Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:10889821-12101306

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49960 16 10861755 to 10938364 76609 - pseudogene predicted gene, 49960
Gm21859 16 10912012 to 10914797 2785 - lncRNA gene predicted gene, 21859
Tssr139970 16 10954775 to 10954782 7 - TSS region transcription start site region 139970
Litaf 16 10959273 to 10993121 33848 - protein coding gene LPS-induced TN factor
Tssr139971 16 10960458 to 10960461 3 - TSS region transcription start site region 139971
Tssr139972 16 10960521 to 10960544 23 - TSS region transcription start site region 139972
Tssr139973 16 10960580 to 10960591 11 - TSS region transcription start site region 139973
Tssr139974 16 10960707 to 10960714 7 - TSS region transcription start site region 139974
Tssr137064 16 10960855 to 10960866 11 + TSS region transcription start site region 137064
Tssr139975 16 10960911 to 10960914 3 - TSS region transcription start site region 139975
Tssr139976 16 10960988 to 10961002 14 - TSS region transcription start site region 139976
Tssr139977 16 10961045 to 10961052 7 - TSS region transcription start site region 139977
Tssr139978 16 10963289 to 10963305 16 - TSS region transcription start site region 139978
Tssr139979 16 10963355 to 10963409 54 - TSS region transcription start site region 139979
Tssr139980 16 10963611 to 10963655 44 - TSS region transcription start site region 139980
Gm26268 16 10965724 to 10965849 125 + miRNA gene predicted gene, 26268
Tssr139981 16 10966461 to 10966491 30 - TSS region transcription start site region 139981
Tssr139982 16 10966498 to 10966566 68 - TSS region transcription start site region 139982
Tssr139983 16 10966579 to 10966613 34 - TSS region transcription start site region 139983
Tssr139984 16 10971286 to 10971291 5 - TSS region transcription start site region 139984
Tssr137065 16 10976350 to 10976363 13 + TSS region transcription start site region 137065
Tssr4793 16 10976612 to 10976644 32 + TSS region transcription start site region 4793
Tssr139985 16 10983688 to 10983709 21 - TSS region transcription start site region 139985
Tssr139986 16 10992144 to 10992190 46 - TSS region transcription start site region 139986
Cpgi7957 16 10992269 to 10993435 1166 CpG island CpG island 7957
Tssr4794 16 10992335 to 10992354 19 + TSS region transcription start site region 4794
Tssr139987 16 10992644 to 10992665 21 - TSS region transcription start site region 139987
Tssr139988 16 10993070 to 10993094 24 - TSS region transcription start site region 139988
Tssr139989 16 10993100 to 10993111 11 - TSS region transcription start site region 139989
Tssr139990 16 10993135 to 10993138 3 - TSS region transcription start site region 139990
Gm24961 16 10994386 to 10994569 183 + snRNA gene predicted gene, 24961
Tssr139991 16 11006070 to 11006109 39 - TSS region transcription start site region 139991
Tssr137066 16 11008464 to 11008493 29 + TSS region transcription start site region 137066
Gm4262 16 11008898 to 11015184 6286 + lincRNA gene predicted gene 4262
Tssr137067 16 11008935 to 11008946 11 + TSS region transcription start site region 137067
Tssr137068 16 11011510 to 11011551 41 + TSS region transcription start site region 137068
Tssr139992 16 11021516 to 11021556 40 - TSS region transcription start site region 139992
Tssr137069 16 11021643 to 11021682 39 + TSS region transcription start site region 137069
Tssr4795 16 11022148 to 11022151 3 - TSS region transcription start site region 4795
Tssr137070 16 11022322 to 11022332 10 + TSS region transcription start site region 137070
Gm10832 16 11031956 to 11036420 4464 + lincRNA gene predicted gene 10832
