3 + TSS region transcription start site region 137154
Gm6354 16 13778971 to 13780548 1577 - pseudogene predicted gene 6354
Cpgi7976 16 13780397 to 13781084 687 CpG island CpG island 7976
Tssr137155 16 13780505 to 13780523 18 + TSS region transcription start site region 137155
Tssr137156 16 13780600 to 13780623 23 + TSS region transcription start site region 137156
Tssr140059 16 13780635 to 13780657 22 - TSS region transcription start site region 140059
Tssr137157 16 13780699 to 13780755 56 + TSS region transcription start site region 137157
Rrn3 16 13780708 to 13814839 34131 + protein coding gene RRN3 RNA polymerase I transcription factor homolog (yeast)
Tssr137158 16 13780770 to 13780781 11 + TSS region transcription start site region 137158
Tssr137159 16 13813294 to 13813332 38 + TSS region transcription start site region 137159
Tssr137160 16 13813943 to 13813954 11 + TSS region transcription start site region 137160
Cpgi7977 16 13818648 to 13819744 1096 CpG island CpG island 7977
Ntan1 16 13818845 to 13835451 16606 + protein coding gene N-terminal Asn amidase
Tssr137161 16 13818855 to 13818883 28 + TSS region transcription start site region 137161
Gm27734 16 13819232 to 13819320 88 + miRNA gene predicted gene, 27734
Tssr137162 16 13819306 to 13819369 63 + TSS region transcription start site region 137162
Tssr137163 16 13829007 to 13829029 22 + TSS region transcription start site region 137163
Tssr137164 16 13830566 to 13830577 11 + TSS region transcription start site region 137164
Tssr137165 16 13830596 to 13830601 5 + TSS region transcription start site region 137165
Tssr137166 16 13830608 to 13830619 11 + TSS region transcription start site region 137166
Pdxdc1 16 13833148 to 13903131 69983 - protein coding gene pyridoxal-dependent decarboxylase domain containing 1
Tssr137167 16 13863380 to 13863382 2 + TSS region transcription start site region 137167
Gm19150 16 13867596 to 13868096 500 - pseudogene predicted gene, 19150
Cpgi7978 16 13867918 to 13868435 517 CpG island CpG island 7978
Cpgi7979 16 13902257 to 13903484 1227 CpG island CpG island 7979
Tssr140060 16 13902968 to 13902985 17 - TSS region transcription start site region 140060
Tssr140061 16 13902999 to 13903014 15 - TSS region transcription start site region 140061
Tssr140062 16 13903015 to 13903035 20 - TSS region transcription start site region 140062
Tssr140063 16 13903051 to 13903069 18 - TSS region transcription start site region 140063
Tssr140064 16 13903085 to 13903149 64 - TSS region transcription start site region 140064
Tssr137168 16 13903152 to 13903211 59 + TSS region transcription start site region 137168
Mpv17l 16 13903161 to 13949619 46458 + protein coding gene Mpv17 transgene, kidney disease mutant-like
Gm15950 16 13919427 to 13921399 1972 - pseudogene predicted gene 15950
Tssr137169 16 13923987 to 13923992 5 + TSS region transcription start site region 137169
Tssr137170 16 13927737 to 13927768 31 + TSS region transcription start site region 137170
Cpgi7980 16 13940485 to 13941180 695 CpG island CpG island 7980
Tssr137171 16 13940630 to 13940722 92 + TSS region transcription start site region 137171
Tssr137172 16 13940737 to 13940746 9 + TSS region transcription start site region 137172
Gm26213 16 13969348 to 13969457 109 - rRNA gene predicted gene, 26213
Ifitm7 16 13981699 to 13986888 5189 - protein coding gene interferon induced transmembrane protein 7
Tssr137173 16 13986596 to 13986665 69 + TSS region transcription start site region 137173
Bmerb1 16 13986604 to 14101500 114896 + protein coding gene bMERB domain containing 1
Cpgi7981 16 13986802 to 13987200 398 CpG island CpG island 7981
Tssr140065 16 13986835 to 13986854 19 - TSS region transcription start site region 140065
Tssr140066 16 13986874 to 13986906 32 - TSS region transcription start site region 140066
Tssr140067 16 13986913 to 13986933 20 - TSS region transcription start site region 140067
Tssr140068 16 13986944 to 13986950 6 - TSS region transcription start site region 140068
Tssr140069 16 13987221 to 13987244 23 - TSS region transcription start site region 140069
Ppsl 16 13996540 to 13996708 168 QTL plasma P-selectin levels
D16Mit165 16 13996540 to 13996708 168 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 165
Gm15806 16 14010804 to 14011701 897 - pseudogene predicted gene 15806
2900037P16Rik 16 14012922 to 14013122 200 unclassified gene RIKEN cDNA 2900037P16 gene
Gm15807 16 14037902 to 14039009 1107 - pseudogene predicted gene 15807
Gm15808 16 14067403 to 14068006 603 + pseudogene predicted gene 15808
Tssr137174 16 14100035 to 14100046 11 + TSS region transcription start site region 137174
Marf1 16 14109166 to 14159274 50108 - protein coding gene meiosis regulator and mRNA stability 1
Tssr140070 16 14110068 to 14110069 1 - TSS region transcription start site region 140070
Gm27671 16 14128566 to 14128631 65 - miRNA gene predicted gene, 27671
Cpgi7982 16 14158881 to 14159693 812 CpG island CpG island 7982
Tssr140071 16 14159173 to 14159196 23 - TSS region transcription start site region 140071
Tssr140072 16 14159232 to 14159286 54 - TSS region transcription start site region 140072
Mir484 16 14159626 to 14159692 66 + miRNA gene microRNA 484
Tssr137175 16 14159632 to 14159643 11 + TSS region transcription start site region 137175
Cpgi7983 16 14162953 to 14163756 803 CpG island CpG island 7983
Nde1 16 14163275 to 14192928 29653 + protein coding gene nudE neurodevelopment protein 1
Tssr137176 16 14163287 to 14163307 20 + TSS region transcription start site region 137176
Tssr137177 16 14163316 to 14163352 36 + TSS region transcription start site region 137177
Tssr137178 16 14172264 to 14172267 3 + TSS region transcription start site region 137178
Myh11 16 14194535 to 14291372 96837 - protein coding gene myosin, heavy polypeptide 11, smooth muscle
Tssr140073 16 14195132 to 14195151 19 - TSS region transcription start site region 140073