Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:13100457-14360470

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi7968 16 13109419 to 13110533 1114 CpG island CpG island 7968
Tssr137120 16 13109682 to 13109693 11 + TSS region transcription start site region 137120
Ercc4 16 13109684 to 13150617 40933 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 4
Tssr137121 16 13109796 to 13109812 16 + TSS region transcription start site region 137121
Tssr137122 16 13109889 to 13109954 65 + TSS region transcription start site region 137122
Tssr137123 16 13119242 to 13119264 22 + TSS region transcription start site region 137123
Gm32596 16 13154065 to 13159295 5230 - lncRNA gene predicted gene, 32596
Cpgi7969 16 13160110 to 13160582 472 CpG island CpG island 7969
Tssr140037 16 13189863 to 13189868 5 - TSS region transcription start site region 140037
Tssr137124 16 13247075 to 13247109 34 + TSS region transcription start site region 137124
D16Mit88 16 13248964 to 13249113 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 88
Bbaa19 16 13248964 to 13249113 149 QTL B.burgdorferi-associated arthritis 19
Cpgi7970 16 13255944 to 13257204 1260 CpG island CpG island 7970
Mrtfb 16 13256481 to 13417529 161048 + protein coding gene myocardin related transcription factor B
Tssr137125 16 13256485 to 13256526 41 + TSS region transcription start site region 137125
Tssr137126 16 13266423 to 13266429 6 + TSS region transcription start site region 137126
Tssr137127 16 13322501 to 13322506 5 + TSS region transcription start site region 137127
Tssr137128 16 13348943 to 13348947 4 + TSS region transcription start site region 137128
Tssr137129 16 13358141 to 13358190 49 + TSS region transcription start site region 137129
Tssr137130 16 13358375 to 13358439 64 + TSS region transcription start site region 137130
Tssr137131 16 13358442 to 13358453 11 + TSS region transcription start site region 137131
Tssr137132 16 13358455 to 13358469 14 + TSS region transcription start site region 137132
Gm15738 16 13392408 to 13406588 14180 - antisense lncRNA gene predicted gene 15738
Tssr137133 16 13392419 to 13392420 1 + TSS region transcription start site region 137133
Tssr137134 16 13401073 to 13401089 16 + TSS region transcription start site region 137134
Tssr137135 16 13401100 to 13401114 14 + TSS region transcription start site region 137135
Tssr140038 16 13419847 to 13419851 4 - TSS region transcription start site region 140038
Tssr140039 16 13423722 to 13423743 21 - TSS region transcription start site region 140039
Gm41421 16 13436491 to 13440201 3710 + lncRNA gene predicted gene, 41421
Cpgi7971 16 13436839 to 13438065 1226 CpG island CpG island 7971
n-TTcgt5 16 13437323 to 13437394 71 + tRNA gene nuclear encoded tRNA threonine 5 (anticodon CGT)
Cpgi7972 16 13447310 to 13448795 1485 CpG island CpG island 7972
Tssr137136 16 13447714 to 13447719 5 + TSS region transcription start site region 137136
Tssr137137 16 13447941 to 13447967 26 + TSS region transcription start site region 137137
Tssr137138 16 13447972 to 13447994 22 + TSS region transcription start site region 137138
Mir193b 16 13449523 to 13449601 78 + miRNA gene microRNA 193b
Mir365-1 16 13453840 to 13453926 86 + miRNA gene microRNA 365-1
Gm32817 16 13462546 to 13467237 4691 + lncRNA gene predicted gene, 32817
Gm33155 16 13463630 to 13468791 5161 - lncRNA gene predicted gene, 33155
Tssr140040 16 13468750 to 13468785 35 - TSS region transcription start site region 140040
Tssr137139 16 13468855 to 13468866 11 + TSS region transcription start site region 137139
Mir6365 16 13471080 to 13471180 100 - miRNA gene microRNA 6365
2310015D24Rik 16 13514131 to 13520419 6288 - lincRNA gene RIKEN cDNA 2310015D24 gene
Tssr140041 16 13520429 to 13520438 9 - TSS region transcription start site region 140041
Gm25276 16 13531428 to 13531551 123 - snoRNA gene predicted gene, 25276
Parn 16 13537960 to 13668170 130210 - protein coding gene poly(A)-specific ribonuclease (deadenylation nuclease)
Tssr140042 16 13541231 to 13541267 36 - TSS region transcription start site region 140042
Gm33329 16 13560896 to 13562723 1827 + pseudogene predicted gene, 33329
Tssr140043 16 13611748 to 13611753 5 - TSS region transcription start site region 140043
