Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:98733029-100003135

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421 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
Arf3 15 98737624 to 98763118 25494 - protein coding gene ADP-ribosylation factor 3
Tssr132961 15 98738417 to 98738443 26 + TSS region transcription start site region 132961
Tssr136272 15 98738718 to 98738785 67 - TSS region transcription start site region 136272
Tssr136273 15 98740154 to 98740184 30 - TSS region transcription start site region 136273
Tssr136274 15 98740240 to 98740351 111 - TSS region transcription start site region 136274
Tssr132962 15 98740252 to 98740312 60 + TSS region transcription start site region 132962
Tssr136275 15 98740366 to 98740414 48 - TSS region transcription start site region 136275
Tssr136276 15 98741375 to 98741387 12 - TSS region transcription start site region 136276
Tssr136277 15 98742611 to 98742625 14 - TSS region transcription start site region 136277
Tssr136278 15 98742645 to 98742661 16 - TSS region transcription start site region 136278
Tssr136279 15 98755067 to 98755106 39 - TSS region transcription start site region 136279
5830427D03Rik 15 98760136 to 98762051 1915 unclassified gene RIKEN cDNA 5830427D03 gene
Cpgi7668 15 98762253 to 98763587 1334 CpG island CpG island 7668
Tssr136280 15 98763136 to 98763190 54 - TSS region transcription start site region 136280
Tssr136281 15 98763195 to 98763220 25 - TSS region transcription start site region 136281
Tssr136282 15 98763227 to 98763238 11 - TSS region transcription start site region 136282
Wnt10b 15 98770712 to 98778150 7438 - protein coding gene wingless-type MMTV integration site family, member 10B
Cpgi7669 15 98772355 to 98773032 677 CpG island CpG island 7669
Cpgi7670 15 98776002 to 98778593 2591 CpG island CpG island 7670
Tssr136283 15 98778528 to 98778541 13 - TSS region transcription start site region 136283
Tssr136284 15 98778545 to 98778568 23 - TSS region transcription start site region 136284
Cpgi7671 15 98778968 to 98779129 161 CpG island CpG island 7671
Cpgi7672 15 98789309 to 98790353 1044 CpG island CpG island 7672
Tssr132963 15 98789839 to 98789850 11 + TSS region transcription start site region 132963
Wnt1 15 98789857 to 98793830 3973 + protein coding gene wingless-type MMTV integration site family, member 1
Tssr132964 15 98790000 to 98790017 17 + TSS region transcription start site region 132964
Cpgi7673 15 98790735 to 98793222 2487 CpG island CpG island 7673
Cpgi7674 15 98797980 to 98798223 243 CpG island CpG island 7674
Ddn 15 98803782 to 98807925 4143 - protein coding gene dendrin
Tssr136285 15 98803800 to 98803804 4 - TSS region transcription start site region 136285
Cpgi7675 15 98804051 to 98804578 527 CpG island CpG island 7675
Tssr136286 15 98804090 to 98804114 24 - TSS region transcription start site region 136286
Cpgi7676 15 98805062 to 98808362 3300 CpG island CpG island 7676
B130046B21Rik 15 98807024 to 98816077 9053 + antisense lncRNA gene RIKEN cDNA B130046B21 gene
Tssr136287 15 98807890 to 98807908 18 - TSS region transcription start site region 136287
Tssr136288 15 98807910 to 98807932 22 - TSS region transcription start site region 136288
Tssr136289 15 98807940 to 98807956 16 - TSS region transcription start site region 136289
Tssr136290 15 98807962 to 98807976 14 - TSS region transcription start site region 136290
Tssr136291 15 98807995 to 98808002 7 - TSS region transcription start site region 136291
Tssr136292 15 98808306 to 98808318 12 - TSS region transcription start site region 136292
Tssr136293 15 98809487 to 98809492 5 - TSS region transcription start site region 136293
Prkag1 15 98812797 to 98831508 18711 - protein coding gene protein kinase, AMP-activated, gamma 1 non-catalytic subunit
Cpgi7677 15 98830743 to 98831673 930 CpG island CpG island 7677
Tssr132965 15 98830853 to 98830865 12 + TSS region transcription start site region 132965
Tssr136294 15 98831316 to 98831358 42 - TSS region transcription start site region 136294
Tssr136295 15 98831436 to 98831450 14 - TSS region transcription start site region 136295
Tssr136296 15 98831452 to 98831488 36 - TSS region transcription start site region 136296
Tssr136297 15 98831498 to 98831509 11 - TSS region transcription start site region 136297
