Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99794181-100814190

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298 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lima1 15 99778470 to 99875456 96986 - protein coding gene LIM domain and actin binding 1
Gm25897 15 99803020 to 99803126 106 - snRNA gene predicted gene, 25897
Gm4468 15 99810289 to 99810582 293 - pseudogene predicted gene 4468
Gm17057 15 99819020 to 99834570 15550 + antisense lncRNA gene predicted gene 17057
Tssr136397 15 99819700 to 99819715 15 - TSS region transcription start site region 136397
Tssr136398 15 99819819 to 99819835 16 - TSS region transcription start site region 136398
Tssr136399 15 99819932 to 99819939 7 - TSS region transcription start site region 136399
Tssr136400 15 99820027 to 99820032 5 - TSS region transcription start site region 136400
Tssr136401 15 99820072 to 99820154 82 - TSS region transcription start site region 136401
Tssr136402 15 99821048 to 99821078 30 - TSS region transcription start site region 136402
Tssr133072 15 99821130 to 99821170 40 + TSS region transcription start site region 133072
Tssr136403 15 99853689 to 99853694 5 - TSS region transcription start site region 136403
Cpgi7725 15 99865446 to 99865700 254 CpG island CpG island 7725
Cpgi7726 15 99875065 to 99875735 670 CpG island CpG island 7726
Tssr136404 15 99875382 to 99875447 65 - TSS region transcription start site region 136404
Gm49494 15 99875540 to 99877595 2055 + unclassified non-coding RNA gene predicted gene, 49494
Tssr133073 15 99875564 to 99875621 57 + TSS region transcription start site region 133073
Gm18095 15 99880199 to 99880803 604 + pseudogene predicted gene, 18095
Gm18890 15 99883632 to 99884430 798 + pseudogene predicted gene, 18890
Uqcrh-ps1 15 99898289 to 99898556 267 - pseudogene ubiquinol-cytochrome c reductase hinge protein, pseudogene 1
Tssr133074 15 99902936 to 99902957 21 + TSS region transcription start site region 133074
Gm49495 15 99902963 to 99904276 1313 + unclassified gene predicted gene, 49495
1700121M21Rik 15 99914369 to 99920299 5930 + lncRNA gene RIKEN cDNA 1700121M21 gene
Gm20564 15 99915428 to 99915900 472 - pseudogene predicted gene, 20564
Tssr136405 15 99915934 to 99915938 4 - TSS region transcription start site region 136405
Fam186a 15 99918348 to 99931658 13310 - protein coding gene family with sequence similarity 186, member A
Cpgi7727 15 99931528 to 99931740 212 CpG island CpG island 7727
Tssr136406 15 99931645 to 99931673 28 - TSS region transcription start site region 136406
Tssr133075 15 99931679 to 99931695 16 + TSS region transcription start site region 133075
Gm21917 15 99931711 to 99953044 21333 + antisense lncRNA gene predicted gene, 21917
Tssr136407 15 99931784 to 99931803 19 - TSS region transcription start site region 136407
Gm23133 15 99937307 to 99937441 134 - snRNA gene predicted gene, 23133
Tssr136408 15 99967055 to 99967066 11 - TSS region transcription start site region 136408
Tssr136409 15 99967067 to 99967077 10 - TSS region transcription start site region 136409
Tssr136410 15 99967081 to 99967087 6 - TSS region transcription start site region 136410
2310068J16Rik 15 99972167 to 99973287 1120 - antisense lncRNA gene RIKEN cDNA 2310068J16 gene
Cpgi7728 15 99972502 to 99973851 1349 CpG island CpG island 7728
Tssr136411 15 99972714 to 99972738 24 - TSS region transcription start site region 136411
Tssr133076 15 99972810 to 99972821 11 + TSS region transcription start site region 133076
Tssr133077 15 99972834 to 99972896 62 + TSS region transcription start site region 133077
Tssr133078 15 99972906 to 99972925 19 + TSS region transcription start site region 133078
Tssr133079 15 100005145 to 100005160 15 + TSS region transcription start site region 133079
Larp4 15 100016358 to 99970065 -46293 + protein coding gene La ribonucleoprotein domain family, member 4
Cpgi7729 15 100038260 to 100039436 1176 CpG island CpG island 7729
Tssr133080 15 100038635 to 100038669 34 + TSS region transcription start site region 133080
Dip2b 15 100038664 to 100219473 180809 + protein coding gene disco interacting protein 2 homolog B
Tssr133081 15 100038674 to 100038721 47 + TSS region transcription start site region 133081
Tssr133082 15 100038747 to 100038808 61 + TSS region transcription start site region 133082
Tssr136412 15 100041397 to 100041412 15 - TSS region transcription start site region 136412
Tssr133083 15 100060245 to 100060258 13 + TSS region transcription start site region 133083