Cpgi7973 16 13667701 to 13668306 605 CpG island CpG island 7973
Tssr140044 16 13668122 to 13668181 59 - TSS region transcription start site region 140044
Cpgi7974 16 13671717 to 13672648 931 CpG island CpG island 7974
Bfar 16 13671858 to 13703612 31754 + protein coding gene bifunctional apoptosis regulator
Tssr137140 16 13671858 to 13671918 60 + TSS region transcription start site region 137140
Tssr137141 16 13671922 to 13671937 15 + TSS region transcription start site region 137141
3110001I22Rik 16 13671929 to 13678388 6459 + protein coding gene RIKEN cDNA 3110001I22 gene
Tssr137142 16 13671944 to 13671978 34 + TSS region transcription start site region 137142
Tssr137143 16 13671980 to 13672032 52 + TSS region transcription start site region 137143
Tssr137144 16 13672033 to 13672045 12 + TSS region transcription start site region 137144
Tssr140045 16 13672619 to 13672628 9 - TSS region transcription start site region 140045
Tssr140046 16 13672631 to 13672646 15 - TSS region transcription start site region 140046
Tssr137145 16 13702476 to 13702504 28 + TSS region transcription start site region 137145
Tssr137146 16 13702536 to 13702558 22 + TSS region transcription start site region 137146
Tssr137147 16 13702566 to 13702591 25 + TSS region transcription start site region 137147
Tssr137148 16 13702673 to 13702682 9 + TSS region transcription start site region 137148
Tssr137149 16 13703100 to 13703114 14 + TSS region transcription start site region 137149
Pla2g10 16 13715057 to 13730983 15926 - protein coding gene phospholipase A2, group X
Tssr137150 16 13729794 to 13729803 9 + TSS region transcription start site region 137150
Tssr137151 16 13729804 to 13729848 44 + TSS region transcription start site region 137151
Pla2g10os 16 13729836 to 13739471 9635 + antisense lncRNA gene phospholipase A2, group X, opposite strand
Tssr140047 16 13730447 to 13730456 9 - TSS region transcription start site region 140047
Tssr140048 16 13730457 to 13730470 13 - TSS region transcription start site region 140048
Tssr140049 16 13730487 to 13730503 16 - TSS region transcription start site region 140049
Tssr140050 16 13730683 to 13730696 13 - TSS region transcription start site region 140050
Tssr140051 16 13730970 to 13730988 18 - TSS region transcription start site region 140051
Tssr140052 16 13731006 to 13731013 7 - TSS region transcription start site region 140052
Gm49432 16 13737852 to 13739204 1352 - lincRNA gene predicted gene, 49432
Tssr140053 16 13739201 to 13739223 22 - TSS region transcription start site region 140053
Tssr137152 16 13749540 to 13749566 26 + TSS region transcription start site region 137152
Tssr140054 16 13750013 to 13750042 29 - TSS region transcription start site region 140054
Tssr140055 16 13750790 to 13750805 15 - TSS region transcription start site region 140055
Tssr140056 16 13750831 to 13750842 11 - TSS region transcription start site region 140056
Tssr140057 16 13750856 to 13750869 13 - TSS region transcription start site region 140057
Tssr140058 16 13750873 to 13750889 16 - TSS region transcription start site region 140058
Cpgi7975 16 13754407 to 13755376 969 CpG island CpG island 7975
A930007A09Rik 16 13754455 to 13758535 4080 + unclassified non-coding RNA gene RIKEN cDNA A930007A09 gene
Tssr137153 16 13754554 to 13754628 74 + TSS region transcription start site region 137153
Tssr137154 16 13758036 to 13758039 3 + TSS region transcription start site region 137154
Gm6354 16 13778971 to 13780548 1577 - pseudogene predicted gene 6354
Cpgi7976 16 13780397 to 13781084 687 CpG island CpG island 7976
Tssr137155 16 13780505 to 13780523 18 + TSS region transcription start site region 137155
Tssr137156 16 13780600 to 13780623 23 + TSS region transcription start site region 137156
Tssr140059 16 13780635 to 13780657 22 - TSS region transcription start site region 140059
Tssr137157 16 13780699 to 13780755 56 + TSS region transcription start site region 137157
Rrn3 16 13780708 to 13814839 34131 + protein coding gene RRN3 RNA polymerase I transcription factor homolog (yeast)
Tssr137158 16 13780770 to 13780781 11 + TSS region transcription start site region 137158
Tssr137159 16 13813294 to 13813332 38 + TSS region transcription start site region 137159
