Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99422793-99632804

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nckap5l 15 99422035 to 99457748 35713 - protein coding gene NCK-associated protein 5-like
Tssr136360 15 99424534 to 99424549 15 - TSS region transcription start site region 136360
Cpgi7707 15 99425682 to 99425975 293 CpG island CpG island 7707
Nckap5los 15 99432831 to 99435252 2421 + antisense lncRNA gene NCK-associated protein 5-like, opposite strand
Tssr136361 15 99435649 to 99435652 3 - TSS region transcription start site region 136361
Cpgi7708 15 99457020 to 99458220 1200 CpG island CpG island 7708
Tssr136362 15 99457720 to 99457736 16 - TSS region transcription start site region 136362
Tssr136363 15 99457742 to 99457753 11 - TSS region transcription start site region 136363
Tssr136364 15 99457758 to 99457777 19 - TSS region transcription start site region 136364
Gm49484 15 99457934 to 99465328 7394 - unclassified non-coding RNA gene predicted gene, 49484
Tssr133031 15 99457943 to 99457972 29 + TSS region transcription start site region 133031
Tssr136365 15 99458117 to 99458128 11 - TSS region transcription start site region 136365
Tssr136366 15 99458142 to 99458156 14 - TSS region transcription start site region 136366
Bcdin3d 15 99470084 to 99474730 4646 - protein coding gene BCDIN3 domain containing
Cpgi7709 15 99470246 to 99470810 564 CpG island CpG island 7709
Cpgi7710 15 99474187 to 99474870 683 CpG island CpG island 7710
Tssr136367 15 99474696 to 99474735 39 - TSS region transcription start site region 136367
Gm49485 15 99491824 to 99492224 400 - pseudogene predicted gene, 49485
Faim2 15 99497012 to 99528165 31153 - protein coding gene Fas apoptotic inhibitory molecule 2
Tssr136368 15 99497888 to 99497917 29 - TSS region transcription start site region 136368
Tssr136369 15 99499498 to 99499511 13 - TSS region transcription start site region 136369
Tssr136370 15 99500125 to 99500148 23 - TSS region transcription start site region 136370
Tssr136371 15 99521233 to 99521257 24 - TSS region transcription start site region 136371
Cpgi7711 15 99527547 to 99528027 480 CpG island CpG island 7711
Tssr136372 15 99527661 to 99527673 12 - TSS region transcription start site region 136372
Tssr136373 15 99527674 to 99527745 71 - TSS region transcription start site region 136373
Tssr136374 15 99527793 to 99527804 11 - TSS region transcription start site region 136374
Tssr136375 15 99534864 to 99534882 18 - TSS region transcription start site region 136375
Tssr136376 15 99534893 to 99534913 20 - TSS region transcription start site region 136376
Tssr136377 15 99535913 to 99535917 4 - TSS region transcription start site region 136377
Gm5808 15 99555542 to 99556192 650 - pseudogene predicted gene 5808
Gm34765 15 99576722 to 99601527 24805 - lncRNA gene predicted gene, 34765
Cpgi7712 15 99578995 to 99579347 352 CpG island CpG island 7712
Tssr133032 15 99579054 to 99579059 5 + TSS region transcription start site region 133032
Aqp2 15 99579056 to 99584545 5489 + protein coding gene aquaporin 2
Tssr133033 15 99582861 to 99582865 4 + TSS region transcription start site region 133033
Cpgi7713 15 99583638 to 99584490 852 CpG island CpG island 7713
Cpgi7714 15 99590254 to 99591789 1535 CpG island CpG island 7714
Tssr133034 15 99590650 to 99590667 17 + TSS region transcription start site region 133034
Tssr136378 15 99590854 to 99590899 45 - TSS region transcription start site region 136378
Aqp5 15 99591028 to 99594829 3801 + protein coding gene aquaporin 5
Tssr133035 15 99591136 to 99591150 14 + TSS region transcription start site region 133035
Tssr133036 15 99592460 to 99592477 17 + TSS region transcription start site region 133036
Tssr133037 15 99601193 to 99601206 13 + TSS region transcription start site region 133037
Tssr133038 15 99601207 to 99601221 14 + TSS region transcription start site region 133038
Tssr133039 15 99601229 to 99601268 39 + TSS region transcription start site region 133039
Tssr133040 15 99601372 to 99601382 10 + TSS region transcription start site region 133040
Aqp6 15 99601400 to 99605477 4077 + protein coding gene aquaporin 6
Cpgi7715 15 99601504 to 99601744 240 CpG island CpG island 7715
Tssr136379 15 99601583 to 99601589 6 - TSS region transcription start site region 136379
Racgap1 15 99620496 to 99651656 31160 - protein coding gene Rac GTPase-activating protein 1
Tssr136380 15 99628671 to 99628691 20 - TSS region transcription start site region 136380
Tssr136381 15 99632802 to 99632814 12 - TSS region transcription start site region 136381