Tssr4715 15 100063608 to 100063614 6 + TSS region transcription start site region 4715
Tssr133084 15 100067501 to 100067513 12 + TSS region transcription start site region 133084
Tssr133085 15 100075104 to 100075122 18 + TSS region transcription start site region 133085
Tssr4716 15 100084211 to 100084248 37 + TSS region transcription start site region 4716
Gm49474 15 100089891 to 100091757 1866 - unclassified gene predicted gene, 49474
Cpgi7730 15 100091994 to 100092547 553 CpG island CpG island 7730
9430088F21Rik 15 100093451 to 100096226 2775 unclassified gene RIKEN cDNA 9430088F21 gene
4930478M13Rik 15 100105234 to 100108161 2927 - antisense lncRNA gene RIKEN cDNA 4930478M13 gene
Cpgi7731 15 100108508 to 100108690 182 CpG island CpG island 7731
Tssr133086 15 100154169 to 100154214 45 + TSS region transcription start site region 133086
Tssr133087 15 100154379 to 100154411 32 + TSS region transcription start site region 133087
Tssr133088 15 100156974 to 100156979 5 + TSS region transcription start site region 133088
Tssr133089 15 100181437 to 100181448 11 + TSS region transcription start site region 133089
Tssr133090 15 100182273 to 100182314 41 + TSS region transcription start site region 133090
Gm49475 15 100189900 to 100195311 5411 - antisense lncRNA gene predicted gene, 49475
Tssr133091 15 100198639 to 100198654 15 + TSS region transcription start site region 133091
Tssr133092 15 100199280 to 100199296 16 + TSS region transcription start site region 133092
Tssr133093 15 100202100 to 100202107 7 + TSS region transcription start site region 133093
Tssr133094 15 100217197 to 100217201 4 + TSS region transcription start site region 133094
Tssr133095 15 100227319 to 100227336 17 + TSS region transcription start site region 133095
Cpgi7732 15 100227457 to 100228619 1162 CpG island CpG island 7732
Tssr136413 15 100227721 to 100227761 40 - TSS region transcription start site region 136413
Tssr133096 15 100227813 to 100227824 11 + TSS region transcription start site region 133096
Tssr133097 15 100227835 to 100227856 21 + TSS region transcription start site region 133097
Tssr133098 15 100227858 to 100227869 11 + TSS region transcription start site region 133098
Atf1 15 100227859 to 100261248 33389 + protein coding gene activating transcription factor 1
Tssr133099 15 100227871 to 100227878 7 + TSS region transcription start site region 133099
Tssr133100 15 100227899 to 100227904 5 + TSS region transcription start site region 133100
Tssr133101 15 100227907 to 100227916 9 + TSS region transcription start site region 133101
Tssr133102 15 100227927 to 100227943 16 + TSS region transcription start site region 133102
Tssr133103 15 100228229 to 100228280 51 + TSS region transcription start site region 133103
Tssr133104 15 100228313 to 100228341 28 + TSS region transcription start site region 133104
Tssr133105 15 100246183 to 100246204 21 + TSS region transcription start site region 133105
Tssr133106 15 100246224 to 100246239 15 + TSS region transcription start site region 133106
Tssr133107 15 100251678 to 100251703 25 + TSS region transcription start site region 133107
Tssr133108 15 100251708 to 100251724 16 + TSS region transcription start site region 133108
Tssr133109 15 100269183 to 100269190 7 + TSS region transcription start site region 133109
Tssr4717 15 100270088 to 100270103 15 + TSS region transcription start site region 4717
Tssr133110 15 100271685 to 100271696 11 + TSS region transcription start site region 133110
Tssr133111 15 100275991 to 100275998 7 + TSS region transcription start site region 133111
Tssr133112 15 100279951 to 100279955 4 + TSS region transcription start site region 133112
Cpgi7733 15 100280497 to 100281118 621 CpG island CpG island 7733
Tmprss12 15 100280837 to 100293053 12216 + protein coding gene transmembrane (C-terminal) protease, serine 12
Tssr133113 15 100280850 to 100280871 21 + TSS region transcription start site region 133113
Tssr133114 15 100297123 to 100297156 33 + TSS region transcription start site region 133114
Gm33666 15 100297171 to 100297451 280 + pseudogene predicted gene, 33666
Mettl7a1 15 100304145 to 100328665 24520 + protein coding gene methyltransferase like 7A1
Tssr133115 15 100304155 to 100304175 20 + TSS region transcription start site region 133115
Tssr133116 15 100304181 to 100304190 9 + TSS region transcription start site region 133116
Tssr133117 15 100304198 to 100304210 12 + TSS region transcription start site region 133117
