Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99444020-100209570

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nckap5l 15 99422035 to 99457748 35713 - protein coding gene NCK-associated protein 5-like
Cpgi7708 15 99457020 to 99458220 1200 CpG island CpG island 7708
Tssr136362 15 99457720 to 99457736 16 - TSS region transcription start site region 136362
Tssr136363 15 99457742 to 99457753 11 - TSS region transcription start site region 136363
Tssr136364 15 99457758 to 99457777 19 - TSS region transcription start site region 136364
Gm49484 15 99457934 to 99465328 7394 - unclassified non-coding RNA gene predicted gene, 49484
Tssr133031 15 99457943 to 99457972 29 + TSS region transcription start site region 133031
Tssr136365 15 99458117 to 99458128 11 - TSS region transcription start site region 136365
Tssr136366 15 99458142 to 99458156 14 - TSS region transcription start site region 136366
Bcdin3d 15 99470084 to 99474730 4646 - protein coding gene BCDIN3 domain containing
Cpgi7709 15 99470246 to 99470810 564 CpG island CpG island 7709
Cpgi7710 15 99474187 to 99474870 683 CpG island CpG island 7710
Tssr136367 15 99474696 to 99474735 39 - TSS region transcription start site region 136367
Gm49485 15 99491824 to 99492224 400 - pseudogene predicted gene, 49485
Faim2 15 99497012 to 99528165 31153 - protein coding gene Fas apoptotic inhibitory molecule 2
Tssr136368 15 99497888 to 99497917 29 - TSS region transcription start site region 136368
Tssr136369 15 99499498 to 99499511 13 - TSS region transcription start site region 136369
Tssr136370 15 99500125 to 99500148 23 - TSS region transcription start site region 136370
Tssr136371 15 99521233 to 99521257 24 - TSS region transcription start site region 136371
Cpgi7711 15 99527547 to 99528027 480 CpG island CpG island 7711
Tssr136372 15 99527661 to 99527673 12 - TSS region transcription start site region 136372
Tssr136373 15 99527674 to 99527745 71 - TSS region transcription start site region 136373
Tssr136374 15 99527793 to 99527804 11 - TSS region transcription start site region 136374
Tssr136375 15 99534864 to 99534882 18 - TSS region transcription start site region 136375
Tssr136376 15 99534893 to 99534913 20 - TSS region transcription start site region 136376
Tssr136377 15 99535913 to 99535917 4 - TSS region transcription start site region 136377
Gm5808 15 99555542 to 99556192 650 - pseudogene predicted gene 5808
Gm34765 15 99576722 to 99601527 24805 - lncRNA gene predicted gene, 34765
Cpgi7712 15 99578995 to 99579347 352 CpG island CpG island 7712
Tssr133032 15 99579054 to 99579059 5 + TSS region transcription start site region 133032
Aqp2 15 99579056 to 99584545 5489 + protein coding gene aquaporin 2
Tssr133033 15 99582861 to 99582865 4 + TSS region transcription start site region 133033
Cpgi7713 15 99583638 to 99584490 852 CpG island CpG island 7713
Cpgi7714 15 99590254 to 99591789 1535 CpG island CpG island 7714
Tssr133034 15 99590650 to 99590667 17 + TSS region transcription start site region 133034
Tssr136378 15 99590854 to 99590899 45 - TSS region transcription start site region 136378
Aqp5 15 99591028 to 99594829 3801 + protein coding gene aquaporin 5
Tssr133035 15 99591136 to 99591150 14 + TSS region transcription start site region 133035
Tssr133036 15 99592460 to 99592477 17 + TSS region transcription start site region 133036
Tssr133037 15 99601193 to 99601206 13 + TSS region transcription start site region 133037
Tssr133038 15 99601207 to 99601221 14 + TSS region transcription start site region 133038
Tssr133039 15 99601229 to 99601268 39 + TSS region transcription start site region 133039
Tssr133040 15 99601372 to 99601382 10 + TSS region transcription start site region 133040
Aqp6 15 99601400 to 99605477 4077 + protein coding gene aquaporin 6
Cpgi7715 15 99601504 to 99601744 240 CpG island CpG island 7715
Tssr136379 15 99601583 to 99601589 6 - TSS region transcription start site region 136379
Racgap1 15 99620496 to 99651656 31160 - protein coding gene Rac GTPase-activating protein 1
