Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:12140894-13750907

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shisa9 16 11984113 to 12270902 286789 + protein coding gene shisa family member 9
Tssr137116 16 12261264 to 12261266 2 + TSS region transcription start site region 137116
Gm19571 16 12381130 to 12381502 372 - pseudogene predicted gene, 19571
C87114 16 12408283 to 12409177 894 - pseudogene expressed sequence C87114
Tssr137117 16 12450354 to 12450355 1 + TSS region transcription start site region 137117
Gm45919 16 12563416 to 12684245 120829 - lncRNA gene predicted gene, 45919
4930414F18Rik 16 12629084 to 12945935 316851 - lincRNA gene RIKEN cDNA 4930414F18 gene
Tssr140033 16 12690871 to 12690874 3 - TSS region transcription start site region 140033
Gm38619 16 12704348 to 12711595 7247 + lincRNA gene predicted gene, 38619
Tssr137118 16 12704399 to 12704416 17 + TSS region transcription start site region 137118
Gm6327 16 12760032 to 12761366 1334 - pseudogene predicted gene 6327
Tssr140034 16 12762025 to 12762030 5 - TSS region transcription start site region 140034
Tssr137119 16 12811385 to 12811408 23 + TSS region transcription start site region 137119
1700003L19Rik 16 12811390 to 12848653 37263 + lincRNA gene RIKEN cDNA 1700003L19 gene
Lmr23 16 12856193 to 12856336 143 QTL leishmaniasis resistance 23
D16Mit73 16 12856193 to 12856336 143 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 73
Cpgi7967 16 12931852 to 12932012 160 CpG island CpG island 7967
Tssr140035 16 12945894 to 12945907 13 - TSS region transcription start site region 140035
Tssr140036 16 12945926 to 12945939 13 - TSS region transcription start site region 140036
Gm6332 16 12950781 to 12951463 682 - pseudogene predicted gene 6332
Cpgi7968 16 13109419 to 13110533 1114 CpG island CpG island 7968
Tssr137120 16 13109682 to 13109693 11 + TSS region transcription start site region 137120
Ercc4 16 13109684 to 13150617 40933 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 4
Tssr137121 16 13109796 to 13109812 16 + TSS region transcription start site region 137121
Tssr137122 16 13109889 to 13109954 65 + TSS region transcription start site region 137122
Tssr137123 16 13119242 to 13119264 22 + TSS region transcription start site region 137123
Gm32596 16 13154065 to 13159295 5230 - lncRNA gene predicted gene, 32596
Cpgi7969 16 13160110 to 13160582 472 CpG island CpG island 7969
Tssr140037 16 13189863 to 13189868 5 - TSS region transcription start site region 140037
Tssr137124 16 13247075 to 13247109 34 + TSS region transcription start site region 137124
Bbaa19 16 13248964 to 13249113 149 QTL B.burgdorferi-associated arthritis 19
D16Mit88 16 13248964 to 13249113 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 88
Cpgi7970 16 13255944 to 13257204 1260 CpG island CpG island 7970
Mrtfb 16 13256481 to 13417529 161048 + protein coding gene myocardin related transcription factor B
Tssr137125 16 13256485 to 13256526 41 + TSS region transcription start site region 137125
Tssr137126 16 13266423 to 13266429 6 + TSS region transcription start site region 137126
Tssr137127 16 13322501 to 13322506 5 + TSS region transcription start site region 137127
Tssr137128 16 13348943 to 13348947 4 + TSS region transcription start site region 137128
Tssr137129 16 13358141 to 13358190 49 + TSS region transcription start site region 137129
Tssr137130 16 13358375 to 13358439 64 + TSS region transcription start site region 137130
Tssr137131 16 13358442 to 13358453 11 + TSS region transcription start site region 137131
Tssr137132 16 13358455 to 13358469 14 + TSS region transcription start site region 137132
Gm15738 16 13392408 to 13406588 14180 - antisense lncRNA gene predicted gene 15738
Tssr137133 16 13392419 to 13392420 1 + TSS region transcription start site region 137133
Tssr137134 16 13401073 to 13401089 16 + TSS region transcription start site region 137134
Tssr137135 16 13401100 to 13401114 14 + TSS region transcription start site region 137135
Tssr140038 16 13419847 to 13419851 4 - TSS region transcription start site region 140038
Tssr140039 16 13423722 to 13423743 21 - TSS region transcription start site region 140039
Gm41421 16 13436491 to 13440201 3710 + lncRNA gene predicted gene, 41421
Cpgi7971 16 13436839 to 13438065 1226 CpG island CpG island 7971
n-TTcgt5 16 13437323 to 13437394 71 + tRNA gene nuclear encoded tRNA threonine 5 (anticodon CGT)
Cpgi7972 16 13447310 to 13448795 1485 CpG island CpG island 7972