Tssr133118 15 100304211 to 100304222 11 + TSS region transcription start site region 133118
Tssr133119 15 100304227 to 100304243 16 + TSS region transcription start site region 133119
Tssr133120 15 100304782 to 100304848 66 + TSS region transcription start site region 133120
Cpgi7734 15 100304788 to 100305008 220 CpG island CpG island 7734
Tssr133121 15 100304942 to 100304991 49 + TSS region transcription start site region 133121
Tssr4718 15 100306873 to 100306905 32 + TSS region transcription start site region 4718
Tssr4719 15 100313913 to 100313926 13 + TSS region transcription start site region 4719
Mettl7a3 15 100334929 to 100340375 5446 + protein coding gene methyltransferase like 7A3
Tssr133122 15 100345763 to 100345783 20 + TSS region transcription start site region 133122
0610039G09Rik 15 100345772 to 100346367 595 unclassified gene RIKEN cDNA 0610039G09 gene
Mettl7a2 15 100353200 to 100361819 8619 + protein coding gene methyltransferase like 7A2
Methig1 15 100353200 to 100384435 31235 + protein coding gene methyltransferase hypoxia inducible domain containing 1
Tssr133123 15 100364563 to 100364573 10 + TSS region transcription start site region 133123
Higd1c 15 100364585 to 100383955 19370 + protein coding gene HIG1 domain family, member 1C
Slc11a2 15 100387898 to 100424214 36316 - protein coding gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
Tssr136414 15 100403258 to 100403270 12 - TSS region transcription start site region 136414
Tssr136415 15 100403334 to 100403344 10 - TSS region transcription start site region 136415
Tssr136416 15 100403382 to 100403400 18 - TSS region transcription start site region 136416
Tssr136417 15 100403408 to 100403428 20 - TSS region transcription start site region 136417
Tssr136418 15 100403437 to 100403456 19 - TSS region transcription start site region 136418
Tssr136419 15 100410159 to 100410167 8 - TSS region transcription start site region 136419
Tssr136420 15 100415744 to 100415759 15 - TSS region transcription start site region 136420
Tssr136421 15 100415790 to 100415801 11 - TSS region transcription start site region 136421
Tssr136422 15 100418105 to 100418111 6 - TSS region transcription start site region 136422
Tssr133124 15 100421582 to 100421590 8 + TSS region transcription start site region 133124
Tssr133125 15 100421671 to 100421683 12 + TSS region transcription start site region 133125
Cpgi7735 15 100422256 to 100423584 1328 CpG island CpG island 7735
Tssr136423 15 100422991 to 100423039 48 - TSS region transcription start site region 136423
Tssr136424 15 100423045 to 100423056 11 - TSS region transcription start site region 136424
Gm5475 15 100423193 to 100428150 4957 + protein coding gene predicted gene 5475
Tssr136425 15 100424169 to 100424173 4 - TSS region transcription start site region 136425
Tssr136426 15 100424208 to 100424219 11 - TSS region transcription start site region 136426
Tssr136427 15 100425050 to 100425075 25 - TSS region transcription start site region 136427
Tssr136428 15 100425098 to 100425105 7 - TSS region transcription start site region 136428
Tssr133126 15 100443296 to 100443311 15 + TSS region transcription start site region 133126
Cpgi7736 15 100443521 to 100443784 263 CpG island CpG island 7736
n-R5s43 15 100449684 to 100449793 109 + rRNA gene nuclear encoded rRNA 5S 43
Cpgi7737 15 100457350 to 100457655 305 CpG island CpG island 7737
5330439K02Rik 15 100459740 to 100468691 8951 - bidirectional promoter lncRNA gene RIKEN cDNA 5330439K02 gene
Cpgi7738 15 100461059 to 100461217 158 CpG island CpG island 7738
Tssr133127 15 100461197 to 100461208 11 + TSS region transcription start site region 133127
Cpgi7739 15 100468439 to 100469956 1517 CpG island CpG island 7739
Tssr133128 15 100468975 to 100468993 18 + TSS region transcription start site region 133128
Letmd1 15 100469023 to 100479164 10141 + protein coding gene LETM1 domain containing 1
Tssr133129 15 100469056 to 100469075 19 + TSS region transcription start site region 133129
Tssr133130 15 100469081 to 100469126 45 + TSS region transcription start site region 133130
Tssr133131 15 100469790 to 100469801 11 + TSS region transcription start site region 133131
Tssr133132 15 100478794 to 100478799 5 + TSS region transcription start site region 133132
Csrnp2 15 100479570 to 100495239 15669 - protein coding gene cysteine-serine-rich nuclear protein 2
Tssr136429 15 100480583 to 100480588 5 - TSS region transcription start site region 136429
