Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99685592-99822515

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Asic1 15 99670368 to 99701130 30762 + protein coding gene acid-sensing (proton-gated) ion channel 1
Tssr4714 15 99692189 to 99692199 10 + TSS region transcription start site region 4714
Tssr133045 15 99692218 to 99692229 11 + TSS region transcription start site region 133045
Tssr133046 15 99699897 to 99699902 5 + TSS region transcription start site region 133046
Cpgi7721 15 99701824 to 99702831 1007 CpG island CpG island 7721
Tssr133047 15 99702097 to 99702119 22 + TSS region transcription start site region 133047
Tssr133048 15 99702137 to 99702205 68 + TSS region transcription start site region 133048
Gm17349 15 99702176 to 99705490 3314 - protein coding gene predicted gene, 17349
Tssr133049 15 99702278 to 99702312 34 + TSS region transcription start site region 133049
Smarcd1 15 99702287 to 99713995 11708 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Tssr136386 15 99702483 to 99702539 56 - TSS region transcription start site region 136386
Gm34939 15 99702571 to 99703739 1168 - antisense lncRNA gene predicted gene, 34939
Tssr133050 15 99702630 to 99702656 26 + TSS region transcription start site region 133050
Tssr136387 15 99703790 to 99703809 19 - TSS region transcription start site region 136387
Tssr133051 15 99704105 to 99704124 19 + TSS region transcription start site region 133051
Tssr133052 15 99704136 to 99704148 12 + TSS region transcription start site region 133052
Tssr133053 15 99704171 to 99704187 16 + TSS region transcription start site region 133053
Tssr133054 15 99704308 to 99704322 14 + TSS region transcription start site region 133054
Gm17241 15 99706562 to 99706813 251 - pseudogene predicted gene, 17241
Tssr136388 15 99706846 to 99706847 1 - TSS region transcription start site region 136388
Tssr133055 15 99710468 to 99710480 12 + TSS region transcription start site region 133055
Tssr133056 15 99710753 to 99710775 22 + TSS region transcription start site region 133056
Tssr133057 15 99712667 to 99712690 23 + TSS region transcription start site region 133057
Tssr133058 15 99712804 to 99712821 17 + TSS region transcription start site region 133058
Gm16537 15 99715534 to 99722156 6622 - antisense lncRNA gene predicted gene 16537
Tssr133059 15 99717578 to 99717594 16 + TSS region transcription start site region 133059
Gdcr1 15 99717593 to 99725008 7415 QTL glycerolphosphate dehydrogenase regulator 1
Gpd1 15 99717593 to 99725008 7415 + protein coding gene glycerol-3-phosphate dehydrogenase 1 (soluble)
Tssr133060 15 99718962 to 99718965 3 + TSS region transcription start site region 133060
Tssr133061 15 99719123 to 99719138 15 + TSS region transcription start site region 133061
Tssr133062 15 99719140 to 99719164 24 + TSS region transcription start site region 133062
D15Mit14 15 99721627 to 99721813 186 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 14
Tssr133063 15 99723425 to 99723442 17 + TSS region transcription start site region 133063
Tssr133064 15 99723703 to 99723754 51 + TSS region transcription start site region 133064
Tssr136389 15 99723780 to 99723811 31 - TSS region transcription start site region 136389
Tssr133065 15 99723833 to 99723857 24 + TSS region transcription start site region 133065
Tssr133066 15 99723980 to 99723994 14 + TSS region transcription start site region 133066
Cpgi7722 15 99725254 to 99726249 995 CpG island CpG island 7722
Tssr133067 15 99725616 to 99725685 69 + TSS region transcription start site region 133067
Cox14 15 99725618 to 99728136 2518 + protein coding gene cytochrome c oxidase assembly protein 14
Tssr133068 15 99725698 to 99725712 14 + TSS region transcription start site region 133068
Tssr133069 15 99725720 to 99725737 17 + TSS region transcription start site region 133069
Tssr133070 15 99725747 to 99725767 20 + TSS region transcription start site region 133070
Tssr133071 15 99725769 to 99725815 46 + TSS region transcription start site region 133071
Cers5 15 99735592 to 99772515 36923 - protein coding gene ceramide synthase 5
Gm17058 15 99765991 to 99782332 16341 + antisense lncRNA gene predicted gene 17058
Cpgi7723 15 99771606 to 99772847 1241 CpG island CpG island 7723
Tssr136390 15 99772395 to 99772458 63 - TSS region transcription start site region 136390
Tssr136391 15 99772531 to 99772542 11 - TSS region transcription start site region 136391
Tssr136392 15 99772596 to 99772608 12 - TSS region transcription start site region 136392
Tssr136393 15 99772871 to 99772902 31 - TSS region transcription start site region 136393
Lima1 15 99778470 to 99875456 96986 - protein coding gene LIM domain and actin binding 1
Tssr136394 15 99780372 to 99780378 6 - TSS region transcription start site region 136394
Cpgi7724 15 99780562 to 99781105 543 CpG island CpG island 7724
Tssr136395 15 99780566 to 99780585 19 - TSS region transcription start site region 136395
Tssr136396 15 99788871 to 99788873 2 - TSS region transcription start site region 136396
Gm25897 15 99803020 to 99803126 106 - snRNA gene predicted gene, 25897
Gm4468 15 99810289 to 99810582 293 - pseudogene predicted gene 4468
Gm17057 15 99819020 to 99834570 15550 + antisense lncRNA gene predicted gene 17057
Tssr136397 15 99819700 to 99819715 15 - TSS region transcription start site region 136397
Tssr136398 15 99819819 to 99819835 16 - TSS region transcription start site region 136398
Tssr136399 15 99819932 to 99819939 7 - TSS region transcription start site region 136399
Tssr136400 15 99820027 to 99820032 5 - TSS region transcription start site region 136400
Tssr136401 15 99820072 to 99820154 82 - TSS region transcription start site region 136401
Tssr136402 15 99821048 to 99821078 30 - TSS region transcription start site region 136402
Tssr133072 15 99821130 to 99821170 40 + TSS region transcription start site region 133072