Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:99008067-99258172

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41398 15 99015369 to 99024411 9042 - lncRNA gene predicted gene, 41398
Cpgi7688 15 99029793 to 99030893 1100 CpG island CpG island 7688
Tssr132980 15 99029866 to 99029913 47 + TSS region transcription start site region 132980
Tuba1c 15 99029891 to 99038105 8214 + protein coding gene tubulin, alpha 1C
Tssr132981 15 99029915 to 99029924 9 + TSS region transcription start site region 132981
Tssr132982 15 99029928 to 99029949 21 + TSS region transcription start site region 132982
Tssr132983 15 99030287 to 99030297 10 + TSS region transcription start site region 132983
Tssr132984 15 99030312 to 99030328 16 + TSS region transcription start site region 132984
Tssr132985 15 99030377 to 99030397 20 + TSS region transcription start site region 132985
Tssr132986 15 99030856 to 99030868 12 + TSS region transcription start site region 132986
Tssr132987 15 99033747 to 99033756 9 + TSS region transcription start site region 132987
Cpgi7689 15 99040106 to 99040370 264 CpG island CpG island 7689
Gm41399 15 99041236 to 99051157 9921 + lncRNA gene predicted gene, 41399
D15Jcs28 15 99047824 to 99048119 295 DNA segment DNA segment, Chr 15, John C. Schimenti 28
Cpgi7690 15 99054932 to 99057518 2586 CpG island CpG island 7690
Tssr132988 15 99055164 to 99055183 19 + TSS region transcription start site region 132988
Prph 15 99055174 to 99058978 3804 + protein coding gene peripherin
Tssr132989 15 99055895 to 99055916 21 + TSS region transcription start site region 132989
D15Mit42 15 99056585 to 99056770 185 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 42
Gm34284 15 99068138 to 99074669 6531 - antisense lncRNA gene predicted gene, 34284
Cpgi7691 15 99074529 to 99075231 702 CpG island CpG island 7691
Tssr132990 15 99074968 to 99075005 37 + TSS region transcription start site region 132990
Troap 15 99074973 to 99083409 8436 + protein coding gene trophinin associated protein
Tssr132991 15 99075006 to 99075022 16 + TSS region transcription start site region 132991
Mir6960 15 99080805 to 99080865 60 + miRNA gene microRNA 6960
C1ql4 15 99084086 to 99087817 3731 - protein coding gene complement component 1, q subcomponent-like 4
Cpgi7692 15 99084618 to 99084935 317 CpG island CpG island 7692
Cpgi7693 15 99087093 to 99088622 1529 CpG island CpG island 7693
Tssr136348 15 99088426 to 99088429 3 - TSS region transcription start site region 136348
Cpgi7694 15 99093232 to 99094228 996 CpG island CpG island 7694
Cpgi7695 15 99094821 to 99095274 453 CpG island CpG island 7695
Cpgi7696 15 99096421 to 99098729 2308 CpG island CpG island 7696
Tssr136349 15 99096860 to 99096861 1 - TSS region transcription start site region 136349
Cpgi7697 15 99099110 to 99099415 305 CpG island CpG island 7697
Dnajc22 15 99099134 to 99104737 5603 + protein coding gene DnaJ heat shock protein family (Hsp40) member C22
Tssr132992 15 99099451 to 99099482 31 + TSS region transcription start site region 132992
Tssr132993 15 99099487 to 99099524 37 + TSS region transcription start site region 132993
D15Mit44 15 99121283 to 99121446 163 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 44
Cpgi7698 15 99125814 to 99127305 1491 CpG island CpG island 7698
Tssr132994 15 99125893 to 99125909 16 + TSS region transcription start site region 132994
Spats2 15 99125926 to 99213215 87289 + protein coding gene spermatogenesis associated, serine-rich 2
Tssr132995 15 99126513 to 99126616 103 + TSS region transcription start site region 132995
Tssr132996 15 99126618 to 99126640 22 + TSS region transcription start site region 132996
Tssr132997 15 99126736 to 99126770 34 + TSS region transcription start site region 132997
Tssr132998 15 99126782 to 99126822 40 + TSS region transcription start site region 132998
Gm25183 15 99133067 to 99133172 105 - snoRNA gene predicted gene, 25183
Gm46537 15 99135620 to 99136172 552 - pseudogene predicted gene, 46537
Tssr136350 15 99136095 to 99136098 3 - TSS region transcription start site region 136350
Gm25057 15 99174850 to 99174937 87 - unclassified non-coding RNA gene predicted gene, 25057
Tssr132999 15 99212522 to 99212525 3 + TSS region transcription start site region 132999
Gm46538 15 99213320 to 99225327 12007 - lncRNA gene predicted gene, 46538
Tssr133000 15 99215142 to 99215187 45 + TSS region transcription start site region 133000
Cpgi7699 15 99223438 to 99225526 2088 CpG island CpG island 7699
Tssr133001 15 99224545 to 99224573 28 + TSS region transcription start site region 133001
Tssr133002 15 99224579 to 99224618 39 + TSS region transcription start site region 133002
Kcnh3 15 99224861 to 99242817 17956 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 3
Tssr133003 15 99228532 to 99228541 9 + TSS region transcription start site region 133003
Tssr133004 15 99233890 to 99233904 14 + TSS region transcription start site region 133004
Cpgi7700 15 99233897 to 99234095 198 CpG island CpG island 7700
Tssr133005 15 99235265 to 99235269 4 + TSS region transcription start site region 133005
Mcrs1 15 99242817 to 99251961 9144 - protein coding gene microspherule protein 1
Tssr136351 15 99248934 to 99248947 13 - TSS region transcription start site region 136351
Tssr136352 15 99248952 to 99248972 20 - TSS region transcription start site region 136352
Tssr133006 15 99249242 to 99249259 17 + TSS region transcription start site region 133006
Tssr133007 15 99249468 to 99249504 36 + TSS region transcription start site region 133007
Gm34338 15 99249506 to 99284416 34910 + lncRNA gene predicted gene, 34338
Tssr133008 15 99249589 to 99249608 19 + TSS region transcription start site region 133008
Cpgi7701 15 99251662 to 99252716 1054 CpG island CpG island 7701
1700120C14Rik 15 99251788 to 99262041 10253 + lncRNA gene RIKEN cDNA 1700120C14 gene
Tssr136353 15 99251913 to 99251924 11 - TSS region transcription start site region 136353
Tssr136354 15 99251929 to 99251968 39 - TSS region transcription start site region 136354
Gm34447 15 99252010 to 99252883 873 + lncRNA gene predicted gene, 34447
Gm49458 15 99254525 to 99254835 310 - pseudogene predicted gene, 49458
Gm25999 15 99254882 to 99255014 132 - snoRNA gene predicted gene, 25999
Cal7 15 103517472 to 99121283 -4396189 heritable phenotypic marker caracul-like 7