Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:11706264-12816266

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx29 16 11322908 to 11755472 432564 + protein coding gene sorting nexin 29
Tssr137111 16 11778448 to 11778465 17 + TSS region transcription start site region 137111
4833415N18Rik 16 11779702 to 11781501 1799 + lincRNA gene RIKEN cDNA 4833415N18 gene
Cpped1 16 11803721 to 11909445 105724 - protein coding gene calcineurin-like phosphoesterase domain containing 1
Tssr140028 16 11804985 to 11804998 13 - TSS region transcription start site region 140028
Gm9961 16 11901364 to 11930594 29230 + lincRNA gene predicted gene 9961
Cpgi7965 16 11909004 to 11909468 464 CpG island CpG island 7965
Tssr140029 16 11909337 to 11909353 16 - TSS region transcription start site region 140029
Tssr140030 16 11909356 to 11909379 23 - TSS region transcription start site region 140030
Tssr140031 16 11909383 to 11909390 7 - TSS region transcription start site region 140031
Tssr140032 16 11909405 to 11909429 24 - TSS region transcription start site region 140032
Gm32278 16 11978665 to 11983997 5332 - lncRNA gene predicted gene, 32278
Cpgi7966 16 11983142 to 11985374 2232 CpG island CpG island 7966
Tssr137112 16 11984107 to 11984153 46 + TSS region transcription start site region 137112
Shisa9 16 11984113 to 12270902 286789 + protein coding gene shisa family member 9
Tssr137113 16 11984156 to 11984170 14 + TSS region transcription start site region 137113
Tssr137114 16 11984361 to 11984382 21 + TSS region transcription start site region 137114
Tssr137115 16 11984389 to 11984422 33 + TSS region transcription start site region 137115
D16Mit100 16 12095172 to 12095314 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 100
Tssr137116 16 12261264 to 12261266 2 + TSS region transcription start site region 137116
Gm19571 16 12381130 to 12381502 372 - pseudogene predicted gene, 19571
C87114 16 12408283 to 12409177 894 - pseudogene expressed sequence C87114
Tssr137117 16 12450354 to 12450355 1 + TSS region transcription start site region 137117
Gm45919 16 12563416 to 12684245 120829 - lncRNA gene predicted gene, 45919
4930414F18Rik 16 12629084 to 12945935 316851 - lincRNA gene RIKEN cDNA 4930414F18 gene
Tssr140033 16 12690871 to 12690874 3 - TSS region transcription start site region 140033
Gm38619 16 12704348 to 12711595 7247 + lincRNA gene predicted gene, 38619
Tssr137118 16 12704399 to 12704416 17 + TSS region transcription start site region 137118
Gm6327 16 12760032 to 12761366 1334 - pseudogene predicted gene 6327
Tssr140034 16 12762025 to 12762030 5 - TSS region transcription start site region 140034
Tssr137119 16 12811385 to 12811408 23 + TSS region transcription start site region 137119
1700003L19Rik 16 12811390 to 12848653 37263 + lincRNA gene RIKEN cDNA 1700003L19 gene