Tssr137071 16 11032100 to 11032139 39 + TSS region transcription start site region 137071
Gm3919 16 11036674 to 11037331 657 - pseudogene predicted gene 3919
Gm18724 16 11046935 to 11047932 997 + pseudogene predicted gene, 18724
1700096C16Rik 16 11055919 to 11056084 165 unclassified gene RIKEN cDNA 1700096C16 gene
Gm9861 16 11059975 to 11066217 6242 - unclassified gene predicted gene 9861
Tssr137072 16 11060935 to 11060949 14 + TSS region transcription start site region 137072
Cpgi7958 16 11065838 to 11067163 1325 CpG island CpG island 7958
Tssr139993 16 11066077 to 11066109 32 - TSS region transcription start site region 139993
Tssr139994 16 11066141 to 11066165 24 - TSS region transcription start site region 139994
Tssr137073 16 11066292 to 11066381 89 + TSS region transcription start site region 137073
Snn 16 11066298 to 11074985 8687 + protein coding gene stannin
Txndc11 16 11074911 to 11134650 59739 - protein coding gene thioredoxin domain containing 11
Tssr137074 16 11077866 to 11077891 25 + TSS region transcription start site region 137074
Cpgi7959 16 11133993 to 11135111 1118 CpG island CpG island 7959
Tssr139995 16 11134497 to 11134512 15 - TSS region transcription start site region 139995
Tssr139996 16 11134546 to 11134590 44 - TSS region transcription start site region 139996
Tssr139997 16 11134601 to 11134623 22 - TSS region transcription start site region 139997
Tssr139998 16 11134624 to 11134659 35 - TSS region transcription start site region 139998
Zc3h7a 16 11136594 to 11176393 39799 - protein coding gene zinc finger CCCH type containing 7 A
D16Mit164 16 11139692 to 11139842 150 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 164
Dice1a 16 11139842 to 7983236 -3156606 QTL determination of interleukin 4 commitment 1a
Tssr137075 16 11143903 to 11143905 2 + TSS region transcription start site region 137075
Tssr137076 16 11143967 to 11143990 23 + TSS region transcription start site region 137076
Tssr137077 16 11144042 to 11144081 39 + TSS region transcription start site region 137077
Cpgi7960 16 11144061 to 11144431 370 CpG island CpG island 7960
Tssr137078 16 11144095 to 11144118 23 + TSS region transcription start site region 137078
Gm23935 16 11144125 to 11144181 56 + miRNA gene predicted gene, 23935
Tssr139999 16 11150133 to 11150137 4 - TSS region transcription start site region 139999
Tssr140000 16 11151731 to 11151765 34 - TSS region transcription start site region 140000
Tssr140001 16 11155096 to 11155115 19 - TSS region transcription start site region 140001
Gm24145 16 11167105 to 11167267 162 - snRNA gene predicted gene, 24145
Tssr140002 16 11175521 to 11175571 50 - TSS region transcription start site region 140002
Cpgi7961 16 11175522 to 11177145 1623 CpG island CpG island 7961
Tssr140003 16 11176025 to 11176038 13 - TSS region transcription start site region 140003
Tssr140004 16 11176056 to 11176070 14 - TSS region transcription start site region 140004
Tssr137079 16 11176195 to 11176220 25 + TSS region transcription start site region 137079
Tssr140005 16 11176251 to 11176260 9 - TSS region transcription start site region 140005
Tssr140006 16 11176270 to 11176365 95 - TSS region transcription start site region 140006
4930509G22Rik 16 11176342 to 11180565 4223 + lincRNA gene RIKEN cDNA 4930509G22 gene
Gm7638 16 11185100 to 11185896 796 - pseudogene predicted gene 7638
Gm6305 16 11190253 to 11191259 1006 - pseudogene predicted gene 6305
Rsl1d1 16 11193037 to 11203292 10255 - protein coding gene ribosomal L1 domain containing 1
Tssr140007 16 11200379 to 11200384 5 - TSS region transcription start site region 140007
Cpgi7962 16 11202805 to 11203852 1047 CpG island CpG island 7962
