Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99531580-99771630

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr136375 15 99534864 to 99534882 18 - TSS region transcription start site region 136375
Tssr136376 15 99534893 to 99534913 20 - TSS region transcription start site region 136376
Tssr136377 15 99535913 to 99535917 4 - TSS region transcription start site region 136377
Gm5808 15 99555542 to 99556192 650 - pseudogene predicted gene 5808
Gm34765 15 99576722 to 99601527 24805 - lncRNA gene predicted gene, 34765
Cpgi7712 15 99578995 to 99579347 352 CpG island CpG island 7712
Tssr133032 15 99579054 to 99579059 5 + TSS region transcription start site region 133032
Aqp2 15 99579056 to 99584545 5489 + protein coding gene aquaporin 2
Tssr133033 15 99582861 to 99582865 4 + TSS region transcription start site region 133033
Cpgi7713 15 99583638 to 99584490 852 CpG island CpG island 7713
Cpgi7714 15 99590254 to 99591789 1535 CpG island CpG island 7714
Tssr133034 15 99590650 to 99590667 17 + TSS region transcription start site region 133034
Tssr136378 15 99590854 to 99590899 45 - TSS region transcription start site region 136378
Aqp5 15 99591028 to 99594829 3801 + protein coding gene aquaporin 5
Tssr133035 15 99591136 to 99591150 14 + TSS region transcription start site region 133035
Tssr133036 15 99592460 to 99592477 17 + TSS region transcription start site region 133036
Tssr133037 15 99601193 to 99601206 13 + TSS region transcription start site region 133037
Tssr133038 15 99601207 to 99601221 14 + TSS region transcription start site region 133038
Tssr133039 15 99601229 to 99601268 39 + TSS region transcription start site region 133039
Tssr133040 15 99601372 to 99601382 10 + TSS region transcription start site region 133040
Aqp6 15 99601400 to 99605477 4077 + protein coding gene aquaporin 6
Cpgi7715 15 99601504 to 99601744 240 CpG island CpG island 7715
Tssr136379 15 99601583 to 99601589 6 - TSS region transcription start site region 136379
Racgap1 15 99620496 to 99651656 31160 - protein coding gene Rac GTPase-activating protein 1
Tssr136380 15 99628671 to 99628691 20 - TSS region transcription start site region 136380
Tssr136381 15 99632802 to 99632814 12 - TSS region transcription start site region 136381
Tssr136382 15 99633961 to 99633965 4 - TSS region transcription start site region 136382
Tssr136383 15 99637787 to 99637796 9 - TSS region transcription start site region 136383
Tssr136384 15 99637805 to 99637816 11 - TSS region transcription start site region 136384
Cpgi7716 15 99651177 to 99651876 699 CpG island CpG island 7716
Tssr136385 15 99651580 to 99651630 50 - TSS region transcription start site region 136385
Cpgi7717 15 99653748 to 99654045 297 CpG island CpG island 7717
Gm34880 15 99664364 to 99669558 5194 - lncRNA gene predicted gene, 34880
Cpgi7718 15 99664426 to 99665523 1097 CpG island CpG island 7718
Cpgi7719 15 99670061 to 99671465 1404 CpG island CpG island 7719
Tssr133041 15 99670217 to 99670231 14 + TSS region transcription start site region 133041
Tssr133042 15 99670327 to 99670396 69 + TSS region transcription start site region 133042
Asic1 15 99670368 to 99701130 30762 + protein coding gene acid-sensing (proton-gated) ion channel 1
Tssr133043 15 99670403 to 99670419 16 + TSS region transcription start site region 133043
Tssr133044 15 99670574 to 99670634 60 + TSS region transcription start site region 133044
Tssr4713 15 99671115 to 99671123 8 + TSS region transcription start site region 4713
Cpgi7720 15 99671808 to 99672112 304 CpG island CpG island 7720
D15Mit77 15 99674451 to 99674617 166 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 77
Tssr4714 15 99692189 to 99692199 10 + TSS region transcription start site region 4714
Tssr133045 15 99692218 to 99692229 11 + TSS region transcription start site region 133045
