Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:12059348-13356595

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shisa9 16 11984113 to 12270902 286789 + protein coding gene shisa family member 9
D16Mit100 16 12095172 to 12095314 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 100
Tssr137116 16 12261264 to 12261266 2 + TSS region transcription start site region 137116
Gm19571 16 12381130 to 12381502 372 - pseudogene predicted gene, 19571
C87114 16 12408283 to 12409177 894 - pseudogene expressed sequence C87114
Tssr137117 16 12450354 to 12450355 1 + TSS region transcription start site region 137117
Gm45919 16 12563416 to 12684245 120829 - lncRNA gene predicted gene, 45919
4930414F18Rik 16 12629084 to 12945935 316851 - lincRNA gene RIKEN cDNA 4930414F18 gene
Tssr140033 16 12690871 to 12690874 3 - TSS region transcription start site region 140033
Gm38619 16 12704348 to 12711595 7247 + lincRNA gene predicted gene, 38619
Tssr137118 16 12704399 to 12704416 17 + TSS region transcription start site region 137118
Gm6327 16 12760032 to 12761366 1334 - pseudogene predicted gene 6327
Tssr140034 16 12762025 to 12762030 5 - TSS region transcription start site region 140034
Tssr137119 16 12811385 to 12811408 23 + TSS region transcription start site region 137119
1700003L19Rik 16 12811390 to 12848653 37263 + lincRNA gene RIKEN cDNA 1700003L19 gene
D16Mit73 16 12856193 to 12856336 143 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 73
Lmr23 16 12856193 to 12856336 143 QTL leishmaniasis resistance 23
Cpgi7967 16 12931852 to 12932012 160 CpG island CpG island 7967
Tssr140035 16 12945894 to 12945907 13 - TSS region transcription start site region 140035
Tssr140036 16 12945926 to 12945939 13 - TSS region transcription start site region 140036
Gm6332 16 12950781 to 12951463 682 - pseudogene predicted gene 6332
Cpgi7968 16 13109419 to 13110533 1114 CpG island CpG island 7968
Tssr137120 16 13109682 to 13109693 11 + TSS region transcription start site region 137120
Ercc4 16 13109684 to 13150617 40933 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 4
Tssr137121 16 13109796 to 13109812 16 + TSS region transcription start site region 137121
Tssr137122 16 13109889 to 13109954 65 + TSS region transcription start site region 137122
Tssr137123 16 13119242 to 13119264 22 + TSS region transcription start site region 137123
Gm32596 16 13154065 to 13159295 5230 - lncRNA gene predicted gene, 32596
Cpgi7969 16 13160110 to 13160582 472 CpG island CpG island 7969
Tssr140037 16 13189863 to 13189868 5 - TSS region transcription start site region 140037
Tssr137124 16 13247075 to 13247109 34 + TSS region transcription start site region 137124
D16Mit88 16 13248964 to 13249113 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 88
Bbaa19 16 13248964 to 13249113 149 QTL B.burgdorferi-associated arthritis 19
Cpgi7970 16 13255944 to 13257204 1260 CpG island CpG island 7970
Mrtfb 16 13256481 to 13417529 161048 + protein coding gene myocardin related transcription factor B
Tssr137125 16 13256485 to 13256526 41 + TSS region transcription start site region 137125
Tssr137126 16 13266423 to 13266429 6 + TSS region transcription start site region 137126
Tssr137127 16 13322501 to 13322506 5 + TSS region transcription start site region 137127
Tssr137128 16 13348943 to 13348947 4 + TSS region transcription start site region 137128