Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:13467033-13877045

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32817 16 13462546 to 13467237 4691 + lncRNA gene predicted gene, 32817
Gm33155 16 13463630 to 13468791 5161 - lncRNA gene predicted gene, 33155
Tssr140040 16 13468750 to 13468785 35 - TSS region transcription start site region 140040
Tssr137139 16 13468855 to 13468866 11 + TSS region transcription start site region 137139
Mir6365 16 13471080 to 13471180 100 - miRNA gene microRNA 6365
2310015D24Rik 16 13514131 to 13520419 6288 - lincRNA gene RIKEN cDNA 2310015D24 gene
Tssr140041 16 13520429 to 13520438 9 - TSS region transcription start site region 140041
Gm25276 16 13531428 to 13531551 123 - snoRNA gene predicted gene, 25276
Parn 16 13537960 to 13668170 130210 - protein coding gene poly(A)-specific ribonuclease (deadenylation nuclease)
Tssr140042 16 13541231 to 13541267 36 - TSS region transcription start site region 140042
Gm33329 16 13560896 to 13562723 1827 + pseudogene predicted gene, 33329
Tssr140043 16 13611748 to 13611753 5 - TSS region transcription start site region 140043
Cpgi7973 16 13667701 to 13668306 605 CpG island CpG island 7973
Tssr140044 16 13668122 to 13668181 59 - TSS region transcription start site region 140044
Cpgi7974 16 13671717 to 13672648 931 CpG island CpG island 7974
Tssr137140 16 13671858 to 13671918 60 + TSS region transcription start site region 137140
Bfar 16 13671858 to 13703612 31754 + protein coding gene bifunctional apoptosis regulator
Tssr137141 16 13671922 to 13671937 15 + TSS region transcription start site region 137141
3110001I22Rik 16 13671929 to 13678388 6459 + protein coding gene RIKEN cDNA 3110001I22 gene
Tssr137142 16 13671944 to 13671978 34 + TSS region transcription start site region 137142
Tssr137143 16 13671980 to 13672032 52 + TSS region transcription start site region 137143
Tssr137144 16 13672033 to 13672045 12 + TSS region transcription start site region 137144
Tssr140045 16 13672619 to 13672628 9 - TSS region transcription start site region 140045
Tssr140046 16 13672631 to 13672646 15 - TSS region transcription start site region 140046
Tssr137145 16 13702476 to 13702504 28 + TSS region transcription start site region 137145
Tssr137146 16 13702536 to 13702558 22 + TSS region transcription start site region 137146
Tssr137147 16 13702566 to 13702591 25 + TSS region transcription start site region 137147
Tssr137148 16 13702673 to 13702682 9 + TSS region transcription start site region 137148
Tssr137149 16 13703100 to 13703114 14 + TSS region transcription start site region 137149
Pla2g10 16 13715057 to 13730983 15926 - protein coding gene phospholipase A2, group X
Tssr137150 16 13729794 to 13729803 9 + TSS region transcription start site region 137150
Tssr137151 16 13729804 to 13729848 44 + TSS region transcription start site region 137151
Pla2g10os 16 13729836 to 13739471 9635 + antisense lncRNA gene phospholipase A2, group X, opposite strand
Tssr140047 16 13730447 to 13730456 9 - TSS region transcription start site region 140047
Tssr140048 16 13730457 to 13730470 13 - TSS region transcription start site region 140048
Tssr140049 16 13730487 to 13730503 16 - TSS region transcription start site region 140049
Tssr140050 16 13730683 to 13730696 13 - TSS region transcription start site region 140050
Tssr140051 16 13730970 to 13730988 18 - TSS region transcription start site region 140051
Tssr140052 16 13731006 to 13731013 7 - TSS region transcription start site region 140052
Gm49432 16 13737852 to 13739204 1352 - lincRNA gene predicted gene, 49432
Tssr140053 16 13739201 to 13739223 22 - TSS region transcription start site region 140053
Tssr137152 16 13749540 to 13749566 26 + TSS region transcription start site region 137152
Tssr140054 16 13750013 to 13750042 29 - TSS region transcription start site region 140054
Tssr140055 16 13750790 to 13750805 15 - TSS region transcription start site region 140055
Tssr140056 16 13750831 to 13750842 11 - TSS region transcription start site region 140056
Tssr140057 16 13750856 to 13750869 13 - TSS region transcription start site region 140057
Tssr140058 16 13750873 to 13750889 16 - TSS region transcription start site region 140058
Cpgi7975 16 13754407 to 13755376 969 CpG island CpG island 7975
A930007A09Rik 16 13754455 to 13758535 4080 + unclassified non-coding RNA gene RIKEN cDNA A930007A09 gene
Tssr137153 16 13754554 to 13754628 74 + TSS region transcription start site region 137153
Tssr137154 16 13758036 to 13758039 3 + TSS region transcription start site region 137154
Gm6354 16 13778971 to 13780548 1577 - pseudogene predicted gene 6354
Cpgi7976 16 13780397 to 13781084 687 CpG island CpG island 7976
Tssr137155 16 13780505 to 13780523 18 + TSS region transcription start site region 137155
Tssr137156 16 13780600 to 13780623 23 + TSS region transcription start site region 137156
Tssr140059 16 13780635 to 13780657 22 - TSS region transcription start site region 140059
Tssr137157 16 13780699 to 13780755 56 + TSS region transcription start site region 137157
Rrn3 16 13780708 to 13814839 34131 + protein coding gene RRN3 RNA polymerase I transcription factor homolog (yeast)
Tssr137158 16 13780770 to 13780781 11 + TSS region transcription start site region 137158
Tssr137159 16 13813294 to 13813332 38 + TSS region transcription start site region 137159
Tssr137160 16 13813943 to 13813954 11 + TSS region transcription start site region 137160
Cpgi7977 16 13818648 to 13819744 1096 CpG island CpG island 7977
Ntan1 16 13818845 to 13835451 16606 + protein coding gene N-terminal Asn amidase
Tssr137161 16 13818855 to 13818883 28 + TSS region transcription start site region 137161
Gm27734 16 13819232 to 13819320 88 + miRNA gene predicted gene, 27734
Tssr137162 16 13819306 to 13819369 63 + TSS region transcription start site region 137162
Tssr137163 16 13829007 to 13829029 22 + TSS region transcription start site region 137163
Tssr137164 16 13830566 to 13830577 11 + TSS region transcription start site region 137164
Tssr137165 16 13830596 to 13830601 5 + TSS region transcription start site region 137165
Tssr137166 16 13830608 to 13830619 11 + TSS region transcription start site region 137166
Pdxdc1 16 13833148 to 13903131 69983 - protein coding gene pyridoxal-dependent decarboxylase domain containing 1
Tssr137167 16 13863380 to 13863382 2 + TSS region transcription start site region 137167
Gm19150 16 13867596 to 13868096 500 - pseudogene predicted gene, 19150
Cpgi7978 16 13867918 to 13868435 517 CpG island CpG island 7978