Tssr136430 15 100486606 to 100486630 24 - TSS region transcription start site region 136430
Tssr136431 15 100491852 to 100491853 1 - TSS region transcription start site region 136431
Cpgi7740 15 100494470 to 100495583 1113 CpG island CpG island 7740
Tssr136432 15 100495055 to 100495057 2 - TSS region transcription start site region 136432
Tssr136433 15 100495251 to 100495267 16 - TSS region transcription start site region 136433
Tfcp2 15 100498012 to 100552008 53996 - protein coding gene transcription factor CP2
Cpgi7741 15 100551216 to 100552332 1116 CpG island CpG island 7741
Tssr136434 15 100551836 to 100551856 20 - TSS region transcription start site region 136434
Tssr136435 15 100551959 to 100552010 51 - TSS region transcription start site region 136435
Pou6f1 15 100575318 to 100599984 24666 - protein coding gene POU domain, class 6, transcription factor 1
Tssr136436 15 100580204 to 100580236 32 - TSS region transcription start site region 136436
Tssr136437 15 100591684 to 100591690 6 - TSS region transcription start site region 136437
Gm27209 15 100595416 to 100597293 1877 + antisense lncRNA gene predicted gene 27209
Tssr133133 15 100598967 to 100599015 48 + TSS region transcription start site region 133133
Cpgi7742 15 100599132 to 100600648 1516 CpG island CpG island 7742
Tssr133134 15 100599722 to 100599747 25 + TSS region transcription start site region 133134
Tssr133135 15 100599750 to 100599767 17 + TSS region transcription start site region 133135
Tssr133136 15 100599772 to 100599793 21 + TSS region transcription start site region 133136
Tssr136438 15 100599962 to 100599979 17 - TSS region transcription start site region 136438
Tssr136439 15 100599983 to 100600039 56 - TSS region transcription start site region 136439
Gm49492 15 100600204 to 100602766 2562 + bidirectional promoter lncRNA gene predicted gene, 49492
Tssr133137 15 100601977 to 100601981 4 + TSS region transcription start site region 133137
1110013H19Rik 15 100613173 to 100613843 670 - lincRNA gene RIKEN cDNA 1110013H19 gene
Cpgi7743 15 100613581 to 100613764 183 CpG island CpG island 7743
C330013E15Rik 15 100614140 to 100615110 970 - bidirectional promoter lncRNA gene RIKEN cDNA C330013E15 gene
Cpgi7744 15 100614391 to 100616573 2182 CpG island CpG island 7744
Tssr136440 15 100615071 to 100615124 53 - TSS region transcription start site region 136440
Tssr133138 15 100615620 to 100615677 57 + TSS region transcription start site region 133138
Dazap2 15 100615662 to 100620761 5099 + protein coding gene DAZ associated protein 2
Tssr136441 15 100615920 to 100615938 18 - TSS region transcription start site region 136441
Tssr133139 15 100616042 to 100616109 67 + TSS region transcription start site region 133139
Tssr133140 15 100616276 to 100616305 29 + TSS region transcription start site region 133140
Tssr133141 15 100616319 to 100616339 20 + TSS region transcription start site region 133141
Tssr133142 15 100616902 to 100616925 23 + TSS region transcription start site region 133142
Tssr133143 15 100619516 to 100619532 16 + TSS region transcription start site region 133143
Tssr133144 15 100619670 to 100619688 18 + TSS region transcription start site region 133144
Tssr133145 15 100619728 to 100619762 34 + TSS region transcription start site region 133145
Tssr133146 15 100619827 to 100619840 13 + TSS region transcription start site region 133146
Tssr133147 15 100619853 to 100619897 44 + TSS region transcription start site region 133147
Tssr133148 15 100619899 to 100619912 13 + TSS region transcription start site region 133148
Tssr133149 15 100619964 to 100620007 43 + TSS region transcription start site region 133149
Tssr136442 15 100620021 to 100620043 22 - TSS region transcription start site region 136442
Tssr133150 15 100620029 to 100620059 30 + TSS region transcription start site region 133150
Smagp 15 100621339 to 100636940 15601 - protein coding gene small cell adhesion glycoprotein
Cpgi7745 15 100636105 to 100637418 1313 CpG island CpG island 7745
Tssr136443 15 100636703 to 100636735 32 - TSS region transcription start site region 136443
Tssr136444 15 100636742 to 100636777 35 - TSS region transcription start site region 136444
Tssr136445 15 100636833 to 100636848 15 - TSS region transcription start site region 136445
Tssr136446 15 100636853 to 100636900 47 - TSS region transcription start site region 136446
Tssr136447 15 100636992 to 100637002 10 - TSS region transcription start site region 136447