Tssr137160 16 13813943 to 13813954 11 + TSS region transcription start site region 137160
Cpgi7977 16 13818648 to 13819744 1096 CpG island CpG island 7977
Ntan1 16 13818845 to 13835451 16606 + protein coding gene N-terminal Asn amidase
Tssr137161 16 13818855 to 13818883 28 + TSS region transcription start site region 137161
Gm27734 16 13819232 to 13819320 88 + miRNA gene predicted gene, 27734
Tssr137162 16 13819306 to 13819369 63 + TSS region transcription start site region 137162
Tssr137163 16 13829007 to 13829029 22 + TSS region transcription start site region 137163
Tssr137164 16 13830566 to 13830577 11 + TSS region transcription start site region 137164
Tssr137165 16 13830596 to 13830601 5 + TSS region transcription start site region 137165
Tssr137166 16 13830608 to 13830619 11 + TSS region transcription start site region 137166
Pdxdc1 16 13833148 to 13903131 69983 - protein coding gene pyridoxal-dependent decarboxylase domain containing 1
Tssr137167 16 13863380 to 13863382 2 + TSS region transcription start site region 137167
Gm19150 16 13867596 to 13868096 500 - pseudogene predicted gene, 19150
Cpgi7978 16 13867918 to 13868435 517 CpG island CpG island 7978
Cpgi7979 16 13902257 to 13903484 1227 CpG island CpG island 7979
Tssr140060 16 13902968 to 13902985 17 - TSS region transcription start site region 140060
Tssr140061 16 13902999 to 13903014 15 - TSS region transcription start site region 140061
Tssr140062 16 13903015 to 13903035 20 - TSS region transcription start site region 140062
Tssr140063 16 13903051 to 13903069 18 - TSS region transcription start site region 140063
Tssr140064 16 13903085 to 13903149 64 - TSS region transcription start site region 140064
Tssr137168 16 13903152 to 13903211 59 + TSS region transcription start site region 137168
Mpv17l 16 13903161 to 13949619 46458 + protein coding gene Mpv17 transgene, kidney disease mutant-like
Gm15950 16 13919427 to 13921399 1972 - pseudogene predicted gene 15950
Tssr137169 16 13923987 to 13923992 5 + TSS region transcription start site region 137169
Tssr137170 16 13927737 to 13927768 31 + TSS region transcription start site region 137170
Cpgi7980 16 13940485 to 13941180 695 CpG island CpG island 7980
Tssr137171 16 13940630 to 13940722 92 + TSS region transcription start site region 137171
Tssr137172 16 13940737 to 13940746 9 + TSS region transcription start site region 137172
Gm26213 16 13969348 to 13969457 109 - rRNA gene predicted gene, 26213
Ifitm7 16 13981699 to 13986888 5189 - protein coding gene interferon induced transmembrane protein 7
Tssr137173 16 13986596 to 13986665 69 + TSS region transcription start site region 137173
Bmerb1 16 13986604 to 14101500 114896 + protein coding gene bMERB domain containing 1
Cpgi7981 16 13986802 to 13987200 398 CpG island CpG island 7981
Tssr140065 16 13986835 to 13986854 19 - TSS region transcription start site region 140065
Tssr140066 16 13986874 to 13986906 32 - TSS region transcription start site region 140066
Tssr140067 16 13986913 to 13986933 20 - TSS region transcription start site region 140067
Tssr140068 16 13986944 to 13986950 6 - TSS region transcription start site region 140068
Tssr140069 16 13987221 to 13987244 23 - TSS region transcription start site region 140069
Ppsl 16 13996540 to 13996708 168 QTL plasma P-selectin levels
D16Mit165 16 13996540 to 13996708 168 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 165
Gm15806 16 14010804 to 14011701 897 - pseudogene predicted gene 15806
2900037P16Rik 16 14012922 to 14013122 200 unclassified gene RIKEN cDNA 2900037P16 gene
Gm15807 16 14037902 to 14039009 1107 - pseudogene predicted gene 15807
Gm15808 16 14067403 to 14068006 603 + pseudogene predicted gene 15808
Tssr137174 16 14100035 to 14100046 11 + TSS region transcription start site region 137174
Marf1 16 14109166 to 14159274 50108 - protein coding gene meiosis regulator and mRNA stability 1
Tssr140070 16 14110068 to 14110069 1 - TSS region transcription start site region 140070
Gm27671 16 14128566 to 14128631 65 - miRNA gene predicted gene, 27671
Cpgi7982 16 14158881 to 14159693 812 CpG island CpG island 7982
Tssr140071 16 14159173 to 14159196 23 - TSS region transcription start site region 140071