Kmt2d 15 98831669 to 98871204 39535 - protein coding gene lysine (K)-specific methyltransferase 2D
Tssr136298 15 98832103 to 98832107 4 - TSS region transcription start site region 136298
Tssr136299 15 98832475 to 98832480 5 - TSS region transcription start site region 136299
Tssr132966 15 98835950 to 98835952 2 + TSS region transcription start site region 132966
Tssr136300 15 98845603 to 98845629 26 - TSS region transcription start site region 136300
Tssr136301 15 98845729 to 98845743 14 - TSS region transcription start site region 136301
Tssr136302 15 98845760 to 98845772 12 - TSS region transcription start site region 136302
Tssr136303 15 98845779 to 98845794 15 - TSS region transcription start site region 136303
Tssr136304 15 98846128 to 98846146 18 - TSS region transcription start site region 136304
Tssr136305 15 98846174 to 98846199 25 - TSS region transcription start site region 136305
Tssr136306 15 98846295 to 98846309 14 - TSS region transcription start site region 136306
Tssr136307 15 98862904 to 98862918 14 - TSS region transcription start site region 136307
Tssr136308 15 98863937 to 98863960 23 - TSS region transcription start site region 136308
Tssr136309 15 98863988 to 98864007 19 - TSS region transcription start site region 136309
Tssr136310 15 98867423 to 98867434 11 - TSS region transcription start site region 136310
Cpgi7678 15 98870821 to 98872587 1766 CpG island CpG island 7678
Tssr132967 15 98871015 to 98871046 31 + TSS region transcription start site region 132967
Tssr136311 15 98871175 to 98871187 12 - TSS region transcription start site region 136311
Tssr136312 15 98871966 to 98872003 37 - TSS region transcription start site region 136312
Tssr136313 15 98872158 to 98872184 26 - TSS region transcription start site region 136313
Tssr136314 15 98872186 to 98872233 47 - TSS region transcription start site region 136314
Gm49437 15 98872329 to 98872613 284 - unclassified gene predicted gene, 49437
5730414N17Rik 15 98872644 to 98874082 1438 + lincRNA gene RIKEN cDNA 5730414N17 gene
Rhebl1 15 98877760 to 98881497 3737 - protein coding gene Ras homolog enriched in brain like 1
Cpgi7679 15 98880851 to 98881587 736 CpG island CpG island 7679
Tssr136315 15 98881220 to 98881240 20 - TSS region transcription start site region 136315
Tssr136316 15 98881255 to 98881316 61 - TSS region transcription start site region 136316
Tssr136317 15 98881361 to 98881381 20 - TSS region transcription start site region 136317
Tssr136318 15 98881388 to 98881410 22 - TSS region transcription start site region 136318
Dhh 15 98891152 to 98898540 7388 - protein coding gene desert hedgehog
Tssr136319 15 98892188 to 98892192 4 - TSS region transcription start site region 136319
Gm49442 15 98893351 to 98895175 1824 + antisense lncRNA gene predicted gene, 49442
Cpgi7680 15 98893352 to 98895280 1928 CpG island CpG island 7680
Tssr136320 15 98895411 to 98895432 21 - TSS region transcription start site region 136320
Cpgi7681 15 98895442 to 98896001 559 CpG island CpG island 7681
Cpgi7682 15 98897632 to 98898566 934 CpG island CpG island 7682
Tssr136321 15 98898458 to 98898467 9 - TSS region transcription start site region 136321
Tssr136322 15 98898483 to 98898558 75 - TSS region transcription start site region 136322
Lmbr1l 15 98903917 to 98918231 14314 - protein coding gene limb region 1 like
Cpgi7683 15 98917235 to 98918450 1215 CpG island CpG island 7683
Tssr132968 15 98917651 to 98917698 47 + TSS region transcription start site region 132968
Tssr136323 15 98918014 to 98918103 89 - TSS region transcription start site region 136323
Tssr136324 15 98918131 to 98918142 11 - TSS region transcription start site region 136324
D15Mit148 15 98927666 to 98927809 143 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 148
Tuba1b 15 98931427 to 98934560 3133 - protein coding gene tubulin, alpha 1B
Gm49450 15 98932137 to 98953551 21414 - protein coding gene predicted gene, 49450
Cpgi7684 15 98933740 to 98934941 1201 CpG island CpG island 7684
Tssr136325 15 98933922 to 98933937 15 - TSS region transcription start site region 136325
Gm41396 15 98934325 to 98940553 6228 + antisense lncRNA gene predicted gene, 41396
Tssr136326 15 98934438 to 98934444 6 - TSS region transcription start site region 136326