Tssr140008 16 11203259 to 11203312 53 - TSS region transcription start site region 140008
Tssr137080 16 11203375 to 11203448 73 + TSS region transcription start site region 137080
2610020C07Rik 16 11203383 to 11225796 22413 + antisense lncRNA gene RIKEN cDNA 2610020C07 gene
Gspt1 16 11219292 to 11254325 35033 - protein coding gene G1 to S phase transition 1
Tssr140009 16 11227561 to 11227567 6 - TSS region transcription start site region 140009
Cpgi7963 16 11253204 to 11254840 1636 CpG island CpG island 7963
Tssr140010 16 11253766 to 11253771 5 - TSS region transcription start site region 140010
Tssr140011 16 11253982 to 11254045 63 - TSS region transcription start site region 140011
Tssr140012 16 11254096 to 11254107 11 - TSS region transcription start site region 140012
Tssr140013 16 11254145 to 11254158 13 - TSS region transcription start site region 140013
Tssr140014 16 11254161 to 11254246 85 - TSS region transcription start site region 140014
Tssr140015 16 11254250 to 11254264 14 - TSS region transcription start site region 140015
Tssr140016 16 11254268 to 11254303 35 - TSS region transcription start site region 140016
Tssr140017 16 11254309 to 11254336 27 - TSS region transcription start site region 140017
Tssr140018 16 11254342 to 11254352 10 - TSS region transcription start site region 140018
Tssr140019 16 11254366 to 11254375 9 - TSS region transcription start site region 140019
Mir1945 16 11254368 to 11254445 77 - miRNA gene microRNA 1945
Tssr140020 16 11254432 to 11254448 16 - TSS region transcription start site region 140020
Tssr137081 16 11254492 to 11254519 27 + TSS region transcription start site region 137081
Tssr140021 16 11288292 to 11288318 26 - TSS region transcription start site region 140021
Tnfrsf17 16 11313812 to 11320074 6262 + protein coding gene tumor necrosis factor receptor superfamily, member 17
Cpgi7964 16 11322557 to 11323612 1055 CpG island CpG island 7964
Tssr137082 16 11322876 to 11322911 35 + TSS region transcription start site region 137082
Snx29 16 11322908 to 11755472 432564 + protein coding gene sorting nexin 29
Tssr137083 16 11322915 to 11322930 15 + TSS region transcription start site region 137083
Tssr140022 16 11343405 to 11343450 45 - TSS region transcription start site region 140022
Tssr137084 16 11361078 to 11361096 18 + TSS region transcription start site region 137084
Tssr140023 16 11365773 to 11365778 5 - TSS region transcription start site region 140023
A7300091P13Rik 16 11387259 to 11389777 2518 unclassified gene RIKEN cDNA A7300091P13 gene
Tssr137085 16 11387593 to 11387607 14 + TSS region transcription start site region 137085
Gm18868 16 11393047 to 11394840 1793 + pseudogene predicted gene, 18868
Tssr137086 16 11397099 to 11397104 5 + TSS region transcription start site region 137086
Tssr137087 16 11397193 to 11397217 24 + TSS region transcription start site region 137087
Tssr137088 16 11398269 to 11398296 27 + TSS region transcription start site region 137088
Tssr137089 16 11399597 to 11399611 14 + TSS region transcription start site region 137089
Tssr137090 16 11399620 to 11399639 19 + TSS region transcription start site region 137090
Tssr137091 16 11401172 to 11401193 21 + TSS region transcription start site region 137091
Tssr137092 16 11405676 to 11405713 37 + TSS region transcription start site region 137092
Tssr137093 16 11406618 to 11406675 57 + TSS region transcription start site region 137093
Tssr137094 16 11406777 to 11406789 12 + TSS region transcription start site region 137094
Tssr137095 16 11420489 to 11420576 87 + TSS region transcription start site region 137095
Tssr137096 16 11420586 to 11420598 12 + TSS region transcription start site region 137096
