Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99143611-99643637

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
Spats2 15 99125926 to 99213215 87289 + protein coding gene spermatogenesis associated, serine-rich 2
Gm25057 15 99174850 to 99174937 87 - unclassified non-coding RNA gene predicted gene, 25057
Tssr132999 15 99212522 to 99212525 3 + TSS region transcription start site region 132999
Gm46538 15 99213320 to 99225327 12007 - lncRNA gene predicted gene, 46538
Tssr133000 15 99215142 to 99215187 45 + TSS region transcription start site region 133000
Cpgi7699 15 99223438 to 99225526 2088 CpG island CpG island 7699
Tssr133001 15 99224545 to 99224573 28 + TSS region transcription start site region 133001
Tssr133002 15 99224579 to 99224618 39 + TSS region transcription start site region 133002
Kcnh3 15 99224861 to 99242817 17956 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 3
Tssr133003 15 99228532 to 99228541 9 + TSS region transcription start site region 133003
Tssr133004 15 99233890 to 99233904 14 + TSS region transcription start site region 133004
Cpgi7700 15 99233897 to 99234095 198 CpG island CpG island 7700
Tssr133005 15 99235265 to 99235269 4 + TSS region transcription start site region 133005
Mcrs1 15 99242817 to 99251961 9144 - protein coding gene microspherule protein 1
Tssr136351 15 99248934 to 99248947 13 - TSS region transcription start site region 136351
Tssr136352 15 99248952 to 99248972 20 - TSS region transcription start site region 136352
Tssr133006 15 99249242 to 99249259 17 + TSS region transcription start site region 133006
Tssr133007 15 99249468 to 99249504 36 + TSS region transcription start site region 133007
Gm34338 15 99249506 to 99284416 34910 + lncRNA gene predicted gene, 34338
Tssr133008 15 99249589 to 99249608 19 + TSS region transcription start site region 133008
Cpgi7701 15 99251662 to 99252716 1054 CpG island CpG island 7701
1700120C14Rik 15 99251788 to 99262041 10253 + lncRNA gene RIKEN cDNA 1700120C14 gene
Tssr136353 15 99251913 to 99251924 11 - TSS region transcription start site region 136353
Tssr136354 15 99251929 to 99251968 39 - TSS region transcription start site region 136354
Gm34447 15 99252010 to 99252883 873 + lncRNA gene predicted gene, 34447
Gm49458 15 99254525 to 99254835 310 - pseudogene predicted gene, 49458
Gm25999 15 99254882 to 99255014 132 - snoRNA gene predicted gene, 25999
Fam186b 15 99271018 to 99295885 24867 - protein coding gene family with sequence similarity 186, member B
Tssr133009 15 99276280 to 99276290 10 + TSS region transcription start site region 133009
Tssr136355 15 99287174 to 99287185 11 - TSS region transcription start site region 136355
Tssr136356 15 99287198 to 99287201 3 - TSS region transcription start site region 136356
Cpgi7702 15 99294481 to 99295691 1210 CpG island CpG island 7702
Prpf40b 15 99295087 to 99317018 21931 + protein coding gene pre-mRNA processing factor 40B
Tssr133010 15 99295211 to 99295279 68 + TSS region transcription start site region 133010
Fmnl3 15 99317225 to 99370482 53257 - protein coding gene formin-like 3
Gm49478 15 99348821 to 99349535 714 - pseudogene predicted gene, 49478
D15Mit263 15 99363421 to 99363692 271 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 263
Gm22951 15 99368029 to 99368135 106 - snRNA gene predicted gene, 22951
Cpgi7703 15 99369791 to 99370838 1047 CpG island CpG island 7703
Tssr136357 15 99370349 to 99370381 32 - TSS region transcription start site region 136357
Tssr136358 15 99370427 to 99370489 62 - TSS region transcription start site region 136358
Cpgi7704 15 99380464 to 99380854 390 CpG island CpG island 7704
Cpgi7705 15 99381184 to 99381493 309 CpG island CpG island 7705
Cpgi7706 15 99392824 to 99393701 877 CpG island CpG island 7706
Tssr133011 15 99392889 to 99392903 14 + TSS region transcription start site region 133011
Tmbim6 15 99392947 to 99410049 17102 + protein coding gene transmembrane BAX inhibitor motif containing 6
Tssr133012 15 99392948 to 99392987 39 + TSS region transcription start site region 133012
Tssr133013 15 99393232 to 99393248 16 + TSS region transcription start site region 133013
Tssr133014 15 99393255 to 99393279 24 + TSS region transcription start site region 133014
Tssr133015 15 99393574 to 99393599 25 + TSS region transcription start site region 133015
Tssr133016 15 99393600 to 99393607 7 + TSS region transcription start site region 133016
Tssr133017 15 99393611 to 99393637 26 + TSS region transcription start site region 133017
Tssr133018 15 99393951 to 99393988 37 + TSS region transcription start site region 133018
Tssr133019 15 99397878 to 99397883 5 + TSS region transcription start site region 133019
Tssr133020 15 99399769 to 99399803 34 + TSS region transcription start site region 133020
Tssr133021 15 99401811 to 99401826 15 + TSS region transcription start site region 133021
Tssr133022 15 99402121 to 99402143 22 + TSS region transcription start site region 133022
Tssr133023 15 99404409 to 99404434 25 + TSS region transcription start site region 133023
Tssr133024 15 99405849 to 99405877 28 + TSS region transcription start site region 133024
Tssr133025 15 99405898 to 99405929 31 + TSS region transcription start site region 133025
Tssr133026 15 99406146 to 99406157 11 + TSS region transcription start site region 133026