Tssr136327 15 98934447 to 98934505 58 - TSS region transcription start site region 136327
Tssr136328 15 98934522 to 98934586 64 - TSS region transcription start site region 136328
Tssr136329 15 98934602 to 98934612 10 - TSS region transcription start site region 136329
Tssr132969 15 98934626 to 98934689 63 + TSS region transcription start site region 132969
Tssr136330 15 98937327 to 98937351 24 - TSS region transcription start site region 136330
Tssr136331 15 98937355 to 98937386 31 - TSS region transcription start site region 136331
Tssr136332 15 98937388 to 98937413 25 - TSS region transcription start site region 136332
Gm49449 15 98942550 to 98943665 1115 + unclassified gene predicted gene, 49449
Tuba1a 15 98949847 to 98953501 3654 - protein coding gene tubulin, alpha 1A
Tssr136333 15 98951257 to 98951278 21 - TSS region transcription start site region 136333
Cpgi7685 15 98952989 to 98953716 727 CpG island CpG island 7685
Tssr132970 15 98953051 to 98953074 23 + TSS region transcription start site region 132970
Tssr136334 15 98953475 to 98953519 44 - TSS region transcription start site region 136334
Tssr136335 15 98953528 to 98953533 5 - TSS region transcription start site region 136335
Tssr136336 15 98953541 to 98953560 19 - TSS region transcription start site region 136336
Tssr136337 15 98953587 to 98953591 4 - TSS region transcription start site region 136337
Tssr136338 15 98953597 to 98953607 10 - TSS region transcription start site region 136338
Tssr136339 15 98953637 to 98953659 22 - TSS region transcription start site region 136339
Tssr136340 15 98953662 to 98953676 14 - TSS region transcription start site region 136340
Tssr136341 15 98953688 to 98953699 11 - TSS region transcription start site region 136341
Tssr132971 15 98953744 to 98953769 25 + TSS region transcription start site region 132971
B430209F14Rik 15 98954066 to 98979400 25334 + lncRNA gene RIKEN cDNA B430209F14 gene
Tssr136342 15 98955459 to 98955486 27 - TSS region transcription start site region 136342
Tssr136343 15 98957147 to 98957171 24 - TSS region transcription start site region 136343
Tssr132972 15 98983407 to 98983438 31 + TSS region transcription start site region 132972
Tssr132973 15 98983687 to 98983702 15 + TSS region transcription start site region 132973
Tssr132974 15 98983704 to 98983732 28 + TSS region transcription start site region 132974
Tssr132975 15 98983734 to 98983747 13 + TSS region transcription start site region 132975
Tssr132976 15 98983940 to 98983951 11 + TSS region transcription start site region 132976
Cpgi7686 15 98985523 to 98985939 416 CpG island CpG island 7686
Tssr136344 15 98985767 to 98985779 12 - TSS region transcription start site region 136344
Tssr136345 15 98985822 to 98985843 21 - TSS region transcription start site region 136345
4930578M01Rik 15 98985965 to 98989281 3316 + lncRNA gene RIKEN cDNA 4930578M01 gene
Tssr136346 15 98989864 to 98989876 12 - TSS region transcription start site region 136346
Tssr132977 15 98990000 to 98990017 17 + TSS region transcription start site region 132977
Tssr136347 15 98992602 to 98992613 11 - TSS region transcription start site region 136347
Tssr132978 15 98992800 to 98992814 14 + TSS region transcription start site region 132978
Cpgi7687 15 98993077 to 98993610 533 CpG island CpG island 7687
Tssr132979 15 98993250 to 98993289 39 + TSS region transcription start site region 132979
Gm8973 15 99006057 to 99006369 312 + pseudogene predicted gene 8973
Gm41398 15 99015369 to 99024411 9042 - lncRNA gene predicted gene, 41398
Cpgi7688 15 99029793 to 99030893 1100 CpG island CpG island 7688
Tssr132980 15 99029866 to 99029913 47 + TSS region transcription start site region 132980
Tuba1c 15 99029891 to 99038105 8214 + protein coding gene tubulin, alpha 1C
Tssr132981 15 99029915 to 99029924 9 + TSS region transcription start site region 132981
Tssr132982 15 99029928 to 99029949 21 + TSS region transcription start site region 132982
Tssr132983 15 99030287 to 99030297 10 + TSS region transcription start site region 132983
Tssr132984 15 99030312 to 99030328 16 + TSS region transcription start site region 132984
Tssr132985 15 99030377 to 99030397 20 + TSS region transcription start site region 132985
