Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:11244107-12724153

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gspt1 16 11219292 to 11254325 35033 - protein coding gene G1 to S phase transition 1
Cpgi7963 16 11253204 to 11254840 1636 CpG island CpG island 7963
Tssr140010 16 11253766 to 11253771 5 - TSS region transcription start site region 140010
Tssr140011 16 11253982 to 11254045 63 - TSS region transcription start site region 140011
Tssr140012 16 11254096 to 11254107 11 - TSS region transcription start site region 140012
Tssr140013 16 11254145 to 11254158 13 - TSS region transcription start site region 140013
Tssr140014 16 11254161 to 11254246 85 - TSS region transcription start site region 140014
Tssr140015 16 11254250 to 11254264 14 - TSS region transcription start site region 140015
Tssr140016 16 11254268 to 11254303 35 - TSS region transcription start site region 140016
Tssr140017 16 11254309 to 11254336 27 - TSS region transcription start site region 140017
Tssr140018 16 11254342 to 11254352 10 - TSS region transcription start site region 140018
Tssr140019 16 11254366 to 11254375 9 - TSS region transcription start site region 140019
Mir1945 16 11254368 to 11254445 77 - miRNA gene microRNA 1945
Tssr140020 16 11254432 to 11254448 16 - TSS region transcription start site region 140020
Tssr137081 16 11254492 to 11254519 27 + TSS region transcription start site region 137081
Tssr140021 16 11288292 to 11288318 26 - TSS region transcription start site region 140021
Tnfrsf17 16 11313812 to 11320074 6262 + protein coding gene tumor necrosis factor receptor superfamily, member 17
Cpgi7964 16 11322557 to 11323612 1055 CpG island CpG island 7964
Tssr137082 16 11322876 to 11322911 35 + TSS region transcription start site region 137082
Snx29 16 11322908 to 11755472 432564 + protein coding gene sorting nexin 29
Tssr137083 16 11322915 to 11322930 15 + TSS region transcription start site region 137083
Tssr140022 16 11343405 to 11343450 45 - TSS region transcription start site region 140022
Tssr137084 16 11361078 to 11361096 18 + TSS region transcription start site region 137084
Tssr140023 16 11365773 to 11365778 5 - TSS region transcription start site region 140023
A7300091P13Rik 16 11387259 to 11389777 2518 unclassified gene RIKEN cDNA A7300091P13 gene
Tssr137085 16 11387593 to 11387607 14 + TSS region transcription start site region 137085
Gm18868 16 11393047 to 11394840 1793 + pseudogene predicted gene, 18868
Tssr137086 16 11397099 to 11397104 5 + TSS region transcription start site region 137086
Tssr137087 16 11397193 to 11397217 24 + TSS region transcription start site region 137087
Tssr137088 16 11398269 to 11398296 27 + TSS region transcription start site region 137088
Tssr137089 16 11399597 to 11399611 14 + TSS region transcription start site region 137089
Tssr137090 16 11399620 to 11399639 19 + TSS region transcription start site region 137090
Tssr137091 16 11401172 to 11401193 21 + TSS region transcription start site region 137091
Tssr137092 16 11405676 to 11405713 37 + TSS region transcription start site region 137092
Tssr137093 16 11406618 to 11406675 57 + TSS region transcription start site region 137093
Tssr137094 16 11406777 to 11406789 12 + TSS region transcription start site region 137094
Tssr137095 16 11420489 to 11420576 87 + TSS region transcription start site region 137095
Tssr137096 16 11420586 to 11420598 12 + TSS region transcription start site region 137096
Tssr137097 16 11420693 to 11420724 31 + TSS region transcription start site region 137097
Tssr137098 16 11420726 to 11420744 18 + TSS region transcription start site region 137098
Tssr140024 16 11442592 to 11442600 8 - TSS region transcription start site region 140024
Tssr137099 16 11447285 to 11447296 11 + TSS region transcription start site region 137099
Tssr137100 16 11447305 to 11447314 9 + TSS region transcription start site region 137100
Tssr140025 16 11456298 to 11456300 2 - TSS region transcription start site region 140025
