Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99470854-99710899

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcdin3d 15 99470084 to 99474730 4646 - protein coding gene BCDIN3 domain containing
Cpgi7710 15 99474187 to 99474870 683 CpG island CpG island 7710
Tssr136367 15 99474696 to 99474735 39 - TSS region transcription start site region 136367
Gm49485 15 99491824 to 99492224 400 - pseudogene predicted gene, 49485
Faim2 15 99497012 to 99528165 31153 - protein coding gene Fas apoptotic inhibitory molecule 2
Tssr136368 15 99497888 to 99497917 29 - TSS region transcription start site region 136368
Tssr136369 15 99499498 to 99499511 13 - TSS region transcription start site region 136369
Tssr136370 15 99500125 to 99500148 23 - TSS region transcription start site region 136370
Tssr136371 15 99521233 to 99521257 24 - TSS region transcription start site region 136371
Cpgi7711 15 99527547 to 99528027 480 CpG island CpG island 7711
Tssr136372 15 99527661 to 99527673 12 - TSS region transcription start site region 136372
Tssr136373 15 99527674 to 99527745 71 - TSS region transcription start site region 136373
Tssr136374 15 99527793 to 99527804 11 - TSS region transcription start site region 136374
Tssr136375 15 99534864 to 99534882 18 - TSS region transcription start site region 136375
Tssr136376 15 99534893 to 99534913 20 - TSS region transcription start site region 136376
Tssr136377 15 99535913 to 99535917 4 - TSS region transcription start site region 136377
Gm5808 15 99555542 to 99556192 650 - pseudogene predicted gene 5808
Gm34765 15 99576722 to 99601527 24805 - lncRNA gene predicted gene, 34765
Cpgi7712 15 99578995 to 99579347 352 CpG island CpG island 7712
Tssr133032 15 99579054 to 99579059 5 + TSS region transcription start site region 133032
Aqp2 15 99579056 to 99584545 5489 + protein coding gene aquaporin 2
Tssr133033 15 99582861 to 99582865 4 + TSS region transcription start site region 133033
Cpgi7713 15 99583638 to 99584490 852 CpG island CpG island 7713
Cpgi7714 15 99590254 to 99591789 1535 CpG island CpG island 7714
Tssr133034 15 99590650 to 99590667 17 + TSS region transcription start site region 133034
Tssr136378 15 99590854 to 99590899 45 - TSS region transcription start site region 136378
Aqp5 15 99591028 to 99594829 3801 + protein coding gene aquaporin 5
Tssr133035 15 99591136 to 99591150 14 + TSS region transcription start site region 133035
Tssr133036 15 99592460 to 99592477 17 + TSS region transcription start site region 133036
Tssr133037 15 99601193 to 99601206 13 + TSS region transcription start site region 133037
Tssr133038 15 99601207 to 99601221 14 + TSS region transcription start site region 133038
Tssr133039 15 99601229 to 99601268 39 + TSS region transcription start site region 133039
Tssr133040 15 99601372 to 99601382 10 + TSS region transcription start site region 133040
Aqp6 15 99601400 to 99605477 4077 + protein coding gene aquaporin 6
Cpgi7715 15 99601504 to 99601744 240 CpG island CpG island 7715
Tssr136379 15 99601583 to 99601589 6 - TSS region transcription start site region 136379
Racgap1 15 99620496 to 99651656 31160 - protein coding gene Rac GTPase-activating protein 1
Tssr136380 15 99628671 to 99628691 20 - TSS region transcription start site region 136380
Tssr136381 15 99632802 to 99632814 12 - TSS region transcription start site region 136381
Tssr136382 15 99633961 to 99633965 4 - TSS region transcription start site region 136382
Tssr136383 15 99637787 to 99637796 9 - TSS region transcription start site region 136383
Tssr136384 15 99637805 to 99637816 11 - TSS region transcription start site region 136384
Cpgi7716 15 99651177 to 99651876 699 CpG island CpG island 7716
Tssr136385 15 99651580 to 99651630 50 - TSS region transcription start site region 136385
Cpgi7717 15 99653748 to 99654045 297 CpG island CpG island 7717
Gm34880 15 99664364 to 99669558 5194 - lncRNA gene predicted gene, 34880
Cpgi7718 15 99664426 to 99665523 1097 CpG island CpG island 7718
Cpgi7719 15 99670061 to 99671465 1404 CpG island CpG island 7719
Tssr133041 15 99670217 to 99670231 14 + TSS region transcription start site region 133041
Tssr133042 15 99670327 to 99670396 69 + TSS region transcription start site region 133042
Asic1 15 99670368 to 99701130 30762 + protein coding gene acid-sensing (proton-gated) ion channel 1
Tssr133043 15 99670403 to 99670419 16 + TSS region transcription start site region 133043
Tssr133044 15 99670574 to 99670634 60 + TSS region transcription start site region 133044
Tssr4713 15 99671115 to 99671123 8 + TSS region transcription start site region 4713
Cpgi7720 15 99671808 to 99672112 304 CpG island CpG island 7720
D15Mit77 15 99674451 to 99674617 166 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 77
Tssr4714 15 99692189 to 99692199 10 + TSS region transcription start site region 4714
Tssr133045 15 99692218 to 99692229 11 + TSS region transcription start site region 133045
Tssr133046 15 99699897 to 99699902 5 + TSS region transcription start site region 133046
Cpgi7721 15 99701824 to 99702831 1007 CpG island CpG island 7721
Tssr133047 15 99702097 to 99702119 22 + TSS region transcription start site region 133047
Tssr133048 15 99702137 to 99702205 68 + TSS region transcription start site region 133048
Gm17349 15 99702176 to 99705490 3314 - protein coding gene predicted gene, 17349
Tssr133049 15 99702278 to 99702312 34 + TSS region transcription start site region 133049
Smarcd1 15 99702287 to 99713995 11708 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Tssr136386 15 99702483 to 99702539 56 - TSS region transcription start site region 136386
Gm34939 15 99702571 to 99703739 1168 - antisense lncRNA gene predicted gene, 34939
Tssr133050 15 99702630 to 99702656 26 + TSS region transcription start site region 133050
Tssr136387 15 99703790 to 99703809 19 - TSS region transcription start site region 136387
Tssr133051 15 99704105 to 99704124 19 + TSS region transcription start site region 133051
Tssr133052 15 99704136 to 99704148 12 + TSS region transcription start site region 133052
Tssr133053 15 99704171 to 99704187 16 + TSS region transcription start site region 133053
Tssr133054 15 99704308 to 99704322 14 + TSS region transcription start site region 133054
Gm17241 15 99706562 to 99706813 251 - pseudogene predicted gene, 17241
Tssr136388 15 99706846 to 99706847 1 - TSS region transcription start site region 136388
Tssr133055 15 99710468 to 99710480 12 + TSS region transcription start site region 133055
Tssr133056 15 99710753 to 99710775 22 + TSS region transcription start site region 133056