Tssr137097 16 11420693 to 11420724 31 + TSS region transcription start site region 137097
Tssr137098 16 11420726 to 11420744 18 + TSS region transcription start site region 137098
Tssr140024 16 11442592 to 11442600 8 - TSS region transcription start site region 140024
Tssr137099 16 11447285 to 11447296 11 + TSS region transcription start site region 137099
Tssr137100 16 11447305 to 11447314 9 + TSS region transcription start site region 137100
Tssr140025 16 11456298 to 11456300 2 - TSS region transcription start site region 140025
Tssr4796 16 11456610 to 11456626 16 + TSS region transcription start site region 4796
Tssr140026 16 11461630 to 11461636 6 - TSS region transcription start site region 140026
Tssr137101 16 11461830 to 11461842 12 + TSS region transcription start site region 137101
Tssr137102 16 11461845 to 11461862 17 + TSS region transcription start site region 137102
Tssr137103 16 11461905 to 11461912 7 + TSS region transcription start site region 137103
Gm15897 16 11494821 to 11496306 1485 - pseudogene predicted gene 15897
Tssr137104 16 11500705 to 11500712 7 + TSS region transcription start site region 137104
5830487K18Rik 16 11549741 to 11551159 1418 unclassified gene RIKEN cDNA 5830487K18 gene
Gm32100 16 11583706 to 11588531 4825 + lncRNA gene predicted gene, 32100
Tssr137105 16 11584508 to 11584513 5 + TSS region transcription start site region 137105
Tssr137106 16 11615880 to 11615902 22 + TSS region transcription start site region 137106
D16Mit81 16 11616382 to 11616494 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 81
Dice1 16 11616382 to 11616494 112 QTL determination of interleukin 4 commitment 1
Tssr137107 16 11632081 to 11632085 4 + TSS region transcription start site region 137107
Tssr140027 16 11633171 to 11633177 6 - TSS region transcription start site region 140027
Tssr137108 16 11644708 to 11644749 41 + TSS region transcription start site region 137108
Tssr137109 16 11656117 to 11656137 20 + TSS region transcription start site region 137109
Tssr137110 16 11656144 to 11656155 11 + TSS region transcription start site region 137110
Gm4279 16 11688169 to 11691857 3688 - antisense lncRNA gene predicted gene 4279
Tssr137111 16 11778448 to 11778465 17 + TSS region transcription start site region 137111
4833415N18Rik 16 11779702 to 11781501 1799 + lincRNA gene RIKEN cDNA 4833415N18 gene
Cpped1 16 11803721 to 11909445 105724 - protein coding gene calcineurin-like phosphoesterase domain containing 1
Tssr140028 16 11804985 to 11804998 13 - TSS region transcription start site region 140028
Gm9961 16 11901364 to 11930594 29230 + lincRNA gene predicted gene 9961
Cpgi7965 16 11909004 to 11909468 464 CpG island CpG island 7965
Tssr140029 16 11909337 to 11909353 16 - TSS region transcription start site region 140029
Tssr140030 16 11909356 to 11909379 23 - TSS region transcription start site region 140030
Tssr140031 16 11909383 to 11909390 7 - TSS region transcription start site region 140031
Tssr140032 16 11909405 to 11909429 24 - TSS region transcription start site region 140032
Gm32278 16 11978665 to 11983997 5332 - lncRNA gene predicted gene, 32278
Cpgi7966 16 11983142 to 11985374 2232 CpG island CpG island 7966
Tssr137112 16 11984107 to 11984153 46 + TSS region transcription start site region 137112
Shisa9 16 11984113 to 12270902 286789 + protein coding gene shisa family member 9
Tssr137113 16 11984156 to 11984170 14 + TSS region transcription start site region 137113
Tssr137114 16 11984361 to 11984382 21 + TSS region transcription start site region 137114
Tssr137115 16 11984389 to 11984422 33 + TSS region transcription start site region 137115
D16Mit100 16 12095172 to 12095314 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 100