Tssr137136 16 13447714 to 13447719 5 + TSS region transcription start site region 137136
Tssr137137 16 13447941 to 13447967 26 + TSS region transcription start site region 137137
Tssr137138 16 13447972 to 13447994 22 + TSS region transcription start site region 137138
Mir193b 16 13449523 to 13449601 78 + miRNA gene microRNA 193b
Mir365-1 16 13453840 to 13453926 86 + miRNA gene microRNA 365-1
Gm32817 16 13462546 to 13467237 4691 + lncRNA gene predicted gene, 32817
Gm33155 16 13463630 to 13468791 5161 - lncRNA gene predicted gene, 33155
Tssr140040 16 13468750 to 13468785 35 - TSS region transcription start site region 140040
Tssr137139 16 13468855 to 13468866 11 + TSS region transcription start site region 137139
Mir6365 16 13471080 to 13471180 100 - miRNA gene microRNA 6365
2310015D24Rik 16 13514131 to 13520419 6288 - lincRNA gene RIKEN cDNA 2310015D24 gene
Tssr140041 16 13520429 to 13520438 9 - TSS region transcription start site region 140041
Gm25276 16 13531428 to 13531551 123 - snoRNA gene predicted gene, 25276
Parn 16 13537960 to 13668170 130210 - protein coding gene poly(A)-specific ribonuclease (deadenylation nuclease)
Tssr140042 16 13541231 to 13541267 36 - TSS region transcription start site region 140042
Gm33329 16 13560896 to 13562723 1827 + pseudogene predicted gene, 33329
Tssr140043 16 13611748 to 13611753 5 - TSS region transcription start site region 140043
Cpgi7973 16 13667701 to 13668306 605 CpG island CpG island 7973
Tssr140044 16 13668122 to 13668181 59 - TSS region transcription start site region 140044
Cpgi7974 16 13671717 to 13672648 931 CpG island CpG island 7974
Bfar 16 13671858 to 13703612 31754 + protein coding gene bifunctional apoptosis regulator
Tssr137140 16 13671858 to 13671918 60 + TSS region transcription start site region 137140
Tssr137141 16 13671922 to 13671937 15 + TSS region transcription start site region 137141
3110001I22Rik 16 13671929 to 13678388 6459 + protein coding gene RIKEN cDNA 3110001I22 gene
Tssr137142 16 13671944 to 13671978 34 + TSS region transcription start site region 137142
Tssr137143 16 13671980 to 13672032 52 + TSS region transcription start site region 137143
Tssr137144 16 13672033 to 13672045 12 + TSS region transcription start site region 137144
Tssr140045 16 13672619 to 13672628 9 - TSS region transcription start site region 140045
Tssr140046 16 13672631 to 13672646 15 - TSS region transcription start site region 140046
Tssr137145 16 13702476 to 13702504 28 + TSS region transcription start site region 137145
Tssr137146 16 13702536 to 13702558 22 + TSS region transcription start site region 137146
Tssr137147 16 13702566 to 13702591 25 + TSS region transcription start site region 137147
Tssr137148 16 13702673 to 13702682 9 + TSS region transcription start site region 137148
Tssr137149 16 13703100 to 13703114 14 + TSS region transcription start site region 137149
Pla2g10 16 13715057 to 13730983 15926 - protein coding gene phospholipase A2, group X
Tssr137150 16 13729794 to 13729803 9 + TSS region transcription start site region 137150
Tssr137151 16 13729804 to 13729848 44 + TSS region transcription start site region 137151
Pla2g10os 16 13729836 to 13739471 9635 + antisense lncRNA gene phospholipase A2, group X, opposite strand
Tssr140047 16 13730447 to 13730456 9 - TSS region transcription start site region 140047
Tssr140048 16 13730457 to 13730470 13 - TSS region transcription start site region 140048
Tssr140049 16 13730487 to 13730503 16 - TSS region transcription start site region 140049
Tssr140050 16 13730683 to 13730696 13 - TSS region transcription start site region 140050
Tssr140051 16 13730970 to 13730988 18 - TSS region transcription start site region 140051
Tssr140052 16 13731006 to 13731013 7 - TSS region transcription start site region 140052
Gm49432 16 13737852 to 13739204 1352 - lincRNA gene predicted gene, 49432
Tssr140053 16 13739201 to 13739223 22 - TSS region transcription start site region 140053
Tssr137152 16 13749540 to 13749566 26 + TSS region transcription start site region 137152
Tssr140054 16 13750013 to 13750042 29 - TSS region transcription start site region 140054
Tssr140055 16 13750790 to 13750805 15 - TSS region transcription start site region 140055
Tssr140056 16 13750831 to 13750842 11 - TSS region transcription start site region 140056
Tssr140057 16 13750856 to 13750869 13 - TSS region transcription start site region 140057
Tssr140058 16 13750873 to 13750889 16 - TSS region transcription start site region 140058