Tssr136380 15 99628671 to 99628691 20 - TSS region transcription start site region 136380
Tssr136381 15 99632802 to 99632814 12 - TSS region transcription start site region 136381
Tssr136382 15 99633961 to 99633965 4 - TSS region transcription start site region 136382
Tssr136383 15 99637787 to 99637796 9 - TSS region transcription start site region 136383
Tssr136384 15 99637805 to 99637816 11 - TSS region transcription start site region 136384
Cpgi7716 15 99651177 to 99651876 699 CpG island CpG island 7716
Tssr136385 15 99651580 to 99651630 50 - TSS region transcription start site region 136385
Cpgi7717 15 99653748 to 99654045 297 CpG island CpG island 7717
Gm34880 15 99664364 to 99669558 5194 - lncRNA gene predicted gene, 34880
Cpgi7718 15 99664426 to 99665523 1097 CpG island CpG island 7718
Cpgi7719 15 99670061 to 99671465 1404 CpG island CpG island 7719
Tssr133041 15 99670217 to 99670231 14 + TSS region transcription start site region 133041
Tssr133042 15 99670327 to 99670396 69 + TSS region transcription start site region 133042
Asic1 15 99670368 to 99701130 30762 + protein coding gene acid-sensing (proton-gated) ion channel 1
Tssr133043 15 99670403 to 99670419 16 + TSS region transcription start site region 133043
Tssr133044 15 99670574 to 99670634 60 + TSS region transcription start site region 133044
Tssr4713 15 99671115 to 99671123 8 + TSS region transcription start site region 4713
Cpgi7720 15 99671808 to 99672112 304 CpG island CpG island 7720
D15Mit77 15 99674451 to 99674617 166 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 77
Tssr4714 15 99692189 to 99692199 10 + TSS region transcription start site region 4714
Tssr133045 15 99692218 to 99692229 11 + TSS region transcription start site region 133045
Tssr133046 15 99699897 to 99699902 5 + TSS region transcription start site region 133046
Cpgi7721 15 99701824 to 99702831 1007 CpG island CpG island 7721
Tssr133047 15 99702097 to 99702119 22 + TSS region transcription start site region 133047
Tssr133048 15 99702137 to 99702205 68 + TSS region transcription start site region 133048
Gm17349 15 99702176 to 99705490 3314 - protein coding gene predicted gene, 17349
Tssr133049 15 99702278 to 99702312 34 + TSS region transcription start site region 133049
Smarcd1 15 99702287 to 99713995 11708 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Tssr136386 15 99702483 to 99702539 56 - TSS region transcription start site region 136386
Gm34939 15 99702571 to 99703739 1168 - antisense lncRNA gene predicted gene, 34939
Tssr133050 15 99702630 to 99702656 26 + TSS region transcription start site region 133050
Tssr136387 15 99703790 to 99703809 19 - TSS region transcription start site region 136387
Tssr133051 15 99704105 to 99704124 19 + TSS region transcription start site region 133051
Tssr133052 15 99704136 to 99704148 12 + TSS region transcription start site region 133052
Tssr133053 15 99704171 to 99704187 16 + TSS region transcription start site region 133053
Tssr133054 15 99704308 to 99704322 14 + TSS region transcription start site region 133054
Gm17241 15 99706562 to 99706813 251 - pseudogene predicted gene, 17241
Tssr136388 15 99706846 to 99706847 1 - TSS region transcription start site region 136388
Tssr133055 15 99710468 to 99710480 12 + TSS region transcription start site region 133055
Tssr133056 15 99710753 to 99710775 22 + TSS region transcription start site region 133056
Tssr133057 15 99712667 to 99712690 23 + TSS region transcription start site region 133057
Tssr133058 15 99712804 to 99712821 17 + TSS region transcription start site region 133058
Gm16537 15 99715534 to 99722156 6622 - antisense lncRNA gene predicted gene 16537
Tssr133059 15 99717578 to 99717594 16 + TSS region transcription start site region 133059
Gdcr1 15 99717593 to 99725008 7415 QTL glycerolphosphate dehydrogenase regulator 1
Gpd1 15 99717593 to 99725008 7415 + protein coding gene glycerol-3-phosphate dehydrogenase 1 (soluble)
Tssr133060 15 99718962 to 99718965 3 + TSS region transcription start site region 133060
