Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99742055-100192066

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cers5 15 99735592 to 99772515 36923 - protein coding gene ceramide synthase 5
Gm17058 15 99765991 to 99782332 16341 + antisense lncRNA gene predicted gene 17058
Cpgi7723 15 99771606 to 99772847 1241 CpG island CpG island 7723
Tssr136390 15 99772395 to 99772458 63 - TSS region transcription start site region 136390
Tssr136391 15 99772531 to 99772542 11 - TSS region transcription start site region 136391
Tssr136392 15 99772596 to 99772608 12 - TSS region transcription start site region 136392
Tssr136393 15 99772871 to 99772902 31 - TSS region transcription start site region 136393
Lima1 15 99778470 to 99875456 96986 - protein coding gene LIM domain and actin binding 1
Tssr136394 15 99780372 to 99780378 6 - TSS region transcription start site region 136394
Cpgi7724 15 99780562 to 99781105 543 CpG island CpG island 7724
Tssr136395 15 99780566 to 99780585 19 - TSS region transcription start site region 136395
Tssr136396 15 99788871 to 99788873 2 - TSS region transcription start site region 136396
Gm25897 15 99803020 to 99803126 106 - snRNA gene predicted gene, 25897
Gm4468 15 99810289 to 99810582 293 - pseudogene predicted gene 4468
Gm17057 15 99819020 to 99834570 15550 + antisense lncRNA gene predicted gene 17057
Tssr136397 15 99819700 to 99819715 15 - TSS region transcription start site region 136397
Tssr136398 15 99819819 to 99819835 16 - TSS region transcription start site region 136398
Tssr136399 15 99819932 to 99819939 7 - TSS region transcription start site region 136399
Tssr136400 15 99820027 to 99820032 5 - TSS region transcription start site region 136400
Tssr136401 15 99820072 to 99820154 82 - TSS region transcription start site region 136401
Tssr136402 15 99821048 to 99821078 30 - TSS region transcription start site region 136402
Tssr133072 15 99821130 to 99821170 40 + TSS region transcription start site region 133072
Tssr136403 15 99853689 to 99853694 5 - TSS region transcription start site region 136403
Cpgi7725 15 99865446 to 99865700 254 CpG island CpG island 7725
Cpgi7726 15 99875065 to 99875735 670 CpG island CpG island 7726
Tssr136404 15 99875382 to 99875447 65 - TSS region transcription start site region 136404
Gm49494 15 99875540 to 99877595 2055 + unclassified non-coding RNA gene predicted gene, 49494
Tssr133073 15 99875564 to 99875621 57 + TSS region transcription start site region 133073
Gm18095 15 99880199 to 99880803 604 + pseudogene predicted gene, 18095
Gm18890 15 99883632 to 99884430 798 + pseudogene predicted gene, 18890
Uqcrh-ps1 15 99898289 to 99898556 267 - pseudogene ubiquinol-cytochrome c reductase hinge protein, pseudogene 1
Tssr133074 15 99902936 to 99902957 21 + TSS region transcription start site region 133074
Gm49495 15 99902963 to 99904276 1313 + unclassified gene predicted gene, 49495
1700121M21Rik 15 99914369 to 99920299 5930 + lncRNA gene RIKEN cDNA 1700121M21 gene
Gm20564 15 99915428 to 99915900 472 - pseudogene predicted gene, 20564
Tssr136405 15 99915934 to 99915938 4 - TSS region transcription start site region 136405
Fam186a 15 99918348 to 99931658 13310 - protein coding gene family with sequence similarity 186, member A
Cpgi7727 15 99931528 to 99931740 212 CpG island CpG island 7727
Tssr136406 15 99931645 to 99931673 28 - TSS region transcription start site region 136406
Tssr133075 15 99931679 to 99931695 16 + TSS region transcription start site region 133075
Gm21917 15 99931711 to 99953044 21333 + antisense lncRNA gene predicted gene, 21917
Tssr136407 15 99931784 to 99931803 19 - TSS region transcription start site region 136407
Gm23133 15 99937307 to 99937441 134 - snRNA gene predicted gene, 23133
Tssr136408 15 99967055 to 99967066 11 - TSS region transcription start site region 136408
Tssr136409 15 99967067 to 99967077 10 - TSS region transcription start site region 136409
Tssr136410 15 99967081 to 99967087 6 - TSS region transcription start site region 136410
2310068J16Rik 15 99972167 to 99973287 1120 - antisense lncRNA gene RIKEN cDNA 2310068J16 gene
Cpgi7728 15 99972502 to 99973851 1349 CpG island CpG island 7728
Tssr136411 15 99972714 to 99972738 24 - TSS region transcription start site region 136411
Tssr133076 15 99972810 to 99972821 11 + TSS region transcription start site region 133076
Tssr133077 15 99972834 to 99972896 62 + TSS region transcription start site region 133077
Tssr133078 15 99972906 to 99972925 19 + TSS region transcription start site region 133078
Tssr133079 15 100005145 to 100005160 15 + TSS region transcription start site region 133079
Larp4 15 100016358 to 99970065 -46293 + protein coding gene La ribonucleoprotein domain family, member 4
Cpgi7729 15 100038260 to 100039436 1176 CpG island CpG island 7729
Tssr133080 15 100038635 to 100038669 34 + TSS region transcription start site region 133080
Dip2b 15 100038664 to 100219473 180809 + protein coding gene disco interacting protein 2 homolog B
Tssr133081 15 100038674 to 100038721 47 + TSS region transcription start site region 133081
Tssr133082 15 100038747 to 100038808 61 + TSS region transcription start site region 133082
Tssr136412 15 100041397 to 100041412 15 - TSS region transcription start site region 136412
Tssr133083 15 100060245 to 100060258 13 + TSS region transcription start site region 133083
Tssr4715 15 100063608 to 100063614 6 + TSS region transcription start site region 4715
Tssr133084 15 100067501 to 100067513 12 + TSS region transcription start site region 133084
Tssr133085 15 100075104 to 100075122 18 + TSS region transcription start site region 133085
Tssr4716 15 100084211 to 100084248 37 + TSS region transcription start site region 4716
Gm49474 15 100089891 to 100091757 1866 - unclassified gene predicted gene, 49474
Cpgi7730 15 100091994 to 100092547 553 CpG island CpG island 7730
9430088F21Rik 15 100093451 to 100096226 2775 unclassified gene RIKEN cDNA 9430088F21 gene
4930478M13Rik 15 100105234 to 100108161 2927 - antisense lncRNA gene RIKEN cDNA 4930478M13 gene
Cpgi7731 15 100108508 to 100108690 182 CpG island CpG island 7731
Tssr133086 15 100154169 to 100154214 45 + TSS region transcription start site region 133086
Tssr133087 15 100154379 to 100154411 32 + TSS region transcription start site region 133087
Tssr133088 15 100156974 to 100156979 5 + TSS region transcription start site region 133088
Tssr133089 15 100181437 to 100181448 11 + TSS region transcription start site region 133089
Tssr133090 15 100182273 to 100182314 41 + TSS region transcription start site region 133090
Gm49475 15 100189900 to 100195311 5411 - antisense lncRNA gene predicted gene, 49475