Tssr140072 16 14159232 to 14159286 54 - TSS region transcription start site region 140072
Mir484 16 14159626 to 14159692 66 + miRNA gene microRNA 484
Tssr137175 16 14159632 to 14159643 11 + TSS region transcription start site region 137175
Cpgi7983 16 14162953 to 14163756 803 CpG island CpG island 7983
Nde1 16 14163275 to 14192928 29653 + protein coding gene nudE neurodevelopment protein 1
Tssr137176 16 14163287 to 14163307 20 + TSS region transcription start site region 137176
Tssr137177 16 14163316 to 14163352 36 + TSS region transcription start site region 137177
Tssr137178 16 14172264 to 14172267 3 + TSS region transcription start site region 137178
Myh11 16 14194535 to 14291372 96837 - protein coding gene myosin, heavy polypeptide 11, smooth muscle
Tssr140073 16 14195132 to 14195151 19 - TSS region transcription start site region 140073
Tssr140074 16 14202101 to 14202110 9 - TSS region transcription start site region 140074
Tssr140075 16 14203195 to 14203209 14 - TSS region transcription start site region 140075
Tssr140076 16 14204701 to 14204712 11 - TSS region transcription start site region 140076
Tssr140077 16 14205134 to 14205140 6 - TSS region transcription start site region 140077
Tssr137179 16 14205500 to 14205529 29 + TSS region transcription start site region 137179
Tssr137180 16 14207646 to 14207653 7 + TSS region transcription start site region 137180
Tssr137181 16 14207686 to 14207728 42 + TSS region transcription start site region 137181
Tssr140078 16 14208286 to 14208305 19 - TSS region transcription start site region 140078
Tssr137182 16 14209583 to 14209619 36 + TSS region transcription start site region 137182
Tssr137183 16 14209650 to 14209682 32 + TSS region transcription start site region 137183
Tssr4797 16 14211321 to 14211342 21 + TSS region transcription start site region 4797
Tssr140079 16 14212549 to 14212559 10 - TSS region transcription start site region 140079
Tssr137184 16 14215745 to 14215770 25 + TSS region transcription start site region 137184
Tssr140080 16 14215835 to 14215851 16 - TSS region transcription start site region 140080
Tssr137185 16 14215860 to 14215880 20 + TSS region transcription start site region 137185
Tssr140081 16 14215883 to 14215894 11 - TSS region transcription start site region 140081
Tssr140082 16 14217990 to 14218011 21 - TSS region transcription start site region 140082
Tssr140083 16 14218898 to 14218912 14 - TSS region transcription start site region 140083
Tssr137186 16 14218906 to 14218927 21 + TSS region transcription start site region 137186
Tssr140084 16 14218936 to 14218960 24 - TSS region transcription start site region 140084
Tssr140085 16 14226509 to 14226532 23 - TSS region transcription start site region 140085
Tssr140086 16 14243913 to 14243924 11 - TSS region transcription start site region 140086
Tssr140087 16 14248983 to 14248992 9 - TSS region transcription start site region 140087
Tssr140088 16 14270075 to 14270080 5 - TSS region transcription start site region 140088
Tssr140089 16 14275485 to 14275488 3 - TSS region transcription start site region 140089
Tssr140090 16 14291355 to 14291371 16 - TSS region transcription start site region 140090
Cpgi7984 16 14292335 to 14292608 273 CpG island CpG island 7984
Fopnl 16 14299244 to 14317405 18161 - protein coding gene Fgfr1op N-terminal like
Gm15868 16 14311841 to 14314014 2173 + antisense lncRNA gene predicted gene 15868
Cpgi7985 16 14316878 to 14317672 794 CpG island CpG island 7985
Tssr137187 16 14317281 to 14317290 9 + TSS region transcription start site region 137187
Tssr140091 16 14317319 to 14317370 51 - TSS region transcription start site region 140091
Tssr137188 16 14317441 to 14317473 32 + TSS region transcription start site region 137188
Tssr137189 16 14317485 to 14317502 17 + TSS region transcription start site region 137189
Tssr137190 16 14317516 to 14317533 17 + TSS region transcription start site region 137190
Tssr137191 16 14352842 to 14352889 47 + TSS region transcription start site region 137191
Tssr4798 16 14357622 to 14357642 20 + TSS region transcription start site region 4798
Gm49517 16 14358432 to 14358897 465 + pseudogene predicted gene, 49517