Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99637395-99907458

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Racgap1 15 99620496 to 99651656 31160 - protein coding gene Rac GTPase-activating protein 1
Tssr136383 15 99637787 to 99637796 9 - TSS region transcription start site region 136383
Tssr136384 15 99637805 to 99637816 11 - TSS region transcription start site region 136384
Cpgi7716 15 99651177 to 99651876 699 CpG island CpG island 7716
Tssr136385 15 99651580 to 99651630 50 - TSS region transcription start site region 136385
Cpgi7717 15 99653748 to 99654045 297 CpG island CpG island 7717
Gm34880 15 99664364 to 99669558 5194 - lncRNA gene predicted gene, 34880
Cpgi7718 15 99664426 to 99665523 1097 CpG island CpG island 7718
Cpgi7719 15 99670061 to 99671465 1404 CpG island CpG island 7719
Tssr133041 15 99670217 to 99670231 14 + TSS region transcription start site region 133041
Tssr133042 15 99670327 to 99670396 69 + TSS region transcription start site region 133042
Asic1 15 99670368 to 99701130 30762 + protein coding gene acid-sensing (proton-gated) ion channel 1
Tssr133043 15 99670403 to 99670419 16 + TSS region transcription start site region 133043
Tssr133044 15 99670574 to 99670634 60 + TSS region transcription start site region 133044
Tssr4713 15 99671115 to 99671123 8 + TSS region transcription start site region 4713
Cpgi7720 15 99671808 to 99672112 304 CpG island CpG island 7720
D15Mit77 15 99674451 to 99674617 166 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 77
Tssr4714 15 99692189 to 99692199 10 + TSS region transcription start site region 4714
Tssr133045 15 99692218 to 99692229 11 + TSS region transcription start site region 133045
Tssr133046 15 99699897 to 99699902 5 + TSS region transcription start site region 133046
Cpgi7721 15 99701824 to 99702831 1007 CpG island CpG island 7721
Tssr133047 15 99702097 to 99702119 22 + TSS region transcription start site region 133047
Tssr133048 15 99702137 to 99702205 68 + TSS region transcription start site region 133048
Gm17349 15 99702176 to 99705490 3314 - protein coding gene predicted gene, 17349
Tssr133049 15 99702278 to 99702312 34 + TSS region transcription start site region 133049
Smarcd1 15 99702287 to 99713995 11708 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Tssr136386 15 99702483 to 99702539 56 - TSS region transcription start site region 136386
Gm34939 15 99702571 to 99703739 1168 - antisense lncRNA gene predicted gene, 34939
Tssr133050 15 99702630 to 99702656 26 + TSS region transcription start site region 133050
Tssr136387 15 99703790 to 99703809 19 - TSS region transcription start site region 136387
Tssr133051 15 99704105 to 99704124 19 + TSS region transcription start site region 133051
Tssr133052 15 99704136 to 99704148 12 + TSS region transcription start site region 133052
Tssr133053 15 99704171 to 99704187 16 + TSS region transcription start site region 133053
Tssr133054 15 99704308 to 99704322 14 + TSS region transcription start site region 133054
Gm17241 15 99706562 to 99706813 251 - pseudogene predicted gene, 17241
Tssr136388 15 99706846 to 99706847 1 - TSS region transcription start site region 136388
Tssr133055 15 99710468 to 99710480 12 + TSS region transcription start site region 133055
Tssr133056 15 99710753 to 99710775 22 + TSS region transcription start site region 133056
Tssr133057 15 99712667 to 99712690 23 + TSS region transcription start site region 133057
Tssr133058 15 99712804 to 99712821 17 + TSS region transcription start site region 133058
Gm16537 15 99715534 to 99722156 6622 - antisense lncRNA gene predicted gene 16537
Tssr133059 15 99717578 to 99717594 16 + TSS region transcription start site region 133059
Gpd1 15 99717593 to 99725008 7415 + protein coding gene glycerol-3-phosphate dehydrogenase 1 (soluble)
Gdcr1 15 99717593 to 99725008 7415 QTL glycerolphosphate dehydrogenase regulator 1
Tssr133060 15 99718962 to 99718965 3 + TSS region transcription start site region 133060
Tssr133061 15 99719123 to 99719138 15 + TSS region transcription start site region 133061