Tssr4796 16 11456610 to 11456626 16 + TSS region transcription start site region 4796
Tssr140026 16 11461630 to 11461636 6 - TSS region transcription start site region 140026
Tssr137101 16 11461830 to 11461842 12 + TSS region transcription start site region 137101
Tssr137102 16 11461845 to 11461862 17 + TSS region transcription start site region 137102
Tssr137103 16 11461905 to 11461912 7 + TSS region transcription start site region 137103
Gm15897 16 11494821 to 11496306 1485 - pseudogene predicted gene 15897
Tssr137104 16 11500705 to 11500712 7 + TSS region transcription start site region 137104
5830487K18Rik 16 11549741 to 11551159 1418 unclassified gene RIKEN cDNA 5830487K18 gene
Gm32100 16 11583706 to 11588531 4825 + lncRNA gene predicted gene, 32100
Tssr137105 16 11584508 to 11584513 5 + TSS region transcription start site region 137105
Tssr137106 16 11615880 to 11615902 22 + TSS region transcription start site region 137106
Dice1 16 11616382 to 11616494 112 QTL determination of interleukin 4 commitment 1
D16Mit81 16 11616382 to 11616494 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 81
Tssr137107 16 11632081 to 11632085 4 + TSS region transcription start site region 137107
Tssr140027 16 11633171 to 11633177 6 - TSS region transcription start site region 140027
Tssr137108 16 11644708 to 11644749 41 + TSS region transcription start site region 137108
Tssr137109 16 11656117 to 11656137 20 + TSS region transcription start site region 137109
Tssr137110 16 11656144 to 11656155 11 + TSS region transcription start site region 137110
Gm4279 16 11688169 to 11691857 3688 - antisense lncRNA gene predicted gene 4279
Tssr137111 16 11778448 to 11778465 17 + TSS region transcription start site region 137111
4833415N18Rik 16 11779702 to 11781501 1799 + lincRNA gene RIKEN cDNA 4833415N18 gene
Cpped1 16 11803721 to 11909445 105724 - protein coding gene calcineurin-like phosphoesterase domain containing 1
Tssr140028 16 11804985 to 11804998 13 - TSS region transcription start site region 140028
Gm9961 16 11901364 to 11930594 29230 + lincRNA gene predicted gene 9961
Cpgi7965 16 11909004 to 11909468 464 CpG island CpG island 7965
Tssr140029 16 11909337 to 11909353 16 - TSS region transcription start site region 140029
Tssr140030 16 11909356 to 11909379 23 - TSS region transcription start site region 140030
Tssr140031 16 11909383 to 11909390 7 - TSS region transcription start site region 140031
Tssr140032 16 11909405 to 11909429 24 - TSS region transcription start site region 140032
Gm32278 16 11978665 to 11983997 5332 - lncRNA gene predicted gene, 32278
Cpgi7966 16 11983142 to 11985374 2232 CpG island CpG island 7966
Tssr137112 16 11984107 to 11984153 46 + TSS region transcription start site region 137112
Shisa9 16 11984113 to 12270902 286789 + protein coding gene shisa family member 9
Tssr137113 16 11984156 to 11984170 14 + TSS region transcription start site region 137113
Tssr137114 16 11984361 to 11984382 21 + TSS region transcription start site region 137114
Tssr137115 16 11984389 to 11984422 33 + TSS region transcription start site region 137115
D16Mit100 16 12095172 to 12095314 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 100
Tssr137116 16 12261264 to 12261266 2 + TSS region transcription start site region 137116
Gm19571 16 12381130 to 12381502 372 - pseudogene predicted gene, 19571
C87114 16 12408283 to 12409177 894 - pseudogene expressed sequence C87114
Tssr137117 16 12450354 to 12450355 1 + TSS region transcription start site region 137117
Gm45919 16 12563416 to 12684245 120829 - lncRNA gene predicted gene, 45919
4930414F18Rik 16 12629084 to 12945935 316851 - lincRNA gene RIKEN cDNA 4930414F18 gene
Tssr140033 16 12690871 to 12690874 3 - TSS region transcription start site region 140033
Gm38619 16 12704348 to 12711595 7247 + lincRNA gene predicted gene, 38619
Tssr137118 16 12704399 to 12704416 17 + TSS region transcription start site region 137118