Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:98883687-99083702

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dhh 15 98891152 to 98898540 7388 - protein coding gene desert hedgehog
Tssr136319 15 98892188 to 98892192 4 - TSS region transcription start site region 136319
Gm49442 15 98893351 to 98895175 1824 + antisense lncRNA gene predicted gene, 49442
Cpgi7680 15 98893352 to 98895280 1928 CpG island CpG island 7680
Tssr136320 15 98895411 to 98895432 21 - TSS region transcription start site region 136320
Cpgi7681 15 98895442 to 98896001 559 CpG island CpG island 7681
Cpgi7682 15 98897632 to 98898566 934 CpG island CpG island 7682
Tssr136321 15 98898458 to 98898467 9 - TSS region transcription start site region 136321
Tssr136322 15 98898483 to 98898558 75 - TSS region transcription start site region 136322
Lmbr1l 15 98903917 to 98918231 14314 - protein coding gene limb region 1 like
Cpgi7683 15 98917235 to 98918450 1215 CpG island CpG island 7683
Tssr132968 15 98917651 to 98917698 47 + TSS region transcription start site region 132968
Tssr136323 15 98918014 to 98918103 89 - TSS region transcription start site region 136323
Tssr136324 15 98918131 to 98918142 11 - TSS region transcription start site region 136324
D15Mit148 15 98927666 to 98927809 143 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 148
Tuba1b 15 98931427 to 98934560 3133 - protein coding gene tubulin, alpha 1B
Gm49450 15 98932137 to 98953551 21414 - protein coding gene predicted gene, 49450
Cpgi7684 15 98933740 to 98934941 1201 CpG island CpG island 7684
Tssr136325 15 98933922 to 98933937 15 - TSS region transcription start site region 136325
Gm41396 15 98934325 to 98940553 6228 + antisense lncRNA gene predicted gene, 41396
Tssr136326 15 98934438 to 98934444 6 - TSS region transcription start site region 136326
Tssr136327 15 98934447 to 98934505 58 - TSS region transcription start site region 136327
Tssr136328 15 98934522 to 98934586 64 - TSS region transcription start site region 136328
Tssr136329 15 98934602 to 98934612 10 - TSS region transcription start site region 136329
Tssr132969 15 98934626 to 98934689 63 + TSS region transcription start site region 132969
Tssr136330 15 98937327 to 98937351 24 - TSS region transcription start site region 136330
Tssr136331 15 98937355 to 98937386 31 - TSS region transcription start site region 136331
Tssr136332 15 98937388 to 98937413 25 - TSS region transcription start site region 136332
Gm49449 15 98942550 to 98943665 1115 + unclassified gene predicted gene, 49449
Tuba1a 15 98949847 to 98953501 3654 - protein coding gene tubulin, alpha 1A
Tssr136333 15 98951257 to 98951278 21 - TSS region transcription start site region 136333
Cpgi7685 15 98952989 to 98953716 727 CpG island CpG island 7685
Tssr132970 15 98953051 to 98953074 23 + TSS region transcription start site region 132970
Tssr136334 15 98953475 to 98953519 44 - TSS region transcription start site region 136334
Tssr136335 15 98953528 to 98953533 5 - TSS region transcription start site region 136335
Tssr136336 15 98953541 to 98953560 19 - TSS region transcription start site region 136336
Tssr136337 15 98953587 to 98953591 4 - TSS region transcription start site region 136337
Tssr136338 15 98953597 to 98953607 10 - TSS region transcription start site region 136338
Tssr136339 15 98953637 to 98953659 22 - TSS region transcription start site region 136339
Tssr136340 15 98953662 to 98953676 14 - TSS region transcription start site region 136340
Tssr136341 15 98953688 to 98953699 11 - TSS region transcription start site region 136341
Tssr132971 15 98953744 to 98953769 25 + TSS region transcription start site region 132971