Tssr133027 15 99406191 to 99406200 9 + TSS region transcription start site region 133027
Tssr133028 15 99406568 to 99406631 63 + TSS region transcription start site region 133028
Tssr136359 15 99406655 to 99406678 23 - TSS region transcription start site region 136359
Tssr133029 15 99408528 to 99408553 25 + TSS region transcription start site region 133029
Tssr133030 15 99408699 to 99408714 15 + TSS region transcription start site region 133030
Gm49483 15 99413474 to 99413693 219 + pseudogene predicted gene, 49483
Nckap5l 15 99422035 to 99457748 35713 - protein coding gene NCK-associated protein 5-like
Tssr136360 15 99424534 to 99424549 15 - TSS region transcription start site region 136360
Cpgi7707 15 99425682 to 99425975 293 CpG island CpG island 7707
Nckap5los 15 99432831 to 99435252 2421 + antisense lncRNA gene NCK-associated protein 5-like, opposite strand
Tssr136361 15 99435649 to 99435652 3 - TSS region transcription start site region 136361
Cpgi7708 15 99457020 to 99458220 1200 CpG island CpG island 7708
Tssr136362 15 99457720 to 99457736 16 - TSS region transcription start site region 136362
Tssr136363 15 99457742 to 99457753 11 - TSS region transcription start site region 136363
Tssr136364 15 99457758 to 99457777 19 - TSS region transcription start site region 136364
Gm49484 15 99457934 to 99465328 7394 - unclassified non-coding RNA gene predicted gene, 49484
Tssr133031 15 99457943 to 99457972 29 + TSS region transcription start site region 133031
Tssr136365 15 99458117 to 99458128 11 - TSS region transcription start site region 136365
Tssr136366 15 99458142 to 99458156 14 - TSS region transcription start site region 136366
Bcdin3d 15 99470084 to 99474730 4646 - protein coding gene BCDIN3 domain containing
Cpgi7709 15 99470246 to 99470810 564 CpG island CpG island 7709
Cpgi7710 15 99474187 to 99474870 683 CpG island CpG island 7710
Tssr136367 15 99474696 to 99474735 39 - TSS region transcription start site region 136367
Gm49485 15 99491824 to 99492224 400 - pseudogene predicted gene, 49485
Faim2 15 99497012 to 99528165 31153 - protein coding gene Fas apoptotic inhibitory molecule 2
Tssr136368 15 99497888 to 99497917 29 - TSS region transcription start site region 136368
Tssr136369 15 99499498 to 99499511 13 - TSS region transcription start site region 136369
Tssr136370 15 99500125 to 99500148 23 - TSS region transcription start site region 136370
Tssr136371 15 99521233 to 99521257 24 - TSS region transcription start site region 136371
Cpgi7711 15 99527547 to 99528027 480 CpG island CpG island 7711
Tssr136372 15 99527661 to 99527673 12 - TSS region transcription start site region 136372
Tssr136373 15 99527674 to 99527745 71 - TSS region transcription start site region 136373
Tssr136374 15 99527793 to 99527804 11 - TSS region transcription start site region 136374
Tssr136375 15 99534864 to 99534882 18 - TSS region transcription start site region 136375
Tssr136376 15 99534893 to 99534913 20 - TSS region transcription start site region 136376
Tssr136377 15 99535913 to 99535917 4 - TSS region transcription start site region 136377
Gm5808 15 99555542 to 99556192 650 - pseudogene predicted gene 5808
Gm34765 15 99576722 to 99601527 24805 - lncRNA gene predicted gene, 34765
Cpgi7712 15 99578995 to 99579347 352 CpG island CpG island 7712
Tssr133032 15 99579054 to 99579059 5 + TSS region transcription start site region 133032
Aqp2 15 99579056 to 99584545 5489 + protein coding gene aquaporin 2
Tssr133033 15 99582861 to 99582865 4 + TSS region transcription start site region 133033
Cpgi7713 15 99583638 to 99584490 852 CpG island CpG island 7713
Cpgi7714 15 99590254 to 99591789 1535 CpG island CpG island 7714
Tssr133034 15 99590650 to 99590667 17 + TSS region transcription start site region 133034
Tssr136378 15 99590854 to 99590899 45 - TSS region transcription start site region 136378
Aqp5 15 99591028 to 99594829 3801 + protein coding gene aquaporin 5
Tssr133035 15 99591136 to 99591150 14 + TSS region transcription start site region 133035
Tssr133036 15 99592460 to 99592477 17 + TSS region transcription start site region 133036
Tssr133037 15 99601193 to 99601206 13 + TSS region transcription start site region 133037
Tssr133038 15 99601207 to 99601221 14 + TSS region transcription start site region 133038
Tssr133039 15 99601229 to 99601268 39 + TSS region transcription start site region 133039
Tssr133040 15 99601372 to 99601382 10 + TSS region transcription start site region 133040
Aqp6 15 99601400 to 99605477 4077 + protein coding gene aquaporin 6
Cpgi7715 15 99601504 to 99601744 240 CpG island CpG island 7715
Tssr136379 15 99601583 to 99601589 6 - TSS region transcription start site region 136379
Racgap1 15 99620496 to 99651656 31160 - protein coding gene Rac GTPase-activating protein 1
Tssr136380 15 99628671 to 99628691 20 - TSS region transcription start site region 136380
Tssr136381 15 99632802 to 99632814 12 - TSS region transcription start site region 136381
Tssr136382 15 99633961 to 99633965 4 - TSS region transcription start site region 136382
Tssr136383 15 99637787 to 99637796 9 - TSS region transcription start site region 136383
Tssr136384 15 99637805 to 99637816 11 - TSS region transcription start site region 136384
Shar 15 102988123 to 99363421 -3624702 heritable phenotypic marker shiny and rough