Tssr133061 15 99719123 to 99719138 15 + TSS region transcription start site region 133061
Tssr133062 15 99719140 to 99719164 24 + TSS region transcription start site region 133062
D15Mit14 15 99721627 to 99721813 186 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 14
Tssr133063 15 99723425 to 99723442 17 + TSS region transcription start site region 133063
Tssr133064 15 99723703 to 99723754 51 + TSS region transcription start site region 133064
Tssr136389 15 99723780 to 99723811 31 - TSS region transcription start site region 136389
Tssr133065 15 99723833 to 99723857 24 + TSS region transcription start site region 133065
Tssr133066 15 99723980 to 99723994 14 + TSS region transcription start site region 133066
Cpgi7722 15 99725254 to 99726249 995 CpG island CpG island 7722
Tssr133067 15 99725616 to 99725685 69 + TSS region transcription start site region 133067
Cox14 15 99725618 to 99728136 2518 + protein coding gene cytochrome c oxidase assembly protein 14
Tssr133068 15 99725698 to 99725712 14 + TSS region transcription start site region 133068
Tssr133069 15 99725720 to 99725737 17 + TSS region transcription start site region 133069
Tssr133070 15 99725747 to 99725767 20 + TSS region transcription start site region 133070
Tssr133071 15 99725769 to 99725815 46 + TSS region transcription start site region 133071
Cers5 15 99735592 to 99772515 36923 - protein coding gene ceramide synthase 5
Gm17058 15 99765991 to 99782332 16341 + antisense lncRNA gene predicted gene 17058
Cpgi7723 15 99771606 to 99772847 1241 CpG island CpG island 7723
Tssr136390 15 99772395 to 99772458 63 - TSS region transcription start site region 136390
Tssr136391 15 99772531 to 99772542 11 - TSS region transcription start site region 136391
Tssr136392 15 99772596 to 99772608 12 - TSS region transcription start site region 136392
Tssr136393 15 99772871 to 99772902 31 - TSS region transcription start site region 136393
Lima1 15 99778470 to 99875456 96986 - protein coding gene LIM domain and actin binding 1
Tssr136394 15 99780372 to 99780378 6 - TSS region transcription start site region 136394
Cpgi7724 15 99780562 to 99781105 543 CpG island CpG island 7724
Tssr136395 15 99780566 to 99780585 19 - TSS region transcription start site region 136395
Tssr136396 15 99788871 to 99788873 2 - TSS region transcription start site region 136396
Gm25897 15 99803020 to 99803126 106 - snRNA gene predicted gene, 25897
Gm4468 15 99810289 to 99810582 293 - pseudogene predicted gene 4468
Gm17057 15 99819020 to 99834570 15550 + antisense lncRNA gene predicted gene 17057
Tssr136397 15 99819700 to 99819715 15 - TSS region transcription start site region 136397
Tssr136398 15 99819819 to 99819835 16 - TSS region transcription start site region 136398
Tssr136399 15 99819932 to 99819939 7 - TSS region transcription start site region 136399
Tssr136400 15 99820027 to 99820032 5 - TSS region transcription start site region 136400
Tssr136401 15 99820072 to 99820154 82 - TSS region transcription start site region 136401
Tssr136402 15 99821048 to 99821078 30 - TSS region transcription start site region 136402
Tssr133072 15 99821130 to 99821170 40 + TSS region transcription start site region 133072
Tssr136403 15 99853689 to 99853694 5 - TSS region transcription start site region 136403
Cpgi7725 15 99865446 to 99865700 254 CpG island CpG island 7725
Cpgi7726 15 99875065 to 99875735 670 CpG island CpG island 7726
Tssr136404 15 99875382 to 99875447 65 - TSS region transcription start site region 136404
Gm49494 15 99875540 to 99877595 2055 + unclassified non-coding RNA gene predicted gene, 49494
Tssr133073 15 99875564 to 99875621 57 + TSS region transcription start site region 133073
Gm18095 15 99880199 to 99880803 604 + pseudogene predicted gene, 18095
Gm18890 15 99883632 to 99884430 798 + pseudogene predicted gene, 18890
Uqcrh-ps1 15 99898289 to 99898556 267 - pseudogene ubiquinol-cytochrome c reductase hinge protein, pseudogene 1
Tssr133074 15 99902936 to 99902957 21 + TSS region transcription start site region 133074
Gm49495 15 99902963 to 99904276 1313 + unclassified gene predicted gene, 49495