B430209F14Rik 15 98954066 to 98979400 25334 + lncRNA gene RIKEN cDNA B430209F14 gene
Tssr136342 15 98955459 to 98955486 27 - TSS region transcription start site region 136342
Tssr136343 15 98957147 to 98957171 24 - TSS region transcription start site region 136343
Tssr132972 15 98983407 to 98983438 31 + TSS region transcription start site region 132972
Tssr132973 15 98983687 to 98983702 15 + TSS region transcription start site region 132973
Tssr132974 15 98983704 to 98983732 28 + TSS region transcription start site region 132974
Tssr132975 15 98983734 to 98983747 13 + TSS region transcription start site region 132975
Tssr132976 15 98983940 to 98983951 11 + TSS region transcription start site region 132976
Cpgi7686 15 98985523 to 98985939 416 CpG island CpG island 7686
Tssr136344 15 98985767 to 98985779 12 - TSS region transcription start site region 136344
Tssr136345 15 98985822 to 98985843 21 - TSS region transcription start site region 136345
4930578M01Rik 15 98985965 to 98989281 3316 + lncRNA gene RIKEN cDNA 4930578M01 gene
Tssr136346 15 98989864 to 98989876 12 - TSS region transcription start site region 136346
Tssr132977 15 98990000 to 98990017 17 + TSS region transcription start site region 132977
Tssr136347 15 98992602 to 98992613 11 - TSS region transcription start site region 136347
Tssr132978 15 98992800 to 98992814 14 + TSS region transcription start site region 132978
Cpgi7687 15 98993077 to 98993610 533 CpG island CpG island 7687
Tssr132979 15 98993250 to 98993289 39 + TSS region transcription start site region 132979
Gm8973 15 99006057 to 99006369 312 + pseudogene predicted gene 8973
Gm41398 15 99015369 to 99024411 9042 - lncRNA gene predicted gene, 41398
Cpgi7688 15 99029793 to 99030893 1100 CpG island CpG island 7688
Tssr132980 15 99029866 to 99029913 47 + TSS region transcription start site region 132980
Tuba1c 15 99029891 to 99038105 8214 + protein coding gene tubulin, alpha 1C
Tssr132981 15 99029915 to 99029924 9 + TSS region transcription start site region 132981
Tssr132982 15 99029928 to 99029949 21 + TSS region transcription start site region 132982
Tssr132983 15 99030287 to 99030297 10 + TSS region transcription start site region 132983
Tssr132984 15 99030312 to 99030328 16 + TSS region transcription start site region 132984
Tssr132985 15 99030377 to 99030397 20 + TSS region transcription start site region 132985
Tssr132986 15 99030856 to 99030868 12 + TSS region transcription start site region 132986
Tssr132987 15 99033747 to 99033756 9 + TSS region transcription start site region 132987
Cpgi7689 15 99040106 to 99040370 264 CpG island CpG island 7689
Gm41399 15 99041236 to 99051157 9921 + lncRNA gene predicted gene, 41399
D15Jcs28 15 99047824 to 99048119 295 DNA segment DNA segment, Chr 15, John C. Schimenti 28
Cpgi7690 15 99054932 to 99057518 2586 CpG island CpG island 7690
Tssr132988 15 99055164 to 99055183 19 + TSS region transcription start site region 132988
Prph 15 99055174 to 99058978 3804 + protein coding gene peripherin
Tssr132989 15 99055895 to 99055916 21 + TSS region transcription start site region 132989
D15Mit42 15 99056585 to 99056770 185 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 42
Gm34284 15 99068138 to 99074669 6531 - antisense lncRNA gene predicted gene, 34284
Cpgi7691 15 99074529 to 99075231 702 CpG island CpG island 7691
Tssr132990 15 99074968 to 99075005 37 + TSS region transcription start site region 132990
Troap 15 99074973 to 99083409 8436 + protein coding gene trophinin associated protein
Tssr132991 15 99075006 to 99075022 16 + TSS region transcription start site region 132991
Mir6960 15 99080805 to 99080865 60 + miRNA gene microRNA 6960