Tssr133046 15 99699897 to 99699902 5 + TSS region transcription start site region 133046
Cpgi7721 15 99701824 to 99702831 1007 CpG island CpG island 7721
Tssr133047 15 99702097 to 99702119 22 + TSS region transcription start site region 133047
Tssr133048 15 99702137 to 99702205 68 + TSS region transcription start site region 133048
Gm17349 15 99702176 to 99705490 3314 - protein coding gene predicted gene, 17349
Tssr133049 15 99702278 to 99702312 34 + TSS region transcription start site region 133049
Smarcd1 15 99702287 to 99713995 11708 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Tssr136386 15 99702483 to 99702539 56 - TSS region transcription start site region 136386
Gm34939 15 99702571 to 99703739 1168 - antisense lncRNA gene predicted gene, 34939
Tssr133050 15 99702630 to 99702656 26 + TSS region transcription start site region 133050
Tssr136387 15 99703790 to 99703809 19 - TSS region transcription start site region 136387
Tssr133051 15 99704105 to 99704124 19 + TSS region transcription start site region 133051
Tssr133052 15 99704136 to 99704148 12 + TSS region transcription start site region 133052
Tssr133053 15 99704171 to 99704187 16 + TSS region transcription start site region 133053
Tssr133054 15 99704308 to 99704322 14 + TSS region transcription start site region 133054
Gm17241 15 99706562 to 99706813 251 - pseudogene predicted gene, 17241
Tssr136388 15 99706846 to 99706847 1 - TSS region transcription start site region 136388
Tssr133055 15 99710468 to 99710480 12 + TSS region transcription start site region 133055
Tssr133056 15 99710753 to 99710775 22 + TSS region transcription start site region 133056
Tssr133057 15 99712667 to 99712690 23 + TSS region transcription start site region 133057
Tssr133058 15 99712804 to 99712821 17 + TSS region transcription start site region 133058
Gm16537 15 99715534 to 99722156 6622 - antisense lncRNA gene predicted gene 16537
Tssr133059 15 99717578 to 99717594 16 + TSS region transcription start site region 133059
Gpd1 15 99717593 to 99725008 7415 + protein coding gene glycerol-3-phosphate dehydrogenase 1 (soluble)
Gdcr1 15 99717593 to 99725008 7415 QTL glycerolphosphate dehydrogenase regulator 1
Tssr133060 15 99718962 to 99718965 3 + TSS region transcription start site region 133060
Tssr133061 15 99719123 to 99719138 15 + TSS region transcription start site region 133061
Tssr133062 15 99719140 to 99719164 24 + TSS region transcription start site region 133062
D15Mit14 15 99721627 to 99721813 186 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 14
Tssr133063 15 99723425 to 99723442 17 + TSS region transcription start site region 133063
Tssr133064 15 99723703 to 99723754 51 + TSS region transcription start site region 133064
Tssr136389 15 99723780 to 99723811 31 - TSS region transcription start site region 136389
Tssr133065 15 99723833 to 99723857 24 + TSS region transcription start site region 133065
Tssr133066 15 99723980 to 99723994 14 + TSS region transcription start site region 133066
Cpgi7722 15 99725254 to 99726249 995 CpG island CpG island 7722
Tssr133067 15 99725616 to 99725685 69 + TSS region transcription start site region 133067
Cox14 15 99725618 to 99728136 2518 + protein coding gene cytochrome c oxidase assembly protein 14
Tssr133068 15 99725698 to 99725712 14 + TSS region transcription start site region 133068
Tssr133069 15 99725720 to 99725737 17 + TSS region transcription start site region 133069
Tssr133070 15 99725747 to 99725767 20 + TSS region transcription start site region 133070
Tssr133071 15 99725769 to 99725815 46 + TSS region transcription start site region 133071
Cers5 15 99735592 to 99772515 36923 - protein coding gene ceramide synthase 5
Gm17058 15 99765991 to 99782332 16341 + antisense lncRNA gene predicted gene 17058
Cpgi7723 15 99771606 to 99772847 1241 CpG island CpG island 7723