Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:11220693-11620724

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2610020C07Rik 16 11203383 to 11225796 22413 + antisense lncRNA gene RIKEN cDNA 2610020C07 gene
Gspt1 16 11219292 to 11254325 35033 - protein coding gene G1 to S phase transition 1
Tssr140009 16 11227561 to 11227567 6 - TSS region transcription start site region 140009
Cpgi7963 16 11253204 to 11254840 1636 CpG island CpG island 7963
Tssr140010 16 11253766 to 11253771 5 - TSS region transcription start site region 140010
Tssr140011 16 11253982 to 11254045 63 - TSS region transcription start site region 140011
Tssr140012 16 11254096 to 11254107 11 - TSS region transcription start site region 140012
Tssr140013 16 11254145 to 11254158 13 - TSS region transcription start site region 140013
Tssr140014 16 11254161 to 11254246 85 - TSS region transcription start site region 140014
Tssr140015 16 11254250 to 11254264 14 - TSS region transcription start site region 140015
Tssr140016 16 11254268 to 11254303 35 - TSS region transcription start site region 140016
Tssr140017 16 11254309 to 11254336 27 - TSS region transcription start site region 140017
Tssr140018 16 11254342 to 11254352 10 - TSS region transcription start site region 140018
Tssr140019 16 11254366 to 11254375 9 - TSS region transcription start site region 140019
Mir1945 16 11254368 to 11254445 77 - miRNA gene microRNA 1945
Tssr140020 16 11254432 to 11254448 16 - TSS region transcription start site region 140020
Tssr137081 16 11254492 to 11254519 27 + TSS region transcription start site region 137081
Tssr140021 16 11288292 to 11288318 26 - TSS region transcription start site region 140021
Tnfrsf17 16 11313812 to 11320074 6262 + protein coding gene tumor necrosis factor receptor superfamily, member 17
Cpgi7964 16 11322557 to 11323612 1055 CpG island CpG island 7964
Tssr137082 16 11322876 to 11322911 35 + TSS region transcription start site region 137082
Snx29 16 11322908 to 11755472 432564 + protein coding gene sorting nexin 29
Tssr137083 16 11322915 to 11322930 15 + TSS region transcription start site region 137083
Tssr140022 16 11343405 to 11343450 45 - TSS region transcription start site region 140022
Tssr137084 16 11361078 to 11361096 18 + TSS region transcription start site region 137084
Tssr140023 16 11365773 to 11365778 5 - TSS region transcription start site region 140023
A7300091P13Rik 16 11387259 to 11389777 2518 unclassified gene RIKEN cDNA A7300091P13 gene
Tssr137085 16 11387593 to 11387607 14 + TSS region transcription start site region 137085
Gm18868 16 11393047 to 11394840 1793 + pseudogene predicted gene, 18868
Tssr137086 16 11397099 to 11397104 5 + TSS region transcription start site region 137086
Tssr137087 16 11397193 to 11397217 24 + TSS region transcription start site region 137087
Tssr137088 16 11398269 to 11398296 27 + TSS region transcription start site region 137088
Tssr137089 16 11399597 to 11399611 14 + TSS region transcription start site region 137089
Tssr137090 16 11399620 to 11399639 19 + TSS region transcription start site region 137090
Tssr137091 16 11401172 to 11401193 21 + TSS region transcription start site region 137091
Tssr137092 16 11405676 to 11405713 37 + TSS region transcription start site region 137092
Tssr137093 16 11406618 to 11406675 57 + TSS region transcription start site region 137093
Tssr137094 16 11406777 to 11406789 12 + TSS region transcription start site region 137094
Tssr137095 16 11420489 to 11420576 87 + TSS region transcription start site region 137095
Tssr137096 16 11420586 to 11420598 12 + TSS region transcription start site region 137096
Tssr137097 16 11420693 to 11420724 31 + TSS region transcription start site region 137097
Tssr137098 16 11420726 to 11420744 18 + TSS region transcription start site region 137098
Tssr140024 16 11442592 to 11442600 8 - TSS region transcription start site region 140024
Tssr137099 16 11447285 to 11447296 11 + TSS region transcription start site region 137099
Tssr137100 16 11447305 to 11447314 9 + TSS region transcription start site region 137100
Tssr140025 16 11456298 to 11456300 2 - TSS region transcription start site region 140025
Tssr4796 16 11456610 to 11456626 16 + TSS region transcription start site region 4796
Tssr140026 16 11461630 to 11461636 6 - TSS region transcription start site region 140026
Tssr137101 16 11461830 to 11461842 12 + TSS region transcription start site region 137101
Tssr137102 16 11461845 to 11461862 17 + TSS region transcription start site region 137102
Tssr137103 16 11461905 to 11461912 7 + TSS region transcription start site region 137103
Gm15897 16 11494821 to 11496306 1485 - pseudogene predicted gene 15897
Tssr137104 16 11500705 to 11500712 7 + TSS region transcription start site region 137104
5830487K18Rik 16 11549741 to 11551159 1418 unclassified gene RIKEN cDNA 5830487K18 gene
Gm32100 16 11583706 to 11588531 4825 + lncRNA gene predicted gene, 32100
Tssr137105 16 11584508 to 11584513 5 + TSS region transcription start site region 137105
Tssr137106 16 11615880 to 11615902 22 + TSS region transcription start site region 137106
D16Mit81 16 11616382 to 11616494 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 81
Dice1 16 11616382 to 11616494 112 QTL determination of interleukin 4 commitment 1