Tssr132986 15 99030856 to 99030868 12 + TSS region transcription start site region 132986
Tssr132987 15 99033747 to 99033756 9 + TSS region transcription start site region 132987
Cpgi7689 15 99040106 to 99040370 264 CpG island CpG island 7689
Gm41399 15 99041236 to 99051157 9921 + lncRNA gene predicted gene, 41399
D15Jcs28 15 99047824 to 99048119 295 DNA segment DNA segment, Chr 15, John C. Schimenti 28
Cpgi7690 15 99054932 to 99057518 2586 CpG island CpG island 7690
Tssr132988 15 99055164 to 99055183 19 + TSS region transcription start site region 132988
Prph 15 99055174 to 99058978 3804 + protein coding gene peripherin
Tssr132989 15 99055895 to 99055916 21 + TSS region transcription start site region 132989
D15Mit42 15 99056585 to 99056770 185 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 42
Gm34284 15 99068138 to 99074669 6531 - antisense lncRNA gene predicted gene, 34284
Cpgi7691 15 99074529 to 99075231 702 CpG island CpG island 7691
Tssr132990 15 99074968 to 99075005 37 + TSS region transcription start site region 132990
Troap 15 99074973 to 99083409 8436 + protein coding gene trophinin associated protein
Tssr132991 15 99075006 to 99075022 16 + TSS region transcription start site region 132991
Mir6960 15 99080805 to 99080865 60 + miRNA gene microRNA 6960
C1ql4 15 99084086 to 99087817 3731 - protein coding gene complement component 1, q subcomponent-like 4
Cpgi7692 15 99084618 to 99084935 317 CpG island CpG island 7692
Cpgi7693 15 99087093 to 99088622 1529 CpG island CpG island 7693
Tssr136348 15 99088426 to 99088429 3 - TSS region transcription start site region 136348
Cpgi7694 15 99093232 to 99094228 996 CpG island CpG island 7694
Cpgi7695 15 99094821 to 99095274 453 CpG island CpG island 7695
Cpgi7696 15 99096421 to 99098729 2308 CpG island CpG island 7696
Tssr136349 15 99096860 to 99096861 1 - TSS region transcription start site region 136349
Cpgi7697 15 99099110 to 99099415 305 CpG island CpG island 7697
Dnajc22 15 99099134 to 99104737 5603 + protein coding gene DnaJ heat shock protein family (Hsp40) member C22
Tssr132992 15 99099451 to 99099482 31 + TSS region transcription start site region 132992
Tssr132993 15 99099487 to 99099524 37 + TSS region transcription start site region 132993
D15Mit44 15 99121283 to 99121446 163 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 44
Cpgi7698 15 99125814 to 99127305 1491 CpG island CpG island 7698
Tssr132994 15 99125893 to 99125909 16 + TSS region transcription start site region 132994
Spats2 15 99125926 to 99213215 87289 + protein coding gene spermatogenesis associated, serine-rich 2
Tssr132995 15 99126513 to 99126616 103 + TSS region transcription start site region 132995
Tssr132996 15 99126618 to 99126640 22 + TSS region transcription start site region 132996
Tssr132997 15 99126736 to 99126770 34 + TSS region transcription start site region 132997
Tssr132998 15 99126782 to 99126822 40 + TSS region transcription start site region 132998
Gm25183 15 99133067 to 99133172 105 - snoRNA gene predicted gene, 25183
Gm46537 15 99135620 to 99136172 552 - pseudogene predicted gene, 46537
Tssr136350 15 99136095 to 99136098 3 - TSS region transcription start site region 136350
Gm25057 15 99174850 to 99174937 87 - unclassified non-coding RNA gene predicted gene, 25057
Tssr132999 15 99212522 to 99212525 3 + TSS region transcription start site region 132999
Gm46538 15 99213320 to 99225327 12007 - lncRNA gene predicted gene, 46538
Tssr133000 15 99215142 to 99215187 45 + TSS region transcription start site region 133000
Cpgi7699 15 99223438 to 99225526 2088 CpG island CpG island 7699
Tssr133001 15 99224545 to 99224573 28 + TSS region transcription start site region 133001
Tssr133002 15 99224579 to 99224618 39 + TSS region transcription start site region 133002
Kcnh3 15 99224861 to 99242817 17956 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 3
Tssr133003 15 99228532 to 99228541 9 + TSS region transcription start site region 133003
Tssr133004 15 99233890 to 99233904 14 + TSS region transcription start site region 133004
Cpgi7700 15 99233897 to 99234095 198 CpG island CpG island 7700
Tssr133005 15 99235265 to 99235269 4 + TSS region transcription start site region 133005
Mcrs1 15 99242817 to 99251961 9144 - protein coding gene microspherule protein 1