Tssr133062 15 99719140 to 99719164 24 + TSS region transcription start site region 133062
D15Mit14 15 99721627 to 99721813 186 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 14
Tssr133063 15 99723425 to 99723442 17 + TSS region transcription start site region 133063
Tssr133064 15 99723703 to 99723754 51 + TSS region transcription start site region 133064
Tssr136389 15 99723780 to 99723811 31 - TSS region transcription start site region 136389
Tssr133065 15 99723833 to 99723857 24 + TSS region transcription start site region 133065
Tssr133066 15 99723980 to 99723994 14 + TSS region transcription start site region 133066
Cpgi7722 15 99725254 to 99726249 995 CpG island CpG island 7722
Tssr133067 15 99725616 to 99725685 69 + TSS region transcription start site region 133067
Cox14 15 99725618 to 99728136 2518 + protein coding gene cytochrome c oxidase assembly protein 14
Tssr133068 15 99725698 to 99725712 14 + TSS region transcription start site region 133068
Tssr133069 15 99725720 to 99725737 17 + TSS region transcription start site region 133069
Tssr133070 15 99725747 to 99725767 20 + TSS region transcription start site region 133070
Tssr133071 15 99725769 to 99725815 46 + TSS region transcription start site region 133071
Cers5 15 99735592 to 99772515 36923 - protein coding gene ceramide synthase 5
Gm17058 15 99765991 to 99782332 16341 + antisense lncRNA gene predicted gene 17058
Cpgi7723 15 99771606 to 99772847 1241 CpG island CpG island 7723
Tssr136390 15 99772395 to 99772458 63 - TSS region transcription start site region 136390
Tssr136391 15 99772531 to 99772542 11 - TSS region transcription start site region 136391
Tssr136392 15 99772596 to 99772608 12 - TSS region transcription start site region 136392
Tssr136393 15 99772871 to 99772902 31 - TSS region transcription start site region 136393
Lima1 15 99778470 to 99875456 96986 - protein coding gene LIM domain and actin binding 1
Tssr136394 15 99780372 to 99780378 6 - TSS region transcription start site region 136394
Cpgi7724 15 99780562 to 99781105 543 CpG island CpG island 7724
Tssr136395 15 99780566 to 99780585 19 - TSS region transcription start site region 136395
Tssr136396 15 99788871 to 99788873 2 - TSS region transcription start site region 136396
Gm25897 15 99803020 to 99803126 106 - snRNA gene predicted gene, 25897
Gm4468 15 99810289 to 99810582 293 - pseudogene predicted gene 4468
Gm17057 15 99819020 to 99834570 15550 + antisense lncRNA gene predicted gene 17057
Tssr136397 15 99819700 to 99819715 15 - TSS region transcription start site region 136397
Tssr136398 15 99819819 to 99819835 16 - TSS region transcription start site region 136398
Tssr136399 15 99819932 to 99819939 7 - TSS region transcription start site region 136399
Tssr136400 15 99820027 to 99820032 5 - TSS region transcription start site region 136400
Tssr136401 15 99820072 to 99820154 82 - TSS region transcription start site region 136401
Tssr136402 15 99821048 to 99821078 30 - TSS region transcription start site region 136402
Tssr133072 15 99821130 to 99821170 40 + TSS region transcription start site region 133072
Tssr136403 15 99853689 to 99853694 5 - TSS region transcription start site region 136403
Cpgi7725 15 99865446 to 99865700 254 CpG island CpG island 7725
Cpgi7726 15 99875065 to 99875735 670 CpG island CpG island 7726
Tssr136404 15 99875382 to 99875447 65 - TSS region transcription start site region 136404
Gm49494 15 99875540 to 99877595 2055 + unclassified non-coding RNA gene predicted gene, 49494
Tssr133073 15 99875564 to 99875621 57 + TSS region transcription start site region 133073
Gm18095 15 99880199 to 99880803 604 + pseudogene predicted gene, 18095
Gm18890 15 99883632 to 99884430 798 + pseudogene predicted gene, 18890
Uqcrh-ps1 15 99898289 to 99898556 267 - pseudogene ubiquinol-cytochrome c reductase hinge protein, pseudogene 1
Tssr133074 15 99902936 to 99902957 21 + TSS region transcription start site region 133074
Gm49495 15 99902963 to 99904276 1313 + unclassified gene predicted gene, 49495