Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99209481-99380691

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
Spats2 15 99125926 to 99213215 87289 + protein coding gene spermatogenesis associated, serine-rich 2
Tssr132999 15 99212522 to 99212525 3 + TSS region transcription start site region 132999
Gm46538 15 99213320 to 99225327 12007 - lncRNA gene predicted gene, 46538
Tssr133000 15 99215142 to 99215187 45 + TSS region transcription start site region 133000
Cpgi7699 15 99223438 to 99225526 2088 CpG island CpG island 7699
Tssr133001 15 99224545 to 99224573 28 + TSS region transcription start site region 133001
Tssr133002 15 99224579 to 99224618 39 + TSS region transcription start site region 133002
Kcnh3 15 99224861 to 99242817 17956 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 3
Tssr133003 15 99228532 to 99228541 9 + TSS region transcription start site region 133003
Tssr133004 15 99233890 to 99233904 14 + TSS region transcription start site region 133004
Cpgi7700 15 99233897 to 99234095 198 CpG island CpG island 7700
Tssr133005 15 99235265 to 99235269 4 + TSS region transcription start site region 133005
Mcrs1 15 99242817 to 99251961 9144 - protein coding gene microspherule protein 1
Tssr136351 15 99248934 to 99248947 13 - TSS region transcription start site region 136351
Tssr136352 15 99248952 to 99248972 20 - TSS region transcription start site region 136352
Tssr133006 15 99249242 to 99249259 17 + TSS region transcription start site region 133006
Tssr133007 15 99249468 to 99249504 36 + TSS region transcription start site region 133007
Gm34338 15 99249506 to 99284416 34910 + lncRNA gene predicted gene, 34338
Tssr133008 15 99249589 to 99249608 19 + TSS region transcription start site region 133008
Cpgi7701 15 99251662 to 99252716 1054 CpG island CpG island 7701
1700120C14Rik 15 99251788 to 99262041 10253 + lncRNA gene RIKEN cDNA 1700120C14 gene
Tssr136353 15 99251913 to 99251924 11 - TSS region transcription start site region 136353
Tssr136354 15 99251929 to 99251968 39 - TSS region transcription start site region 136354
Gm34447 15 99252010 to 99252883 873 + lncRNA gene predicted gene, 34447
Gm49458 15 99254525 to 99254835 310 - pseudogene predicted gene, 49458
Gm25999 15 99254882 to 99255014 132 - snoRNA gene predicted gene, 25999
Fam186b 15 99271018 to 99295885 24867 - protein coding gene family with sequence similarity 186, member B
Tssr133009 15 99276280 to 99276290 10 + TSS region transcription start site region 133009
Tssr136355 15 99287174 to 99287185 11 - TSS region transcription start site region 136355
Tssr136356 15 99287198 to 99287201 3 - TSS region transcription start site region 136356
Cpgi7702 15 99294481 to 99295691 1210 CpG island CpG island 7702
Prpf40b 15 99295087 to 99317018 21931 + protein coding gene pre-mRNA processing factor 40B
Tssr133010 15 99295211 to 99295279 68 + TSS region transcription start site region 133010
Fmnl3 15 99317225 to 99370482 53257 - protein coding gene formin-like 3
Gm49478 15 99348821 to 99349535 714 - pseudogene predicted gene, 49478
D15Mit263 15 99363421 to 99363692 271 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 263
Gm22951 15 99368029 to 99368135 106 - snRNA gene predicted gene, 22951
Cpgi7703 15 99369791 to 99370838 1047 CpG island CpG island 7703
Tssr136357 15 99370349 to 99370381 32 - TSS region transcription start site region 136357
Tssr136358 15 99370427 to 99370489 62 - TSS region transcription start site region 136358
Cpgi7704 15 99380464 to 99380854 390 CpG island CpG island 7704
Shar 15 102988123 to 99363421 -3624702 heritable phenotypic marker shiny and rough