1700121M21Rik 15 99914369 to 99920299 5930 + lncRNA gene RIKEN cDNA 1700121M21 gene
Gm20564 15 99915428 to 99915900 472 - pseudogene predicted gene, 20564
Tssr136405 15 99915934 to 99915938 4 - TSS region transcription start site region 136405
Fam186a 15 99918348 to 99931658 13310 - protein coding gene family with sequence similarity 186, member A
Cpgi7727 15 99931528 to 99931740 212 CpG island CpG island 7727
Tssr136406 15 99931645 to 99931673 28 - TSS region transcription start site region 136406
Tssr133075 15 99931679 to 99931695 16 + TSS region transcription start site region 133075
Gm21917 15 99931711 to 99953044 21333 + antisense lncRNA gene predicted gene, 21917
Tssr136407 15 99931784 to 99931803 19 - TSS region transcription start site region 136407
Gm23133 15 99937307 to 99937441 134 - snRNA gene predicted gene, 23133
Tssr136408 15 99967055 to 99967066 11 - TSS region transcription start site region 136408
Tssr136409 15 99967067 to 99967077 10 - TSS region transcription start site region 136409
Tssr136410 15 99967081 to 99967087 6 - TSS region transcription start site region 136410
2310068J16Rik 15 99972167 to 99973287 1120 - antisense lncRNA gene RIKEN cDNA 2310068J16 gene
Cpgi7728 15 99972502 to 99973851 1349 CpG island CpG island 7728
Tssr136411 15 99972714 to 99972738 24 - TSS region transcription start site region 136411
Tssr133076 15 99972810 to 99972821 11 + TSS region transcription start site region 133076
Tssr133077 15 99972834 to 99972896 62 + TSS region transcription start site region 133077
Tssr133078 15 99972906 to 99972925 19 + TSS region transcription start site region 133078
Tssr133079 15 100005145 to 100005160 15 + TSS region transcription start site region 133079
Larp4 15 100016358 to 99970065 -46293 + protein coding gene La ribonucleoprotein domain family, member 4
Cpgi7729 15 100038260 to 100039436 1176 CpG island CpG island 7729
Tssr133080 15 100038635 to 100038669 34 + TSS region transcription start site region 133080
Dip2b 15 100038664 to 100219473 180809 + protein coding gene disco interacting protein 2 homolog B
Tssr133081 15 100038674 to 100038721 47 + TSS region transcription start site region 133081
Tssr133082 15 100038747 to 100038808 61 + TSS region transcription start site region 133082
Tssr136412 15 100041397 to 100041412 15 - TSS region transcription start site region 136412
Tssr133083 15 100060245 to 100060258 13 + TSS region transcription start site region 133083
Tssr4715 15 100063608 to 100063614 6 + TSS region transcription start site region 4715
Tssr133084 15 100067501 to 100067513 12 + TSS region transcription start site region 133084
Tssr133085 15 100075104 to 100075122 18 + TSS region transcription start site region 133085
Tssr4716 15 100084211 to 100084248 37 + TSS region transcription start site region 4716
Gm49474 15 100089891 to 100091757 1866 - unclassified gene predicted gene, 49474
Cpgi7730 15 100091994 to 100092547 553 CpG island CpG island 7730
9430088F21Rik 15 100093451 to 100096226 2775 unclassified gene RIKEN cDNA 9430088F21 gene
4930478M13Rik 15 100105234 to 100108161 2927 - antisense lncRNA gene RIKEN cDNA 4930478M13 gene
Cpgi7731 15 100108508 to 100108690 182 CpG island CpG island 7731
Tssr133086 15 100154169 to 100154214 45 + TSS region transcription start site region 133086
Tssr133087 15 100154379 to 100154411 32 + TSS region transcription start site region 133087
Tssr133088 15 100156974 to 100156979 5 + TSS region transcription start site region 133088
Tssr133089 15 100181437 to 100181448 11 + TSS region transcription start site region 133089
Tssr133090 15 100182273 to 100182314 41 + TSS region transcription start site region 133090
Gm49475 15 100189900 to 100195311 5411 - antisense lncRNA gene predicted gene, 49475
Tssr133091 15 100198639 to 100198654 15 + TSS region transcription start site region 133091
Tssr133092 15 100199280 to 100199296 16 + TSS region transcription start site region 133092
Tssr133093 15 100202100 to 100202107 7 + TSS region transcription start site region 133093